# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/MT-A70.hmm.txt # target sequence database: proteomes/Xenopus_tropicalis.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: MT-A70 [M=172] Accession: PF05063.13 Description: MT-A70 Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.7e-60 204.3 0.0 3.7e-60 203.2 0.0 1.6 1 tr|Q28H22|Q28H22_XENTR Methyltransferase-like 3 OS=Xenopus t 3.6e-58 196.7 0.0 5.1e-58 196.2 0.0 1.2 1 sp|Q66KJ9|MET14_XENTR N6-adenosine-methyltransferase non-ca Domain annotation for each sequence (and alignments): >> tr|Q28H22|Q28H22_XENTR Methyltransferase-like 3 OS=Xenopus tropicalis OX=8364 GN=mettl3 PE=2 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 203.2 0.0 3.1e-64 3.7e-60 1 172 [] 382 543 .. 382 543 .. 0.98 Alignments for each domain: == domain 1 score: 203.2 bits; conditional E-value: 3.1e-64 ECEEEE---BHHCC..HTT--SS--B-HHHHHTS-GGGCECCEEEEEEEEETTCHHHHHHHHHHHCT-EEEEEEEEEEE-TTSCBS- CS MT-A70 1 fdviiidPpweeklvarkkelpyktlneeelkaLpipelldkrslvflWvtnrellelkrellkkWglelveeltwlkinklgepia 87 f+v+++dPpw++++ elpy+tl+++e+++L+ip+l+d++ ++flWvt+r+++ + re+lk Wg+e+v+e++w+k+n+l+++i+ tr|Q28H22|Q28H22_XENTR 382 FSVVMADPPWDIHM-----ELPYGTLTDDEMRKLQIPVLQDDG-FLFLWVTGRAMELG-RECLKLWGYERVDEIIWVKTNQLQRIIR 461 89************.....9*********************99.*************9.**************************** PP BS-TTSSSBB-EEEEEEEEES---TTT.TTB-TTSSBSEEEEE-CTTTSS-THHHHHHHHHCTCS-EEEET--G..--TTEEEEETT CS MT-A70 88 tlesgavlkkskEhllvgvkgnvkrstdkiinknvdtdliisperehsrKPpelfellehllesarkLelFaRs..lrpgwltvGne 172 t+++g++l++ kEh+lvgvkgn++ +n++ d+d+i++++r++s+KP+e++ ++e+l++++rk+elF+R ++p+w+t+Gn+ tr|Q28H22|Q28H22_XENTR 462 TGRTGHWLNHGKEHCLVGVKGNPQ-----GFNRGLDCDVIVAEVRSTSHKPDEIYGMIERLSPGTRKIELFGRPhnVQPNWITLGNQ 543 ***********************8.....67899***************************************999*********97 PP >> sp|Q66KJ9|MET14_XENTR N6-adenosine-methyltransferase non-catalytic subunit OS=Xenopus tropicalis OX=8364 GN=mettl14 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 196.2 0.0 4.2e-62 5.1e-58 1 171 [. 186 362 .. 186 363 .. 0.95 Alignments for each domain: == domain 1 score: 196.2 bits; conditional E-value: 4.2e-62 ECEEEE---BHHCC..HTT--SS--B-HHHHHTS-GGGCECCEEEEEEEEETTCHHHHHHHHHHHCT-EEEEEEEEEEE-TTSC.BS- CS MT-A70 1 fdviiidPpweeklvarkkelpyktlneeelkaLpipelldkrslvflWvtnrellelkrellkkWglelveeltwlkinklge.pia 87 fdvi+++Pp+ee+ ++ +++k +++e++++L+i+ ++ r++vflW+++ e+l+ +r +l+kWg+++ e+++w+k+nk++ +++ sp|Q66KJ9|MET14_XENTR 186 FDVILLEPPLEEYFRETGIAANEKWWTWEDIMKLDIEGIAGSRAFVFLWCGSGEGLDFGRMCLRKWGFRRSEDICWIKTNKDNPgKTK 273 9*************555559************************************************************77752455 PP BS-TTSSSBB-EEEEEEEEES---TTT.T.TB-TTSSBSEEEE..E-CTTTSS-THHHHHHHHHCTCS-EEEET--G..--TTEEEEE CS MT-A70 88 tlesgavlkkskEhllvgvkgnvkrstdk.iinknvdtdliis..perehsrKPpelfellehllesarkLelFaRs..lrpgwltvG 170 tl+++a+++++kEh+l+g+kg+v+rstd+ +i++nvd+dlii+ pe+++++KP e+f+++eh++ ++r+L+lF+R+ +rpgwltvG sp|Q66KJ9|MET14_XENTR 274 TLDPKAIFQRTKEHCLMGIKGTVHRSTDGdFIHANVDIDLIITeePEIGNIEKPVEIFHIIEHFCLGRRRLHLFGRDstIRPGWLTVG 361 9******************************************999****************************************** PP T CS MT-A70 171 n 171 + sp|Q66KJ9|MET14_XENTR 362 P 362 7 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (172 nodes) Target sequences: 24182 (11782085 residues searched) Passed MSV filter: 638 (0.0263833); expected 483.6 (0.02) Passed bias filter: 430 (0.0177818); expected 483.6 (0.02) Passed Vit filter: 21 (0.000868415); expected 24.2 (0.001) Passed Fwd filter: 2 (8.27061e-05); expected 0.2 (1e-05) Initial search space (Z): 24182 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.15u 0.01s 00:00:00.16 Elapsed: 00:00:00.08 # Mc/sec: 25331.48 // [ok]