# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/MT-A70.hmm.txt
# target sequence database: proteomes/Ciona_savignyi.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MT-A70 [M=172]
Accession: PF05063.13
Description: MT-A70
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.6e-58 196.8 0.0 4.1e-58 195.5 0.0 1.7 1 tr|H2Y8F1|H2Y8F1_CIOSA Uncharacterized protein OS=Ciona savi
2.2e-55 186.6 0.0 2.9e-55 186.2 0.0 1.1 1 tr|H2YW51|H2YW51_CIOSA Uncharacterized protein OS=Ciona savi
3e-40 137.3 1.3 3.6e-40 137.1 1.3 1.1 1 tr|H2Z3B7|H2Z3B7_CIOSA Uncharacterized protein OS=Ciona savi
Domain annotation for each sequence (and alignments):
>> tr|H2Y8F1|H2Y8F1_CIOSA Uncharacterized protein OS=Ciona savignyi OX=51511 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 195.5 0.0 1.1e-61 4.1e-58 1 172 [] 377 538 .. 377 538 .. 0.98
Alignments for each domain:
== domain 1 score: 195.5 bits; conditional E-value: 1.1e-61
ECEEEE---BHHCC..HTT--SS--B-HHHHHTS-GGGCECCEEEEEEEEETTCHHHHHHHHHHHCT-EEEEEEEEEEE-TTSCBS- CS
MT-A70 1 fdviiidPpweeklvarkkelpyktlneeelkaLpipelldkrslvflWvtnrellelkrellkkWglelveeltwlkinklgepia 87
f+vi++dPpw++++ elpy+t++++e++aL i++l d++ l+flWvt+r+++ + rel++ Wg+++++el+w+k+n+l+++i+
tr|H2Y8F1|H2Y8F1_CIOSA 377 FSVIMADPPWDIHM-----ELPYGTMQDDEMRALRIQDLSDDG-LMFLWVTGRAMELG-RELFDIWGYKRCDELIWVKTNQLQRLIR 456
89************.....9********************999.*************9.**************************** PP
BS-TTSSSBB-EEEEEEEEES---TTT.TTB-TTSSBSEEEEE-CTTTSS-THHHHHHHHHCTCS-EEEET--G..--TTEEEEETT CS
MT-A70 88 tlesgavlkkskEhllvgvkgnvkrstdkiinknvdtdliisperehsrKPpelfellehllesarkLelFaRs..lrpgwltvGne 172
t+++g+++++ kEh+lvg+kgn++ in++ d+d++++++r +s+KP+e++ l+e+l++++rkLelF+R l+p+w+t+Gn+
tr|H2Y8F1|H2Y8F1_CIOSA 457 TGRTGHWINHGKEHCLVGIKGNPQ-----GINRGLDCDVLVAEVRDTSHKPDEIYGLIERLSPGTRKLELFGRVhnLQPNWVTLGNQ 538
***********************8.....799*****************************************999*********97 PP
>> tr|H2YW51|H2YW51_CIOSA Uncharacterized protein OS=Ciona savignyi OX=51511 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 186.2 0.0 7.5e-59 2.9e-55 1 172 [] 28 202 .. 28 202 .. 0.94
Alignments for each domain:
== domain 1 score: 186.2 bits; conditional E-value: 7.5e-59
ECEEEE---BHHCC..HTT--SS--B-HHHHHTS-GGGCECCEEEEEEEEETTCHHHHHHHHHHHCT-EEEEEEEEEEE-TTSCBS- CS
MT-A70 1 fdviiidPpweeklvarkkelpyktlneeelkaLpipelldkrslvflWvtnrellelkrellkkWglelveeltwlkinklgepia 87
fdvi+i+Pp+ee+ +++ l + ++++++ L+++e++++rs+vflW++++ +l+ +r++lkkWg++++e+++w+k+n ++++
tr|H2YW51|H2YW51_CIOSA 28 FDVILIEPPLEEYKRQAGLPLTGQEATWDDIMSLEVEEVAAQRSFVFLWCGSSDGLDFGRQCLKKWGFRRCEDVCWIKTN-FKKT-N 112
