# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/MT-A70.hmm.txt # target sequence database: proteomes/Anolis_carolinensis.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: MT-A70 [M=172] Accession: PF05063.13 Description: MT-A70 Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.2e-63 212.8 0.0 4.5e-63 212.3 0.0 1.2 1 tr|G1KP31|G1KP31_ANOCA Methyltransferase like 14 OS=Anolis c 1.2e-60 204.3 0.0 2.5e-60 203.3 0.0 1.5 1 tr|H9G6T9|H9G6T9_ANOCA Methyltransferase like 3 OS=Anolis ca 5.9e-38 130.5 0.2 1.6e-37 129.1 0.0 1.7 2 tr|G1KI45|G1KI45_ANOCA Methyltransferase like 4 OS=Anolis ca Domain annotation for each sequence (and alignments): >> tr|G1KP31|G1KP31_ANOCA Methyltransferase like 14 OS=Anolis carolinensis OX=28377 GN=METTL14 PE=3 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 212.3 0.0 7.4e-67 4.5e-63 1 171 [. 186 362 .. 186 363 .. 0.96 Alignments for each domain: == domain 1 score: 212.3 bits; conditional E-value: 7.4e-67 ECEEEE---BHHCC..HTT--SS--B-HHHHHTS-GGGCECCEEEEEEEEETTCHHHHHHHHHHHCT-EEEEEEEEEEE-TTSCBS- CS MT-A70 1 fdviiidPpweeklvarkkelpyktlneeelkaLpipelldkrslvflWvtnrellelkrellkkWglelveeltwlkinklgepia 87 fdvi+++Pp+ee++++ ++++k+++++++++L+i+el+++rs+vflW+++ e+l+l+r++l+kWg++++e+++w+k+n +++p++ tr|G1KP31|G1KP31_ANOCA 186 FDVILMEPPLEEYYRETGITANEKCWTWDDIMKLDIEELAAPRSFVFLWCGSGEGLDLGRVCLRKWGYRRCEDICWIKTN-KNNPGK 271 9*************66555*************************************************************.556555 PP ..BS-TTSSSBB-EEEEEEEEES---TTT.T.TB-TTSSBSEEEE..E-CTTTSS-THHHHHHHHHCTCS-EEEET--G..--TTEE CS MT-A70 88 ..tlesgavlkkskEhllvgvkgnvkrstdk.iinknvdtdliis..perehsrKPpelfellehllesarkLelFaRs..lrpgwl 167 tl+++av++++kEh+l+g+kg+v+rstd+ +i++nvd+dlii+ pe+++++KP e+f+++eh++ ++r+L+lF+R+ +rpgwl tr|G1KP31|G1KP31_ANOCA 272 tkTLDPKAVFQRTKEHCLMGIKGTVRRSTDGdFIHANVDIDLIITeePEIGNIEKPVEIFHIIEHFCLGRRRLHLFGRDstIRPGWL 358 569******************************************999*************************************** PP EEET CS MT-A70 168 tvGn 171 tvG+ tr|G1KP31|G1KP31_ANOCA 359 TVGP 362 ***7 PP >> tr|H9G6T9|H9G6T9_ANOCA Methyltransferase like 3 OS=Anolis carolinensis OX=28377 GN=METTL3 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 203.3 0.0 4.1e-64 2.5e-60 1 172 [] 378 539 .. 378 539 .. 0.98 Alignments for each domain: == domain 1 score: 203.3 bits; conditional E-value: 4.1e-64 ECEEEE---BHHCC..HTT--SS--B-HHHHHTS-GGGCECCEEEEEEEEETTCHHHHHHHHHHHCT-EEEEEEEEEEE-TTSCBS- CS MT-A70 1 fdviiidPpweeklvarkkelpyktlneeelkaLpipelldkrslvflWvtnrellelkrellkkWglelveeltwlkinklgepia 87 f+v+++dPpw++++ elpy+tl+++e+++L+ip+l+d++ ++flWvt+r+++ + re+l+ Wg+e+v+e++w+k+n+l+++i+ tr|H9G6T9|H9G6T9_ANOCA 378 FAVVMADPPWDIHM-----ELPYGTLTDDEMRRLNIPVLQDEG-FLFLWVTGRAMELG-RECLNLWGYERVDEIIWVKTNQLQRIIR 457 89************.....9*********************99.