# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/MT-A70.hmm.txt # target sequence database: proteomes/Ciona_intestinalis.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: MT-A70 [M=172] Accession: PF05063.13 Description: MT-A70 Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.2e-54 182.2 0.0 1.1e-53 181.6 0.0 1.3 1 tr|F6VZQ9|F6VZQ9_CIOIN methyltransferase-like protein 14 hom 5e-38 130.6 2.4 5.7e-38 130.4 2.4 1.0 1 tr|F6UFW3|F6UFW3_CIOIN Uncharacterized protein OS=Ciona inte Domain annotation for each sequence (and alignments): >> tr|F6VZQ9|F6VZQ9_CIOIN methyltransferase-like protein 14 homolog OS=Ciona intestinalis OX=7719 GN=LOC100176240 PE=3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 181.6 0.0 1.3e-57 1.1e-53 1 172 [] 169 343 .. 169 343 .. 0.93 Alignments for each domain: == domain 1 score: 181.6 bits; conditional E-value: 1.3e-57 ECEEEE---BHHCC..HTT--SS--B-HHHHHTS-GGGCECCEEEEEEEEETTCHHHHHHHHHHHCT-EEEEEEEEEEE-TTSCBS- CS MT-A70 1 fdviiidPpweeklvarkkelpyktlneeelkaLpipelldkrslvflWvtnrellelkrellkkWglelveeltwlkinklgepia 87 fdvi+i+Pp+ee+ ++ l + ++e+++ L+i+e+ ++rs+vflW++++ +l+ +r++lkkWg++++e+++w+k+n ++++ tr|F6VZQ9|F6VZQ9_CIOIN 169 FDVILIEPPLEEYKKQAGLPLTGQETSWEDVMSLEIEEVSAQRSFVFLWCGSSDGLDYGRQCLKKWGFRRCEDICWIKTN-FKKT-N 253 9************9555559999*********************************************************.4443.3 PP BS-TTSSSBB-EEEEEEEEES---TTT.T.TB-TTSSBSEEEE..E-CTTTSS-THHHHHHHHHCTCS-EEEET--G..--TTEEEE CS MT-A70 88 tlesgavlkkskEhllvgvkgnvkrstdk.iinknvdtdliis..perehsrKPpelfellehllesarkLelFaRs..lrpgwltv 169 +l + + ++kEh+l+g+kg+v+rstd+ +i++nvd+dlii e ++ +KP+e+f+++eh++ ++r+L+lF+R+ +rpgwlt+ tr|F6VZQ9|F6VZQ9_CIOIN 254 KLIDESLFVRTKEHCLMGIKGTVRRSTDGdFIHANVDIDLIIEeeGEPGSNEKPEEMFHVIEHFCLGRRRLHLFGRDtsIRPGWLTI 340 4566789************************************65567799**************************99******** PP ETT CS MT-A70 170 Gne 172 G++ tr|F6VZQ9|F6VZQ9_CIOIN 341 GPQ 343 *87 PP >> tr|F6UFW3|F6UFW3_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=3 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 130.4 2.4 6.9e-42 5.7e-38 1 172 [] 20 191 .. 20 191 .. 0.92 Alignments for each domain: == domain 1 score: 130.4 bits; conditional E-value: 6.9e-42 ECEEEE---BHHCC..HTT--SS--B-HHHHHTS-GGGCECCEEEEEEEEETTCHHHH..HHHHHHHCT-EEEEEEEEEEE-TTSCB CS MT-A70 1 fdviiidPpweeklvarkkelpyktlneeelkaLpipelldkrslvflWvtnrellel..krellkkWglelveeltwlkinklgep 85 +++i++dPpwe+k+v+r k +y+ l+ +++ ++p+p+l+++++ v +Wvtn++ + + k+ l++ W+++ + w+k++ g+p tr|F6UFW3|F6UFW3_CIOIN 20 YNCIVMDPPWENKSVKRGK--KYNWLSFDDIIKMPVPQLTEEGCYVIVWVTNKQRIMNfvKKTLFPMWNIDFQVIWHWVKVTIAGKP 104 89****************9..9********************************999999*************************** PP S-BS-TTSSSBB-EEEEEEEEES---TTT.TTB-TTSSBSEEEE.E-CTTTSS-THHHHHHHHHC...TCS-EEEET--G--TTEEE CS MT-A70 86 iatlesgavlkkskEhllvgvkgnvkrstdkiinknvdtdliis.perehsrKPpelfellehll...esarkLelFaRslrpgwlt 168 +++ + +kk++E +++g + n+krs + + +n+++ +i s p ++hs+KPp l+e+l++ + e+ ++Le+FaR+l pgw++ tr|F6UFW3|F6UFW3_CIOIN 105 LYPF--DSLHKKPYETIIIG-RYNPKRSHQPKCIENMKELVICSiPCSQHSHKPP-LSEILQRYTdlqENSKCLEMFARNLIPGWTS 187 **85..5569*********9.6788888876566888999999999*********.8899998887768889*************** PP EETT CS MT-A70 169 vGne 172 +Gne tr|F6UFW3|F6UFW3_CIOIN 188 WGNE 191 **97 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (172 nodes) Target sequences: 16678 (5370518 residues searched) Passed MSV filter: 440 (0.0263821); expected 333.6 (0.02) Passed bias filter: 299 (0.0179278); expected 333.6 (0.02) Passed Vit filter: 21 (0.00125914); expected 16.7 (0.001) Passed Fwd filter: 2 (0.000119918); expected 0.2 (1e-05) Initial search space (Z): 16678 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.09u 0.01s 00:00:00.10 Elapsed: 00:00:00.04 # Mc/sec: 23093.23 // [ok]