9*************777779999*********************************************************.4444.4 PP
BS-TTSSSBB-EEEEEEEEES---TTT.T.TB-TTSSBSEEEE..E-CTTTSS-THHHHHHHHHCTCS-EEEET--G..--TTEEEE CS
MT-A70 88 tlesgavlkkskEhllvgvkgnvkrstdk.iinknvdtdliis..perehsrKPpelfellehllesarkLelFaRs..lrpgwltv 169
+l + + ++kEh+l+g+kg+v+rstd+ +i++nvd+dlii e ++ +KP+e+f+++eh++ ++r+L+lF+R+ +rpgwlt+
tr|H2YW51|H2YW51_CIOSA 113 KLLDDSLFVRTKEHCLMGIKGTVRRSTDGdFIHANVDIDLIIEeeGEPGSNEKPEEMFHIIEHFCLGRRRLHLFGRDtsIRPGWLTI 199
4667889************************************65567799**************************99******** PP
ETT CS
MT-A70 170 Gne 172
G++
tr|H2YW51|H2YW51_CIOSA 200 GPQ 202
*87 PP
>> tr|H2Z3B7|H2Z3B7_CIOSA Uncharacterized protein OS=Ciona savignyi OX=51511 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 137.1 1.3 9.3e-44 3.6e-40 1 172 [] 54 225 .. 54 225 .. 0.91
Alignments for each domain:
== domain 1 score: 137.1 bits; conditional E-value: 9.3e-44
ECEEEE---BHHCC..HTT--SS--B-HHHHHTS-GGGCECCEEEEEEEEETTCHHHH..HHHHHHHCT-EEEEEEEEEEE-TTSCB CS
MT-A70 1 fdviiidPpweeklvarkkelpyktlneeelkaLpipelldkrslvflWvtnrellel..krellkkWglelveeltwlkinklgep 85
f++i++dPpwe+k+v+r k +y l+ e++k++p+p+l+++++lv++Wvtn+ ++ + k+ l++ W +e ++++ w+k++k+g+p
tr|H2Z3B7|H2Z3B7_CIOSA 54 FNCIVMDPPWENKSVRRGK--KYDWLSLEDIKTIPLPDLAAPECLVVIWVTNKLKILNfvKEILFPFWSVEFITKWYWVKTTKFGKP 138
89****************9..9***********************************99888899********************** PP
S-BS-TTSSSBB-EEEEEEEEES---TTT.TTB-TTSSBSEEEE.E-CTTTSS-THHHHHHHHHC..TCS-EEEET--G--TTEEEE CS
MT-A70 86 iatlesgavlkkskEhllvgvkgnvkrstdkiinknvdtdliis.perehsrKPpelfellehll..esarkLelFaRslrpgwltv 169
i++ ++ +kk++E +++g + +k+++d+ ++++++ +i s p + hs+KPp+ l + + ++a++LelFaRsl p+w+++
tr|H2Z3B7|H2Z3B7_CIOSA 139 IFP--FENLHKKPYETMIIGKFS-PKHKMDQASDSDIKELVICSvPCSIHSHKPPLEAVLKRYANlsKDAKCLELFARSLVPHWTSW 222
**7..5568***********765.667999988888899999999**********6666665444669999**************** PP
ETT CS
MT-A70 170 Gne 172
Gne
tr|H2Z3B7|H2Z3B7_CIOSA 223 GNE 225
*97 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (172 nodes)
Target sequences: 11592 (4231397 residues searched)
Passed MSV filter: 367 (0.0316598); expected 231.8 (0.02)
Passed bias filter: 245 (0.0211353); expected 231.8 (0.02)
Passed Vit filter: 17 (0.00146653); expected 11.6 (0.001)
Passed Fwd filter: 3 (0.000258799); expected 0.1 (1e-05)
Initial search space (Z): 11592 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.05u 0.00s 00:00:00.05 Elapsed: 00:00:00.03
# Mc/sec: 24260.01
//
[ok]