# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/MT-A70.hmm.txt # target sequence database: proteomes/Nematostella_vectensis.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: MT-A70 [M=172] Accession: PF05063.13 Description: MT-A70 Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-39 136.4 0.0 1.8e-39 135.8 0.0 1.3 1 tr|A7RRI2|A7RRI2_NEMVE Predicted protein (Fragment) OS=Nemat 1.4e-39 136.2 0.0 1.7e-39 135.9 0.0 1.1 1 tr|A7RW13|A7RW13_NEMVE Predicted protein (Fragment) OS=Nemat 1.1e-37 130.0 0.1 2e-37 129.2 0.1 1.4 1 tr|A7TAT7|A7TAT7_NEMVE Predicted protein (Fragment) OS=Nemat 3.4e-08 34.0 0.0 5.2e-08 33.4 0.0 1.2 1 tr|A7T3R6|A7T3R6_NEMVE Predicted protein (Fragment) OS=Nemat Domain annotation for each sequence (and alignments): >> tr|A7RRI2|A7RRI2_NEMVE Predicted protein (Fragment) OS=Nematostella vectensis OX=45351 GN=v1g33607 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 135.8 0.0 3e-43 1.8e-39 1 130 [. 119 236 .. 119 237 .] 0.97 Alignments for each domain: == domain 1 score: 135.8 bits; conditional E-value: 3e-43 ECEEEE---BHHCC..HTT--SS--B-HHHHHTS-GGGCECCEEEEEEEEETTCHHHHHHHHHHHCT-EEEEEEEEEEE-TTSCBS- CS MT-A70 1 fdviiidPpweeklvarkkelpyktlneeelkaLpipelldkrslvflWvtnrellelkrellkkWglelveeltwlkinklgepia 87 f+vi++dPpw++++ elpy+t++++e+++L +p+l+d++ +flWvt+r+++ + re+l+ Wg+e+++el+w+k+n+l+++i+ tr|A7RRI2|A7RRI2_NEMVE 119 FSVIMADPPWDIHM-----ELPYGTMSDDEMRNLSVPSLQDNG-YIFLWVTGRAMELG-RECLEIWGYERCDELIWVKTNQLQRLIR 198 89************.....9*********************99.*************9.**************************** PP BS-TTSSSBB-EEEEEEEEES---TTT.TTB-TTSSBSEEEEE CS MT-A70 88 tlesgavlkkskEhllvgvkgnvkrstdkiinknvdtdliisp 130 t+++g+++++ kEh+l+gvkg+++ +n+++d+d+++++ tr|A7RRI2|A7RRI2_NEMVE 199 TGRTGHWINHGKEHCLIGVKGDTT-----GFNRGMDCDVLVAE 236 ***********************8.....57889999999985 PP >> tr|A7RW13|A7RW13_NEMVE Predicted protein (Fragment) OS=Nematostella vectensis OX=45351 GN=v1g95490 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 135.9 0.0 2.8e-43 1.7e-39 1 172 [] 49 220 .. 49 220 .. 0.90 Alignments for each domain: == domain 1 score: 135.9 bits; conditional E-value: 2.8e-43 ECEEEE---BHHCC..HTT--SS--B-HHHHHTS-GGGCECCEEEEEEEEETTCHHHH..HHHHHHHCT-EEEEEEEEEEE-TTSCB CS MT-A70 1 fdviiidPpweeklvarkkelpyktlneeelkaLpipelldkrslvflWvtnrellel..krellkkWglelveeltwlkinklgep 85 fd+i+idPpw +k+ +rk+ y++++ ++kaLp+pel ++++l+++Wvtn++++ + ell++Wg+++++e+ w+k++k+ge tr|A7RW13|A7RW13_NEMVE 49 FDLIVIDPPWYNKSAKRKR--MYSFMSLWQIKALPVPELIAPGGLLAVWVTNKAKYIRftRSELLPSWGVDVIAEWHWIKVTKTGEY 133 89************88887..9*********************************9988899************************* PP S-BS-TTSSSBB-EEEEEEEEES.