# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/MT-A70.hmm.txt # target sequence database: proteomes/Ciona_savignyi.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: MT-A70 [M=172] Accession: PF05063.13 Description: MT-A70 Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-58 196.8 0.0 4.1e-58 195.5 0.0 1.7 1 tr|H2Y8F1|H2Y8F1_CIOSA Uncharacterized protein OS=Ciona savi 2.2e-55 186.6 0.0 2.9e-55 186.2 0.0 1.1 1 tr|H2YW51|H2YW51_CIOSA Uncharacterized protein OS=Ciona savi 3e-40 137.3 1.3 3.6e-40 137.1 1.3 1.1 1 tr|H2Z3B7|H2Z3B7_CIOSA Uncharacterized protein OS=Ciona savi Domain annotation for each sequence (and alignments): >> tr|H2Y8F1|H2Y8F1_CIOSA Uncharacterized protein OS=Ciona savignyi OX=51511 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 195.5 0.0 1.1e-61 4.1e-58 1 172 [] 377 538 .. 377 538 .. 0.98 Alignments for each domain: == domain 1 score: 195.5 bits; conditional E-value: 1.1e-61 ECEEEE---BHHCC..HTT--SS--B-HHHHHTS-GGGCECCEEEEEEEEETTCHHHHHHHHHHHCT-EEEEEEEEEEE-TTSCBS- CS MT-A70 1 fdviiidPpweeklvarkkelpyktlneeelkaLpipelldkrslvflWvtnrellelkrellkkWglelveeltwlkinklgepia 87 f+vi++dPpw++++ elpy+t++++e++aL i++l d++ l+flWvt+r+++ + rel++ Wg+++++el+w+k+n+l+++i+ tr|H2Y8F1|H2Y8F1_CIOSA 377 FSVIMADPPWDIHM-----ELPYGTMQDDEMRALRIQDLSDDG-LMFLWVTGRAMELG-RELFDIWGYKRCDELIWVKTNQLQRLIR 456 89************.....9********************999.*************9.**************************** PP BS-TTSSSBB-EEEEEEEEES---TTT.TTB-TTSSBSEEEEE-CTTTSS-THHHHHHHHHCTCS-EEEET--G..--TTEEEEETT CS MT-A70 88 tlesgavlkkskEhllvgvkgnvkrstdkiinknvdtdliisperehsrKPpelfellehllesarkLelFaRs..lrpgwltvGne 172 t+++g+++++ kEh+lvg+kgn++ in++ d+d++++++r +s+KP+e++ l+e+l++++rkLelF+R l+p+w+t+Gn+ tr|H2Y8F1|H2Y8F1_CIOSA 457 TGRTGHWINHGKEHCLVGIKGNPQ-----GINRGLDCDVLVAEVRDTSHKPDEIYGLIERLSPGTRKLELFGRVhnLQPNWVTLGNQ 538 ***********************8.....799*****************************************999*********97 PP >> tr|H2YW51|H2YW51_CIOSA Uncharacterized protein OS=Ciona savignyi OX=51511 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 186.2 0.0 7.5e-59 2.9e-55 1 172 [] 28 202 .. 28 202 .. 0.94 Alignments for each domain: == domain 1 score: 186.2 bits; conditional E-value: 7.5e-59 ECEEEE---BHHCC..HTT--SS--B-HHHHHTS-GGGCECCEEEEEEEEETTCHHHHHHHHHHHCT-EEEEEEEEEEE-TTSCBS- CS MT-A70 1 fdviiidPpweeklvarkkelpyktlneeelkaLpipelldkrslvflWvtnrellelkrellkkWglelveeltwlkinklgepia 87 fdvi+i+Pp+ee+ +++ l + ++++++ L+++e++++rs+vflW++++ +l+ +r++lkkWg++++e+++w+k+n ++++ tr|H2YW51|H2YW51_CIOSA 28 FDVILIEPPLEEYKRQAGLPLTGQEATWDDIMSLEVEEVAAQRSFVFLWCGSSDGLDFGRQCLKKWGFRRCEDVCWIKTN-FKKT-N 112 9*************777779999*********************************************************.4444.4 PP BS-TTSSSBB-EEEEEEEEES---TTT.T.TB-TTSSBSEEEE..E-CTTTSS-THHHHHHHHHCTCS-EEEET--G..