# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/MTS.hmm.txt # target sequence database: proteomes/Dictyostelium_discoideum.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: MTS [M=169] Accession: PF05175.13 Description: Methyltransferase small domain Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.6e-09 34.7 0.0 1.3e-08 34.1 0.0 1.2 1 tr|Q54UI9|Q54UI9_DICDI Uncharacterized protein OS=Dictyostel 7.4e-08 31.6 0.0 9.1e-08 31.3 0.0 1.1 1 tr|Q54Y42|Q54Y42_DICDI Protein-lysine N-methyltransferase DD 1.1e-07 31.1 1.3 0.0006 18.9 0.0 2.4 2 tr|Q54XZ7|Q54XZ7_DICDI Uncharacterized protein OS=Dictyostel 7e-07 28.5 0.1 1.4e-06 27.5 0.1 1.4 1 sp|Q54HI0|ANM2_DICDI Protein arginine N-methyltransferase 8.6e-07 28.2 0.1 2.4e-06 26.7 0.0 1.7 2 sp|Q8T199|OMT3_DICDI O-methyltransferase 3 OS=Dictyosteliu 9.4e-07 28.0 0.1 1.7e-06 27.2 0.1 1.3 1 tr|Q552E3|Q552E3_DICDI Uncharacterized protein OS=Dictyostel 2.6e-06 26.6 0.0 0.00027 20.0 0.0 2.4 2 tr|Q54BE9|Q54BE9_DICDI Uncharacterized protein OS=Dictyostel 7.6e-06 25.1 0.0 1.3e-05 24.3 0.0 1.3 1 sp|Q86JB0|Y8324_DICDI Putative uncharacterized protein DDB_ 1.1e-05 24.6 0.0 1.6e-05 24.0 0.0 1.2 1 tr|Q54VE3|Q54VE3_DICDI Uncharacterized protein OS=Dictyostel 1.4e-05 24.2 0.0 0.0007 18.7 0.0 2.1 2 tr|Q54FL8|Q54FL8_DICDI Uncharacterized protein OS=Dictyostel 1.7e-05 23.9 0.0 3.1e-05 23.1 0.0 1.4 1 tr|Q54BE3|Q54BE3_DICDI Uncharacterized protein OS=Dictyostel 2.3e-05 23.5 0.0 3.8e-05 22.8 0.0 1.3 1 tr|Q54BE2|Q54BE2_DICDI Uncharacterized protein OS=Dictyostel 2.3e-05 23.5 0.0 3.4e-05 23.0 0.0 1.2 1 tr|Q54UI8|Q54UI8_DICDI Uncharacterized protein OS=Dictyostel 5.8e-05 22.2 0.1 9.3e-05 21.6 0.1 1.3 1 sp|Q54EF2|ANM1_DICDI Protein arginine N-methyltransferase 5.9e-05 22.2 1.9 0.00012 21.2 0.0 2.3 2 sp|Q54WD6|TRM5_DICDI tRNA (guanine(37)-N1)-methyltransfera 7e-05 22.0 0.0 0.00012 21.2 0.0 1.3 1 tr|Q54QG2|Q54QG2_DICDI Uncharacterized protein OS=Dictyostel 8e-05 21.8 0.0 0.00014 21.0 0.0 1.4 1 tr|Q54PP5|Q54PP5_DICDI Uncharacterized protein OS=Dictyostel 8.4e-05 21.7 0.0 0.00014 21.0 0.0 1.3 1 tr|Q54NK9|Q54NK9_DICDI Uncharacterized protein OS=Dictyostel 0.00029 19.9 0.0 0.00068 18.7 0.0 1.5 1 tr|Q54C42|Q54C42_DICDI Uncharacterized protein OS=Dictyostel 0.00081 18.5 0.0 0.0024 17.0 0.0 1.8 1 tr|Q54GQ2|Q54GQ2_DICDI Uncharacterized protein OS=Dictyostel 0.0011 18.0 0.0 0.0017 17.4 0.0 1.2 1 tr|Q55BF7|Q55BF7_DICDI Uncharacterized protein OS=Dictyostel 0.0013 17.8 0.0 0.0028 16.8 0.0 1.5 1 tr|Q86I59|Q86I59_DICDI Methyltransferase-like protein OS=Dic 0.0016 17.5 0.0 0.0084 15.2 0.0 2.0 3 tr|Q55GB9|Q55GB9_DICDI Uncharacterized protein OS=Dictyostel 0.0019 17.3 0.0 0.0035 16.4 0.0 1.4 1 tr|Q557I0|Q557I0_DICDI Uncharacterized protein OS=Dictyostel 0.002 17.2 0.2 0.0041 16.2 0.2 1.5 1 sp|Q54XD0|COQ3_DICDI Ubiquinone biosynthesis O-methyltrans 0.0023 17.0 0.0 0.0055 15.8 0.0 1.8 1 tr|Q54LN7|Q54LN7_DICDI Uncharacterized protein OS=Dictyostel 0.0038 16.3 0.2 0.0069 15.5 0.1 1.4 1 tr|Q54VU9|Q54VU9_DICDI Uncharacterized