# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/MT-A70.hmm.txt # target sequence database: proteomes/Branchiostoma_floridae.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: MT-A70 [M=172] Accession: PF05063.13 Description: MT-A70 Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.8e-58 196.9 0.1 6.9e-58 196.0 0.1 1.5 1 tr|C3YFD7|C3YFD7_BRAFL Uncharacterized protein OS=Branchiost 1.8e-34 119.8 0.1 2.1e-34 119.5 0.1 1.1 1 tr|C3ZVZ2|C3ZVZ2_BRAFL Uncharacterized protein (Fragment) OS 6e-20 72.5 0.0 7.4e-20 72.2 0.0 1.1 1 tr|C3YFU8|C3YFU8_BRAFL Uncharacterized protein OS=Branchiost Domain annotation for each sequence (and alignments): >> tr|C3YFD7|C3YFD7_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_217213 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 196.0 0.1 7.2e-62 6.9e-58 1 172 [] 377 538 .. 377 538 .. 0.99 Alignments for each domain: == domain 1 score: 196.0 bits; conditional E-value: 7.2e-62 ECEEEE---BHHCC..HTT--SS--B-HHHHHTS-GGGCECCEEEEEEEEETTCHHHHHHHHHHHCT-EEEEEEEEEEE-TTSCBS- CS MT-A70 1 fdviiidPpweeklvarkkelpyktlneeelkaLpipelldkrslvflWvtnrellelkrellkkWglelveeltwlkinklgepia 87 f+v+++dPpw++++ +lpy+t++++e+++L+++ ++d++ +flWvt+r+++ + re+lk Wg+e+v+el+w+k+n+l+++i+ tr|C3YFD7|C3YFD7_BRAFL 377 FSVVMADPPWDIHM-----DLPYGTMTDDEMRTLNVSAIQDEG-YIFLWVTGRAMELG-RECLKLWGYERVDELIWVKTNQLQRIIR 456 89************.....8**********************9.*************9.**************************** PP BS-TTSSSBB-EEEEEEEEES---TTT.TTB-TTSSBSEEEEE-CTTTSS-THHHHHHHHHCTCS-EEEET--G..--TTEEEEETT CS MT-A70 88 tlesgavlkkskEhllvgvkgnvkrstdkiinknvdtdliisperehsrKPpelfellehllesarkLelFaRs..lrpgwltvGne 172 t+++g++l++ kEh+lvg kg++ ++n++ d d+i++++re+s+KP+e++ ++e+l++++rk+elF+R+ ++p+w+t+Gn+ tr|C3YFD7|C3YFD7_BRAFL 457 TGRTGHWLNHGKEHCLVGAKGTPF-----WTNRGLDADVIVAEVRETSHKPDEVYGIIERLAPGRRKIELFGRMhnVQPNWVTLGNQ 538 ***********************7.....999******************************************9**********97 PP >> tr|C3ZVZ2|C3ZVZ2_BRAFL Uncharacterized protein (Fragment) OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_237642 PE= # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 119.5 0.1 2.3e-38 2.1e-34 1 172 [] 51 225 .. 51 225 .. 0.85 Alignments for each domain: == domain 1 score: 119.5 bits; conditional E-value: 2.3e-38 ECEEEE---BHHCC..HTT--SS--B-HHHHHTS-GGGCECCEEEEEEEEETTCHHHH..HHHHHHHCT-EEEEEEEEEEE-TTSCB CS MT-A70 1 fdviiidPpweeklvarkkelpyktlneeelkaLpipelldkrslvflWvtnrellel..krellkkWglelveeltwlkinklgep 85 +++i++dPpwe+k+v+r + +y+ l+ +l +Lpip+l+++++lv+ Wvtnr+ + ++ l ++W +e v+e+ wlk++++gep tr|C3ZVZ2|C3ZVZ2_BRAFL 51 YHLIVMDPPWENKSVKRGR--KYESLSPWQLFQLPIPSLAAPGCLVVTWVTNRQQHMRfvRERLYPHWSVEPVAEWHWLKVTRTGEP 135 789**************97..9********************************999996677779********************* PP S-BS-TTSSSBB-EEEEEEEEES---T...TT.TTB-TTS.SBSEEEE.E-CTTTSS-THHHHHHHHHCTCS-EEEET--G--TTEE CS MT-A70 86 iatlesgavlkkskEhllvgvkgnvkr...stdkiinknv.dtdliis.perehsrKPpelfellehllesarkLelFaRslrpgwl 167 +++++s +kk++E +++g ++ + +t+ ++ ++v ++i s p hsrKP + l + l +s +LelFaR l+p w+ tr|C3ZVZ2|C3ZVZ2_BRAFL 136 VFPMDSP--HKKPYETIILGRFQDQSDghtETSSSPLSDVpRHKVICSvPCAIHSRKPTLDEVLQKYLPPSPICLELFARCLQPRWT 220 **97777..9**********866665410044445555665566777799*********55555555557777************** PP EEETT CS MT-A70 168 tvGne 172 ++Gne tr|C3ZVZ2|C3ZVZ2_BRAFL 221 SWGNE 225 ***97 PP >> tr|C3YFU8|C3YFU8_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_58874 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 72.2 0.0 7.8e-24 7.4e-20 104 171 .. 1 73 [. 1 74 [. 0.97 Alignments for each domain: == domain 1 score: 72.2 bits; conditional E-value: 7.8e-24 EEEES---TTT.T.TB-TTSSBSEEEE..E-CTTTSS-THHHHHHHHHCTCS-EEEET--G..--TTEEEEET CS MT-A70 104 vgvkgnvkrstdk.iinknvdtdliis..perehsrKPpelfellehllesarkLelFaRs..lrpgwltvGn 171 +g+kg+v+rstd+ +i++nvd+dlii pe+++++KP+e+f ++eh++ ++r+L++F+R+ +rpgwl++G+ tr|C3YFU8|C3YFU8_BRAFL 1 MGIKGTVRRSTDGdFIHANVDIDLIINeePEHGSIEKPDEIFSIMEHFCLGRRRLHVFGRDdtIRPGWLSIGP 73 89*************************8889999**************************************6 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (172 nodes) Target sequences: 28542 (13248087 residues searched) Passed MSV filter: 666 (0.023334); expected 570.8 (0.02) Passed bias filter: 528 (0.0184991); expected 570.8 (0.02) Passed Vit filter: 35 (0.00122626); expected 28.5 (0.001) Passed Fwd filter: 3 (0.000105108); expected 0.3 (1e-05) Initial search space (Z): 28542 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.18u 0.01s 00:00:00.19 Elapsed: 00:00:00.09 # Mc/sec: 25318.57 // [ok]