--TTEEEE CS MT-A70 88 tlesgavlkkskEhllvgvkgnvkrstdk.iinknvdtdliis..perehsrKPpelfellehllesarkLelFaRs..lrpgwltv 169 +l + + ++kEh+l+g+kg+v+rstd+ +i++nvd+dlii e ++ +KP+e+f+++eh++ ++r+L+lF+R+ +rpgwlt+ tr|H2YW51|H2YW51_CIOSA 113 KLLDDSLFVRTKEHCLMGIKGTVRRSTDGdFIHANVDIDLIIEeeGEPGSNEKPEEMFHIIEHFCLGRRRLHLFGRDtsIRPGWLTI 199 4667889************************************65567799**************************99******** PP ETT CS MT-A70 170 Gne 172 G++ tr|H2YW51|H2YW51_CIOSA 200 GPQ 202 *87 PP >> tr|H2Z3B7|H2Z3B7_CIOSA Uncharacterized protein OS=Ciona savignyi OX=51511 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 137.1 1.3 9.3e-44 3.6e-40 1 172 [] 54 225 .. 54 225 .. 0.91 Alignments for each domain: == domain 1 score: 137.1 bits; conditional E-value: 9.3e-44 ECEEEE---BHHCC..HTT--SS--B-HHHHHTS-GGGCECCEEEEEEEEETTCHHHH..HHHHHHHCT-EEEEEEEEEEE-TTSCB CS MT-A70 1 fdviiidPpweeklvarkkelpyktlneeelkaLpipelldkrslvflWvtnrellel..krellkkWglelveeltwlkinklgep 85 f++i++dPpwe+k+v+r k +y l+ e++k++p+p+l+++++lv++Wvtn+ ++ + k+ l++ W +e ++++ w+k++k+g+p tr|H2Z3B7|H2Z3B7_CIOSA 54 FNCIVMDPPWENKSVRRGK--KYDWLSLEDIKTIPLPDLAAPECLVVIWVTNKLKILNfvKEILFPFWSVEFITKWYWVKTTKFGKP 138 89****************9..9***********************************99888899********************** PP S-BS-TTSSSBB-EEEEEEEEES---TTT.TTB-TTSSBSEEEE.E-CTTTSS-THHHHHHHHHC..TCS-EEEET--G--TTEEEE CS MT-A70 86 iatlesgavlkkskEhllvgvkgnvkrstdkiinknvdtdliis.perehsrKPpelfellehll..esarkLelFaRslrpgwltv 169 i++ ++ +kk++E +++g + +k+++d+ ++++++ +i s p + hs+KPp+ l + + ++a++LelFaRsl p+w+++ tr|H2Z3B7|H2Z3B7_CIOSA 139 IFP--FENLHKKPYETMIIGKFS-PKHKMDQASDSDIKELVICSvPCSIHSHKPPLEAVLKRYANlsKDAKCLELFARSLVPHWTSW 222 **7..5568***********765.667999988888899999999**********6666665444669999**************** PP ETT CS MT-A70 170 Gne 172 Gne tr|H2Z3B7|H2Z3B7_CIOSA 223 GNE 225 *97 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (172 nodes) Target sequences: 11592 (4231397 residues searched) Passed MSV filter: 367 (0.0316598); expected 231.8 (0.02) Passed bias filter: 245 (0.0211353); expected 231.8 (0.02) Passed Vit filter: 17 (0.00146653); expected 11.6 (0.001) Passed Fwd filter: 3 (0.000258799); expected 0.1 (1e-05) Initial search space (Z): 11592 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.05u 0.00s 00:00:00.05 Elapsed: 00:00:00.03 # Mc/sec: 24260.01 // [ok]