protein OS=Dictyostel 0.0049 16.0 0.0 0.011 14.8 0.0 1.5 1 tr|Q553T0|Q553T0_DICDI Uncharacterized protein OS=Dictyostel 0.0058 15.7 0.0 0.0058 15.7 0.0 2.7 2 sp|Q54CP1|RRP8_DICDI Ribosomal RNA-processing protein 8 OS 0.007 15.4 0.0 0.014 14.4 0.0 1.5 1 sp|Q86JJ0|TRM61_DICDI tRNA (adenine(58)-N(1))-methyltransfe ------ inclusion threshold ------ 0.011 14.8 0.0 0.024 13.7 0.0 1.6 1 sp|Q9GPS6|PIMT_DICDI Probable protein-L-isoaspartate O-met 0.012 14.7 0.0 0.019 14.1 0.0 1.3 1 sp|Q551M3|TRMB_DICDI tRNA (guanine-N(7)-)-methyltransferas 0.016 14.3 0.0 0.025 13.6 0.0 1.3 1 sp|Q54QK7|DIM1_DICDI Probable dimethyladenosine transferas 0.022 13.8 0.2 0.046 12.8 0.2 1.6 1 sp|Q54JW0|NDUF5_DICDI Arginine-hydroxylase NDUFAF5, mitocho 0.1 11.6 0.0 0.2 10.7 0.0 1.5 1 sp|Q54B59|OMT12_DICDI O-methyltransferase 12 OS=Dictyosteli 0.11 11.6 0.0 0.16 11.1 0.0 1.3 1 sp|Q55DH6|NTM1_DICDI Alpha N-terminal protein methyltransf Domain annotation for each sequence (and alignments): >> tr|Q54UI9|Q54UI9_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB_G0281053 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 34.1 0.0 3.6e-11 1.3e-08 30 100 .. 47 120 .. 26 123 .. 0.84 Alignments for each domain: == domain 1 score: 34.1 bits; conditional E-value: 3.6e-11 CTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC...EEEEE-STTTTSTTS-EEE CS MTS 30 elsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle...vevvasdvleeveekkfdl 100 +++ k+lD+G+G+Gvl++ + ++p+ e+ ++d+++ ++s + ++ n+++ ++v+ + + e++ ++fd+ tr|Q54UI9|Q54UI9_DICDI 47 NENIKILDVGAGFGVLSIYASTNYPNSEIIATDISKCMIDSLNYSIQGNQIKnvtAKVMDGQSMPELQSESFDY 120 35668**********************************************99777788888888888899987 PP >> tr|Q54Y42|Q54Y42_DICDI Protein-lysine N-methyltransferase DDB0205448 OS=Dictyostelium discoideum OX=44689 GN=DDB0205 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.3 0.0 2.6e-10 9.1e-08 24 141 .. 58 177 .. 55 204 .. 0.78 Alignments for each domain: == domain 1 score: 31.3 bits; conditional E-value: 2.6e-10 HHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC.EEEEE-STTT.TSTTS-EEEEEE---ST CS MTS 24 letlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle.vevvasdvle.eveekkfdlivsNPPfh 108 l+ l+k ++ k++DlGcG+G+ ++l k + +++ d + + +e+ak+ +e+++++ ++++ d+++ ++e+ +d+++ f tr|Q54Y42|Q54Y42_DICDI 58 LSELNK-ETSKIIDLGCGNGMTLIELSKLGFK-KLDGSDYSDKGIELAKRIMEQEGFNhINYFVDDITDsKIEQYVYDAVLDKGTFD 142 566777.5568**********99999998877.8************************9*******98626778899***9999998 PP TTC.HCHHHHHHHHHHHH.HHHEEEEEEEEEEEET CS MTS 109 agk.atelavaeeliaeA.keaLkegGeLliVanr 141 a ++ + +++l ++ +++Lk++G ++i + tr|Q54Y42|Q54Y42_DICDI 143 AIAlSEDRDRMKQLYKQHvEHILKPDGIFVITSCN 177 86546667777777766515668889887776555 PP >> tr|Q54XZ7|Q54XZ7_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB0205497 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.9 0.0 1.7e-06 0.0006 31 85 .. 141 197 .. 124 217 .. 0.79 2 ! 11.0 0.3 0.00047 0.17 90 112 .. 227 249 .. 203 258 .. 