# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/MT-A70.hmm.txt # target sequence database: proteomes/Saccharomyces_cerevisiae.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: MT-A70 [M=172] Accession: PF05063.13 Description: MT-A70 Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-58 196.2 0.2 2.4e-58 195.3 0.2 1.4 1 sp|P41833|IME4_YEAST N6-adenosine-methyltransferase IME4 OS= 1.4e-13 49.6 0.1 2.2e-13 48.9 0.1 1.4 1 sp|P25583|KAR4_YEAST Karyogamy protein KAR4 OS=Saccharomyces Domain annotation for each sequence (and alignments): >> sp|P41833|IME4_YEAST N6-adenosine-methyltransferase IME4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 195.3 0.2 7.9e-62 2.4e-58 1 172 [] 342 504 .. 342 504 .. 0.99 Alignments for each domain: == domain 1 score: 195.3 bits; conditional E-value: 7.9e-62 ECEEEE---BHHCC..HTT--SS--B-HHHHHTS-GGGCECCEEEEEEEEETTCHHHHHHHHHHHCT-EEEEEEEEEEE-TTSCBS-BS CS MT-A70 1 fdviiidPpweeklvarkkelpyktlneeelkaLpipelldkrslvflWvtnrellelkrellkkWglelveeltwlkinklgepiatl 89 f+v+i+dP+w++++ +lpy+t+n+ el+ Lp++el+d++ ++flWvt+r+++ + +e+l++Wg+++++e++w+k+n+lg++i+t+ sp|P41833|IME4_YEAST 342 FSVVIADPAWNIHM-----NLPYGTCNDIELLGLPLHELQDEG-IIFLWVTGRAIELG-KESLNNWGYNVINEVSWIKTNQLGRTIVTG 423 89************.....9**********************9.***********999.****************************** PP -TTSSSBB-EEEEEEEEES---TTT.TTB-TTSSBSEEEEE-CTTTSS-THHHHHHHHHC.TCS-EEEET--G..--TTEEEEETT CS MT-A70 90 esgavlkkskEhllvgvkgnvkrstdkiinknvdtdliisperehsrKPpelfellehll.esarkLelFaRs..lrpgwltvGne 172 ++g++l++skEhllvg+kgn+k +ink++d+dli+s++re+srKP+el+ ++e+l+ ++arkLe+F+R+ +rpgw+t+Gn+ sp|P41833|IME4_YEAST 424 RTGHWLNHSKEHLLVGLKGNPK-----WINKHIDVDLIVSMTRETSRKPDELYGIAERLAgTHARKLEIFGRDhnTRPGWFTIGNQ 504 *********************9.....9********************************9***********************97 PP >> sp|P25583|KAR4_YEAST Karyogamy protein KAR4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=KA # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 48.9 0.1 7.4e-17 2.2e-13 29 167 .. 136 289 .. 111 294 .. 0.85 Alignments for each domain: == domain 1 score: 48.9 bits; conditional E-value: 7.4e-17 HHHHTS-GGGCECCEEEEEEEEETTCHHHHHHHHHHH..CT..-EEEEEEEEEEE-TTSCBS-...BS-TTSSSBB-EEEEEEEEES-- CS MT-A70 29 eelkaLpipelldkrslvflWvtnrellelkrellkk..Wg..lelveeltwlkinklgepia...tlesgavlkkskEhllvgvkgnv 110 + l++Lp++ l +k +++f+W ++++ el +ll++ W +++ eel ++ i k+ +p + + + + ++k h+ + ++g+v sp|P25583|KAR4_YEAST 136 PILTQLPLDRLISKPGFLFIWANSQKINEL-TKLLNNeiWAkkFRRSEELVFVPIDKK-SPFYpglDQDDETLMEKMQWHCWMCITGTV 222 56899****************999999999.7777755585449************55.555546688889999*************** PP -TTT.T.TB-TTSSBSEEEE.E-CTTTSS-THHHHHHHHHCTCS-EEEET.--G.......--TTEE CS MT-A70 111 krstdk.iinknvdtdliis.perehsrKPpelfellehllesarkLelF.aRs.......lrpgwl 167 +rstd+ i+ nvdtdl i + + + P+ l+ ++e +++ +r+L++ aR +rpgw+ sp|P25583|KAR4_YEAST 223 RRSTDGhLIHCNVDTDLSIEtKDTTNGAVPSHLYRIAENFSTATRRLHIIpARTgyetpvkVRPGWV 289 ****************9988677788899*******************8647767777777777776 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (172 nodes) Target sequences: 6049 (2936363 residues searched) Passed MSV filter: 157 (0.0259547); expected 121.0 (0.02) Passed bias filter: 98 (0.016201); expected 121.0 (0.02) Passed Vit filter: 7 (0.00115722); expected 6.0 (0.001) Passed Fwd filter: 2 (0.000330633); expected 0.1 (1e-05) Initial search space (Z): 6049 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.04u 0.00s 00:00:00.04 Elapsed: 00:00:00.02 # Mc/sec: 25252.72 // [ok]