# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/MT-A70.hmm.txt # target sequence database: proteomes/Amphimedon_queenslandica.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: MT-A70 [M=172] Accession: PF05063.13 Description: MT-A70 Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-58 198.9 0.0 2.3e-58 198.2 0.0 1.3 1 tr|A0A1X7VR21|A0A1X7VR21_AMPQE Uncharacterized protein OS=Amphi 1.2e-55 189.4 0.1 2.2e-55 188.5 0.1 1.4 1 tr|A0A1X7TVM4|A0A1X7TVM4_AMPQE Uncharacterized protein OS=Amphi 1.6e-36 127.1 0.0 2.4e-26 93.9 0.1 2.2 2 tr|A0A1X7VK93|A0A1X7VK93_AMPQE Uncharacterized protein OS=Amphi Domain annotation for each sequence (and alignments): >> tr|A0A1X7VR21|A0A1X7VR21_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 198.2 0.0 1.6e-62 2.3e-58 1 172 [] 318 479 .. 318 479 .. 0.98 Alignments for each domain: == domain 1 score: 198.2 bits; conditional E-value: 1.6e-62 ECEEEE---BHHCC..HTT--SS--B-HHHHHTS-GGGCECCEEEEEEEEETTCHHHHHHHHHHHCT-EEEEEEEEEEE CS MT-A70 1 fdviiidPpweeklvarkkelpyktlneeelkaLpipelldkrslvflWvtnrellelkrellkkWglelveeltwlki 79 f+v+++dPpw++++ elpy+t++++e+++L+ip+l+d++ ++flWvt+r+++ + re+l Wg+e+++el w+k+ tr|A0A1X7VR21|A0A1X7VR21_AMPQE 318 FAVVMADPPWDIHM-----ELPYGTMSDDEMRQLDIPSLQDDG-FIFLWVTGRAMELG-RECLTLWGYERIDELVWVKT 389 89************.....9*********************99.*************9.******************** PP -TTSCBS-BS-TTSSSBB-EEEEEEEEES---TTT.TTB-TTSSBSEEEEE-CTTTSS-THHHHHHHHHCTCS-EEEET CS MT-A70 80 nklgepiatlesgavlkkskEhllvgvkgnvkrstdkiinknvdtdliisperehsrKPpelfellehllesarkLelF 158 n+l+++i+t+++g+++++ kEh+lvg kgn + +n+++dtd+i++++r +srKP+e++ ++e+l++++rk+elF tr|A0A1X7VR21|A0A1X7VR21_AMPQE 390 NQLQRLIRTGRTGHWINHGKEHCLVGAKGNLQ-----GVNRGIDTDVIVAEVRATSRKPDEIYGVIERLSPGTRKIELF 463 *******************************8.....68999************************************* PP --G..--TTEEEEETT CS MT-A70 159 aRs..lrpgwltvGne 172 +R+ +p+wlt+Gn+ tr|A0A1X7VR21|A0A1X7VR21_AMPQE 464 GRQhnCQPNWLTLGNQ 479 ***99*********97 PP >> tr|A0A1X7TVM4|A0A1X7TVM4_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 188.5 0.1 1.5e-59 2.2e-55 1 171 [. 205 382 .. 205 383 .. 0.95 Alignments for each domain: == domain 1 score: 188.5 bits; conditional E-value: 1.5e-59 ECEEEE---BHHCC..HTT..