# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/MT-A70.hmm.txt
# target sequence database:        proteomes/Trichoplax_adhaerens.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       MT-A70  [M=172]
Accession:   PF05063.13
Description: MT-A70
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
      3e-16   59.2   0.0    1.2e-13   50.7   0.0    2.4  2  tr|B3S3T4|B3S3T4_TRIAD  Uncharacterized protein OS=Trichoplax


Domain annotation for each sequence (and alignments):
>> tr|B3S3T4|B3S3T4_TRIAD  Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_58838 PE=4 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0   0.00019       2.2      22      53 ..     173     204 ..     163     209 .. 0.85
   2 !   50.7   0.0   1.1e-17   1.2e-13      80     172 .]     200     299 ..     198     299 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00019
                             SS--B-HHHHHTS-GGGCECCEEEEEEEEETT CS
                  MT-A70  22 pyktlneeelkaLpipelldkrslvflWvtnr 53 
                             +y+ l++++l++Lpi ell+ ++lv+l  +++
  tr|B3S3T4|B3S3T4_TRIAD 173 KYHWLTTDQLLQLPITELLARHGLVVLTTGGE 204
                             578899*******************9976665 PP

  == domain 2  score: 50.7 bits;  conditional E-value: 1.1e-17
                             -TTSCBS-BS-TTSSSBB-EEEEEEEEES---TTT.TTB-TTS........SBSEEEE.E-CTTTSS-THHHHHHHHHC.TCS-EEE CS
                  MT-A70  80 nklgepiatlesgavlkkskEhllvgvkgnvkrstdkiinknv........dtdliis.perehsrKPpelfellehll.esarkLe 156
                             ++ ge +++l+s   +kk++E ll+gvk+  ++     + ++         + ++i s p+ +hs+KPp l  +  ++  e+ ++Le
  tr|B3S3T4|B3S3T4_TRIAD 200 TTGGEFVYDLDSS--HKKPYEILLIGVKSGLSEDLPSACSSELpesiaafpKHNVICSiPSLVHSHKPP-LDGIFARFIrEQPNCLE 283
                             5567788887776..9*************998877654444434455778778888889**********.89999999956666*** PP

                             ET--G--TTEEEEETT CS
                  MT-A70 157 lFaRslrpgwltvGne 172
                             +FaRsl p+w+++Gne
  tr|B3S3T4|B3S3T4_TRIAD 284 MFARSLIPHWTSWGNE 299
                             **************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (172 nodes)
Target sequences:                        11518  (5222075 residues searched)
Passed MSV filter:                       376  (0.0326446); expected 230.4 (0.02)
Passed bias filter:                      252  (0.0218788); expected 230.4 (0.02)
Passed Vit filter:                        17  (0.00147595); expected 11.5 (0.001)
Passed Fwd filter:                         2  (0.000173641); expected 0.1 (1e-05)
Initial search space (Z):              11518  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.09u 0.00s 00:00:00.09 Elapsed: 00:00:00.04
# Mc/sec: 22454.92
//
[ok]