0.81 Alignments for each domain: == domain 1 score: 18.9 bits; conditional E-value: 1.7e-06 TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC..EEEE CS MTS 31 lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle..vevv 85 + +k+lDlG+G+G l ++ ++e ++ + +d++ +Al +a++n+ + l+ v+++ tr|Q54XZ7|Q54XZ7_DICDI 141 KIKKILDLGTGTGCLLLSTLNEFKDSIGVGIDKSNEALIIANKNAIELSLDkrVSLL 197 4578*********************9999***************9999888553333 PP == domain 2 score: 11.0 bits; conditional E-value: 0.00047 TTTSTTS-EEEEEE---STTTCH CS MTS 90 leeveekkfdlivsNPPfhagka 112 +++ +++kfdl++sNPP+ ++++ tr|Q54XZ7|Q54XZ7_DICDI 227 TNNENNEKFDLVISNPPYISNEE 249 4555669**********987766 PP >> sp|Q54HI0|ANM2_DICDI Protein arginine N-methyltransferase 2 OS=Dictyostelium discoideum OX=44689 GN=prmt2 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.5 0.1 4e-09 1.4e-06 31 103 .. 158 230 .. 143 232 .. 0.84 Alignments for each domain: == domain 1 score: 27.5 bits; conditional E-value: 4e-09 TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC..EEEEE-STTTTSTTS-EEEEEE CS MTS 31 lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle..vevvasdvleeveekkfdlivs 103 +++ vlD+GcG+G+l++ +ak+ + +v +vd++ +A a+ +++n+l+ v+v++ + + + ++ +d+ivs sp|Q54HI0|ANM2_DICDI 158 KDKVVLDVGCGTGILSCFVAKAGAK-KVYAVDASDMAH-RAELIVQQNGLAdiVTVFKGKLEHIAFPEYVDVIVS 230 45679****************9888.8*********95.578999999998877777777777777899999997 PP >> sp|Q8T199|OMT3_DICDI O-methyltransferase 3 OS=Dictyostelium discoideum OX=44689 GN=omt3 PE=2 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.8 0.0 8 2.8e+03 62 101 .. 33 72 .. 23 94 .. 0.68 2 ! 26.7 0.0 6.8e-09 2.4e-06 26 93 .. 190 259 .. 188 307 .. 0.76 Alignments for each domain: == domain 1 score: -2.8 bits; conditional E-value: 8 ESBHHHHHHHHHHHHHTTGCEEEEE-STTTTSTTS-EEEE CS MTS 62 dvdarAlesakenleanklevevvasdvleeveekkfdli 101 d++++ +e ++ + +++ + v +++ + ++ek+ d+i sp|Q8T199|OMT3_DICDI 33 DKEKQVVEEIQTETSWADVDWDSVRESIAKSITEKETDII 72 5555566666666666666666666677777777777766 PP == domain 2 score: 26.7 bits; conditional E-value: 6.8e-09 HCHCC..TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGCEEEEE-STTTTS CS MTS 26 tlpke..lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleanklevevvasdvleev 93 l+++ ++ +vl +GcG+G+ l+k +pe ++d + +A+++ k n n+++++++ +d+ e sp|Q8T199|OMT3_DICDI 190 ELTNDesKKLTVLEIGCGTGATVYPLLKLNPEKYFYVFDFSPHAVNLVKSNSLYNEAKLNAFVCDIATEQ 259 56666334556***********************************************999999987653 PP >> tr|Q552E3|Q552E3_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB_G0276237 PE=3 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.2 0.1 4.9e-09 1.7e-06 31 103 .. 46 121 .. 37 123 .. 0.82 Alignments for each domain: == domain 1 score: 27.2 bits; conditional E-value: 4.9e-09 TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC.....EEEEE-STTTTSTTS-EEEEEE CS MTS 31 lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle.....vevvasdvleeveekkfdlivs 103 +++ v+D+G+G+G+l++ +ak+ + +v +++ + +A +++ +++nkl+ v+ + +++++e+e++k+d+i+s tr|Q552E3|Q552E3_DICDI 46 QDKVVIDVGSGTGILSMFAAKAGAK-RVYAIEGSLMAGYCSQL-VQHNKLDsiikvVHKRMEEITDEIEDEKVDIIIS 121 45679***************98888.8**********877664.778888878445555667899***********97 PP >> tr|Q54BE9|Q54BE9_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB0192076 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.0 0.0 7.6e-07 0.00027 33 77 .. 