# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/MT-A70.hmm.txt # target sequence database: proteomes/Strongylocentrotus_purpuratus.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: MT-A70 [M=172] Accession: PF05063.13 Description: MT-A70 Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.6e-33 116.0 0.0 5.4e-22 79.2 0.0 2.2 2 tr|W4Z3Z9|W4Z3Z9_STRPU Uncharacterized protein OS=Strongyloc 6e-13 49.7 0.0 1.3e-12 48.6 0.0 1.6 1 tr|W4YP31|W4YP31_STRPU Uncharacterized protein OS=Strongyloc Domain annotation for each sequence (and alignments): >> tr|W4Z3Z9|W4Z3Z9_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 35.6 0.0 9.5e-13 1.4e-08 1 58 [. 174 231 .. 174 234 .. 0.89 2 ! 79.2 0.0 3.8e-26 5.4e-22 98 172 .] 233 312 .. 228 312 .. 0.96 Alignments for each domain: == domain 1 score: 35.6 bits; conditional E-value: 9.5e-13 ECEEEE---BHHCC..HTT.--SS--B-HHHHHTS-GGGCECCEEEEEEEEETTCHHHH CS MT-A70 1 fdviiidPpweeklvarkk.elpyktlneeelkaLpipelldkrslvflWvtnrellel 58 fd+i + Pp+ee+ +r ++k+++++++++L+ip++ + rs++flWv+++ +l tr|W4Z3Z9|W4Z3Z9_STRPU 174 FDCIHVAPPLEEYR-HRPGvITNQKFWSWDDIMRLDIPSISSFRSFIFLWVGSSDGLAR 231 8**********998.5555477899****************************998765 PP == domain 2 score: 79.2 bits; conditional E-value: 3.8e-26 -EEEEEEEEES---TTT.T.TB-TTSSBSEEEE..E-CTTTSS-THHHHHHHHHCTCS-EEEET--G..--TTEEEEETT CS MT-A70 98 skEhllvgvkgnvkrstdk.iinknvdtdliis..perehsrKPpelfellehllesarkLelFaRs..lrpgwltvGne 172 Eh+l+g+kg+v+rstd+ +i++n+d d+ii+ pe+++ +KP+e+f+l+eh++ ++r+L++F+ + +rpgwlt+G++ tr|W4Z3Z9|W4Z3Z9_STRPU 233 REEHCLMGIKGTVRRSTDGdFIHANIDLDVIITeePETGSLEKPEEIFHLIEHFCLGRRRLNIFGNDqtIRPGWLTIGPQ 312 57*******************************999999***************************999*********87 PP >> tr|W4YP31|W4YP31_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 48.6 0.0 9.1e-17 1.3e-12 1 57 [. 251 301 .. 251 311 .. 0.92 Alignments for each domain: == domain 1 score: 48.6 bits; conditional E-value: 9.1e-17 ECEEEE---BHHCC..HTT--SS--B-HHHHHTS-GGGCECCEEEEEEEEETTCHHH CS MT-A70 1 fdviiidPpweeklvarkkelpyktlneeelkaLpipelldkrslvflWvtnrelle 57 f+vi++dPpw++++ elpy+t++++e+++L++p ++d++ +flWvt++++ + tr|W4YP31|W4YP31_STRPU 251 FSVIMADPPWDIHM-----ELPYGTMQDDEMRKLNVPLMQDEG-CIFLWVTGSTVGK 301 89************.....9******************99999.89******98755 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (172 nodes) Target sequences: 28594 (14266044 residues searched) Passed MSV filter: 707 (0.0247255); expected 571.9 (0.02) Passed bias filter: 500 (0.0174862); expected 571.9 (0.02) Passed Vit filter: 31 (0.00108414); expected 28.6 (0.001) Passed Fwd filter: 2 (6.99447e-05); expected 0.3 (1e-05) Initial search space (Z): 28594 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.19u 0.01s 00:00:00.20 Elapsed: 00:00:00.09 # Mc/sec: 27264.00 // [ok]