--SS--B-HHHHHTS-GGGCECCEEEEEEEEETTCHHHHHHHHHHHCT-EEEEEEEEE CS MT-A70 1 fdviiidPpweeklvarkk..elpyktlneeelkaLpipelldkrslvflWvtnrellelkrellkkWglelveeltwl 77 fdvi+idPp+ee+ +r++ + p + ++ ee+++L+i+++ ++rs+vflW+++ e+l+l+re+lkkWg++++e+++w+ tr|A0A1X7TVM4|A0A1X7TVM4_AMPQE 205 FDVILIDPPLEEYQ-RRTTgiTYPWQPWDFEEIMNLKIEDVSAPRSFVFLWCGSCEGLDLGRECLKKWGFRRCEDICWV 282 9************9.55555888889***************************************************** PP EE-TTSCBS-..BS-TTSSSBB-EEEEEEEEES---TTT.T.TB-TTSSBSEEEE..E-CTTTSS-THHHHHHHHHCTC CS MT-A70 78 kinklgepia..tlesgavlkkskEhllvgvkgnvkrstdk.iinknvdtdliis..perehsrKPpelfellehlles 151 k+n ++p+ +le + +++++kEh+l+g+kg+v+r+ d+ +i++n+d d+iis pe ++ KP+e+f+++eh++ + tr|A0A1X7TVM4|A0A1X7TVM4_AMPQE 283 KTN-MNDPGNttHLEQKSIFQHTKEHCLMGIKGTVRRNQDGhFIHANIDLDIIISeePEMGNNDKPEEIFHIIEHFCLG 360 ***.77777655789999*************************************99999******************* PP S-EEEET--G..--TTEEEEET CS MT-A70 152 arkLelFaRs..lrpgwltvGn 171 +++L+lF+ + +rpgwlt+G+ tr|A0A1X7TVM4|A0A1X7TVM4_AMPQE 361 RKRLHLFGNDatVRPGWLTLGP 382 **********99*********7 PP >> tr|A0A1X7VK93|A0A1X7VK93_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 93.9 0.1 1.7e-30 2.4e-26 1 108 [. 199 304 .. 199 315 .. 0.93 2 ! 30.9 0.0 3.7e-11 5.4e-07 123 172 .] 381 431 .. 357 431 .. 0.85 Alignments for each domain: == domain 1 score: 93.9 bits; conditional E-value: 1.7e-30 ECEEEE---BHHCC..HTT--SS--B-HHHHHTS-GGGCECCEEEEEEEEETTCHHHH..HHHHHHHCT-EEEEEEEEE CS MT-A70 1 fdviiidPpweeklvarkkelpyktlneeelkaLpipelldkrslvflWvtnrellel..krellkkWglelveeltwl 77 +++i++dPpwe+++ r +yk l++e++++Lpipel ++++lv+lWvtn+ l + +ell+kWgle + e+ w+ tr|A0A1X7VK93|A0A1X7VK93_AMPQE 199 YNIIVLDPPWENRSAIRGG--KYKWLDKEDISQLPIPELIAPGGLVALWVTNKRQLVQwtVQELLPKWGLEYIGEWLWI 275 899***********77775..9*******************************99999899****************** PP EE-TTSCBS-BS-TTSSSBB-EEEEEEEEES CS MT-A70 78 kinklgepiatlesgavlkkskEhllvgvkg 108 k++++g+ +++ ++ v+kk++E+l++g + tr|A0A1X7VK93|A0A1X7VK93_AMPQE 276 KVTTEGDFVFD--VDSVHKKPYESLIIGKRP 304 **********7..7778***********985 PP == domain 2 score: 30.9 bits; conditional E-value: 3.7e-11 SBSEEEEE-CTTTSS-THHHHHHHHHC..TCS-EEEET--G--TTEEEEETT CS MT-A70 123 dtdliisperehsrKPpelfellehll..esarkLelFaRslrpgwltvGne 172 + l+ p++ hs+KP l ++l+ + +++++LelFaR+l pgw+++Gne tr|A0A1X7VK93|A0A1X7VK93_AMPQE 381 QYSLMCIPSTTHSQKPY-LGDILQLYAesKDMKCLELFARNLLPGWTSWGNE 431 66777789********9.899999888788999*****************97 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (172 nodes) Target sequences: 43435 (14716620 residues searched) Passed MSV filter: 1143 (0.0263152); expected 868.7 (0.02) Passed bias filter: 795 (0.0183032); expected 868.7 (0.02) Passed Vit filter: 49 (0.00112812); expected 43.4 (0.001) Passed Fwd filter: 3 (6.90687e-05); expected 0.4 (1e-05) Initial search space (Z): 43435 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.20u 0.01s 00:00:00.21 Elapsed: 00:00:00.10 # Mc/sec: 25312.59 // [ok]