113 157 .. 104 184 .. 0.89 2 ? 4.0 0.0 0.063 22 85 121 .. 223 259 .. 205 273 .. 0.73 Alignments for each domain: == domain 1 score: 20.0 bits; conditional E-value: 7.6e-07 SEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHH CS MTS 33 gkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenlea 77 + +lD+G+G+ vl++++ ++ + ++ +d+d A++ ak n+ + tr|Q54BE9|Q54BE9_DICDI 113 KYILDIGTGTNVLSIMMGQRFRKSIINSIDIDDSAIAQAKINIDT 157 569*************************************99875 PP == domain 2 score: 4.0 bits; conditional E-value: 0.063 EE-STTTTSTTS-EEEEEE---STTTCHCHHHHHHHH CS MTS 85 vasdvleeveekkfdlivsNPPfhagkatelavaeel 121 + + ++ +dli+s PP+ +++ v+ ++ tr|Q54BE9|Q54BE9_DICDI 223 KQGKSYTPSVDGYYDLIISAPPYFPTDPVNDLVVSNM 259 4445566666899*********988877777777776 PP >> sp|Q86JB0|Y8324_DICDI Putative uncharacterized protein DDB_G0277003 OS=Dictyostelium discoideum OX=44689 GN=DDB_G027 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.3 0.0 3.6e-08 1.3e-05 20 92 .. 156 228 .. 140 238 .. 0.83 Alignments for each domain: == domain 1 score: 24.3 bits; conditional E-value: 3.6e-08 HHHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGCEEEEE-STTTT CS MTS 20 sklLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleanklevevvasdvlee 92 s+++l++ + +++++l lG+G+G++g+ l +p +v l+d + + l+ k n+e n+le++ + +d ++ sp|Q86JB0|Y8324_DICDI 156 SDFILSNQNLFINKNILELGSGTGLVGIILDFIKPLKKVILTDYSPKVLKNLKFNMELNNLEIQDFINDDDDD 228 55666666666999************************************************77666665444 PP >> tr|Q54VE3|Q54VE3_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB0205190 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.0 0.0 4.6e-08 1.6e-05 31 94 .. 46 110 .. 30 119 .. 0.78 Alignments for each domain: == domain 1 score: 24.0 bits; conditional E-value: 4.6e-08 TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC..EEEEE-STTTTST CS MTS 31 lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle..vevvasdvleeve 94 ++ vlDlGcG G + + +ak++ + +d++ + ++sa+en+++++++ v + +d +e tr|Q54VE3|Q54VE3_DICDI 46 SDDVVLDLGCGDGRIVIYAAKHYGI-RGIGLDINPELIKSANENAKKEGVDhlVLFKVQDFANESF 110 46679***************98887.56678*******************9866666666666554 PP >> tr|Q54FL8|Q54FL8_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB_G0290773 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.7 0.0 2e-06 0.0007 38 82 .. 34 77 .. 29 91 .. 0.87 2 ? 4.2 0.0 0.059 21 115 145 .. 91 121 .. 80 132 .. 