---TTT.TTB-TTSSBSEEEE.E-CTTTSS-THHHHHHHHHCTCS-.EEEET--G--TTEEEE CS MT-A70 86 iatlesgavlkkskEhllvgvkg.nvkrstdkiinknvdtdliis.perehsrKPpelfellehllesar.kLelFaRslrpgwltv 169 ++ +es +kk++E l++g + +s+d+ +++ + ++i s p +hsrKPp l ++ + +l++++ +Le+FaR+l+pgw+++ tr|A7RW13|A7RW13_NEMVE 134 VVGMESA--HKKPYETLIIGRLPiLPGASIDGGVKQVPEHQVICSvPCLKHSRKPP-LGDVFKDFLPRHPhCLEMFARNLTPGWTSW 217 *976655..9**********655156677877887766888999999*********.89999999966666**************** PP ETT CS MT-A70 170 Gne 172 Gn+ tr|A7RW13|A7RW13_NEMVE 218 GNQ 220 *97 PP >> tr|A7TAT7|A7TAT7_NEMVE Predicted protein (Fragment) OS=Nematostella vectensis OX=45351 GN=v1g224635 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 129.2 0.1 3.3e-41 2e-37 1 131 [. 30 173 .. 30 183 .. 0.87 Alignments for each domain: == domain 1 score: 129.2 bits; conditional E-value: 3.3e-41 ECEEEE---BHHCC..HTT.--SS--B-HHHHHTS-GGGCECCEEEEEEEEETTCHHHH..........HHHHHHHCT-EEEEEEEE CS MT-A70 1 fdviiidPpweeklvarkk.elpyktlneeelkaLpipelldkrslvflWvtnrellel..........krellkkWglelveeltw 76 fdvi++dPp+ee+ +++ + + k ++++++++L+i+e++++rs++flW++++e+l + + +l+kWg++++e+++w tr|A7TAT7|A7TAT7_NEMVE 30 FDVILVDPPLEEYQRRHAGvSFNFKPWTWDDIMKLDIEEVAAQRSFIFLWCGSHEGLTEgrkvqhlklkSDMCLRKWGFRRCEDICW 116 9************9655558999******************************99987754433344444579************** PP EEE-TTSCBS-..BS-TTSSSBB-EEEEEEEEES---TTT.T.TB-TTSSBSEEEEE- CS MT-A70 77 lkinklgepia..tlesgavlkkskEhllvgvkgnvkrstdk.iinknvdtdliispe 131 +k+nk++ + le+ a+++++kEh+l+g++g+v+rstd+ +i++nvd+dlii++e tr|A7TAT7|A7TAT7_NEMVE 117 IKTNKTNP-GNtkYLEPIAIFQHTKEHCLMGIRGTVRRSTDGdFIHANVDIDLIITEE 173 ****7664.332479999*************************************976 PP >> tr|A7T3R6|A7T3R6_NEMVE Predicted protein (Fragment) OS=Nematostella vectensis OX=45351 GN=v1g221917 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 33.4 0.0 8.6e-12 5.2e-08 130 165 .. 383 420 .. 355 423 .. 0.85 Alignments for each domain: == domain 1 score: 33.4 bits; conditional E-value: 8.6e-12 E-CTTTSS-THHHHHHHHHCTCS-EEEET--G..--TT CS MT-A70 130 perehsrKPpelfellehllesarkLelFaRs..lrpg 165 ++re+s+KP+e++ l+e+l++++rk+elF+R+ ++p+ tr|A7T3R6|A7T3R6_NEMVE 383 QVRETSHKPDEIYGLIERLSPGTRKIELFGRQhnVQPN 420 789****************************9777776 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (172 nodes) Target sequences: 24428 (8257945 residues searched) Passed MSV filter: 552 (0.022597); expected 488.6 (0.02) Passed bias filter: 400 (0.0163747); expected 488.6 (0.02) Passed Vit filter: 24 (0.000982479); expected 24.4 (0.001) Passed Fwd filter: 4 (0.000163747); expected 0.2 (1e-05) Initial search space (Z): 24428 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.12u 0.01s 00:00:00.13 Elapsed: 00:00:00.06 # Mc/sec: 23672.78 // [ok]