*************9.**************************** PP BS-TTSSSBB-EEEEEEEEES---TTT.TTB-TTSSBSEEEEE-CTTTSS-THHHHHHHHHCTCS-EEEET--G..--TTEEEEETT CS MT-A70 88 tlesgavlkkskEhllvgvkgnvkrstdkiinknvdtdliisperehsrKPpelfellehllesarkLelFaRs..lrpgwltvGne 172 t+++g++l++ kEh+lvgvkgn++ +n++ d+d+i++++r++s+KP+e++ ++e+l++++rk+elF+R ++p+w+t+Gn+ tr|H9G6T9|H9G6T9_ANOCA 458 TGRTGHWLNHGKEHCLVGVKGNPQ-----GFNRGLDCDVIVAEVRSTSHKPDEIYGMIERLSPGTRKIELFGRPhnVQPNWITLGNQ 539 ***********************8.....67899***************************************999*********97 PP >> tr|G1KI45|G1KI45_ANOCA Methyltransferase like 4 OS=Anolis carolinensis OX=28377 GN=METTL4 PE=3 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.9 0.0 0.46 2.9e+03 120 154 .. 76 110 .. 65 114 .. 0.75 2 ! 129.1 0.0 2.5e-41 1.6e-37 1 172 [] 286 461 .. 286 461 .. 0.89 Alignments for each domain: == domain 1 score: -1.9 bits; conditional E-value: 0.46 TTSSBSEEEEE-CTTTSS-THHHHHHHHHCTCS-E CS MT-A70 120 knvdtdliisperehsrKPpelfellehllesark 154 + +++ ++ +e+ ++ KP+ ++l l +++ + tr|G1KI45|G1KI45_ANOCA 76 EASQKTYVFREEFFNMLKPHISVNLQTELQQGNSE 110 44588899999999999**9999999998876654 PP == domain 2 score: 129.1 bits; conditional E-value: 2.5e-41 ECEEEE---BHHCC..HTT--SS--B-HHHHHTS-GGGCECCEEEEEEEEETTCHHHH..HHHHHHHCT-EEEEEEEEEEE-TTSCB CS MT-A70 1 fdviiidPpweeklvarkkelpyktlneeelkaLpipelldkrslvflWvtnrellel..krellkkWglelveeltwlkinklgep 85 f +i+idPpwe+k+v+r++ +y+ l++ ++k++p+p l+++++lv+ Wvtnr+ + k+el + W ++ v e+ w+ki++ ge tr|G1KI45|G1KI45_ANOCA 286 FGIIVIDPPWENKSVKRSN--RYSYLSHSQIKQIPVPALAAPGCLVVTWVTNRQRHLRfvKNELYPYWSVHGVVEWFWVKITRSGEF 370 789***************8..9**********************************999999************************* PP S-BS-TTSSSBB-EEEEEEE.EES---T...TT.TTB-TTS.SBSEEEE.E-CTTTSS-THHHHHHHHHCTCS-EEEET--G--TTE CS MT-A70 86 iatlesgavlkkskEhllvg.vkgnvkr...stdkiinknv.dtdliis.perehsrKPpelfellehllesarkLelFaRslrpgw 166 +++l+ +kk++E l++g v+g + r ++i+ ++ d++li+s p + hs+KPp+ l e ++ ++LelFaR+l+pgw tr|G1KI45|G1KI45_ANOCA 371 VFPLN--SFHKKPYEVLILGrVQGSTDRplrISEDIVLPEIpDQKLIVSvPCTLHSHKPPLADVLKEYAKPEVNCLELFARNLQPGW 455 **865..569*********955555554110334455555589******99*********8888888888***************** PP EEEETT CS MT-A70 167 ltvGne 172 +++Gne tr|G1KI45|G1KI45_ANOCA 456 TSWGNE 461 ****97 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (172 nodes) Target sequences: 18528 (9796552 residues searched) Passed MSV filter: 526 (0.0283895); expected 370.6 (0.02) Passed bias filter: 342 (0.0184585); expected 370.6 (0.02) Passed Vit filter: 27 (0.00145725); expected 18.5 (0.001) Passed Fwd filter: 3 (0.000161917); expected 0.2 (1e-05) Initial search space (Z): 18528 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.13u 0.01s 00:00:00.14 Elapsed: 00:00:00.07 # Mc/sec: 24071.53 // [ok]