0.75 Alignments for each domain: == domain 1 score: 18.7 bits; conditional E-value: 2e-06 ET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGCE CS MTS 38 lGcGaGvlgaalakespeaevtlvdvdarAlesakenleanklev 82 +G G G++++++ k+ + +vt vd++ +A++++ n+++n+ e+ tr|Q54FL8|Q54FL8_DICDI 34 VGVGSGLISLSVSKFAKA-TVTGVDINPNAVNITFPNFKNNNNEI 77 799**********97665.9*********************9884 PP == domain 2 score: 4.2 bits; conditional E-value: 0.059 HHHHHHHHHHHHHHEEEEEEEEEEEETTSCH CS MTS 115 lavaeeliaeAkeaLkegGeLliVanrklgy 145 + + ++ ++e+k++L+++G+Ll+ + ++ ++ tr|Q54FL8|Q54FL8_DICDI 91 YVLLRRYVEESKDFLTPDGSLLLGTCNFANI 121 5567899**************9866666655 PP >> tr|Q54BE3|Q54BE3_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB0192083 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.1 0.0 8.9e-08 3.1e-05 7 81 .. 12 92 .. 8 119 .. 0.74 Alignments for each domain: == domain 1 score: 23.1 bits; conditional E-value: 8.9e-08 ETTSTTTTS--HHHHHHH.HHCHCC..TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBH....HHHHHHHHHHHHTTGC CS MTS 7 lpgvFskdklDkGsklLl.etlpke..lsgkvlDlGcGaGvlgaalakespeaevtlvdvda....rAlesakenleankle 81 l ++Fs +k+ + Ll +++p e ++g+v+DlGcG+G ++ ++ + ++ vd++ +A+e+ k n ++n+ + tr|Q54BE3|Q54BE3_DICDI 12 LLNIFSIKKITLENETLLnSKIPWEiiKNGNVIDLGCGNGWFCREMIEKGVN-QIIGVDISEklikKAIELNKDNNNNNNNN 92 567899888888776655267888888999***************9998777.67788888611225777777666666544 PP >> tr|Q54BE2|Q54BE2_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB0192084 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.8 0.0 1.1e-07 3.8e-05 21 91 .. 27 98 .. 11 112 .. 0.79 Alignments for each domain: == domain 1 score: 22.8 bits; conditional E-value: 1.1e-07 HHHHHHCHCC..TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGCEEEEE-STTT CS MTS 21 klLletlpke..lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleanklevevvasdvle 91 lL + +p e ++g+v+D+GcG+G ++ ++ + ++ vd++ + ++ a e ++n+ + +++ +d+ + tr|Q54BE2|Q54BE2_DICDI 27 TLLFSMIPWEivKNGNVIDFGCGNGWFCREMIEKGVN-QIIGVDISEKLIKKAIELNKDNNEKSKYYVTDLDN 98 466777787788999****************998877.7999*****99999999888888888888888765 PP >> tr|Q54UI8|Q54UI8_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB0203978 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.0 0.0 9.6e-08 3.4e-05 31 99 .. 49 122 .. 36 126 .. 0.77 Alignments for each domain: == domain 1 score: 23.0 bits; conditional E-value: 9.6e-08 TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC...EEEEE-STTTTST..TS-EE CS MTS 31 lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle...vevvasdvleeve..ekkfd 99 ++ ++lD+++G+G l++ + ++ p+ e++++d ++ ++s + +e+nk + v+++ d+ + ve ++fd tr|Q54UI8|Q54UI8_DICDI 49 EKIRILDIAAGVGNLTIPASRQFPNSEIVATDYSKCMIDSLNLIIEQNKNNiknVKTLIVDGQNMVEieSESFD 122 4556**************************************99999988755655555565544432255555 PP >> sp|Q54EF2|ANM1_DICDI Protein arginine N-methyltransferase 1 OS=Dictyostelium discoideum OX=44689 GN=prmt1 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.6 0.1 2.6e-07 9.3e-05 32 103 .. 59 131 .. 48 132 .. 0.77 Alignments for each domain: == domain 1 score: 21.6 bits; conditional E-value: 2.6e-07 CSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC..EEEEE-STTTTST.TS-EEEEEE CS MTS 32 sgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle..vevvasdvleeve.ekkfdlivs 103 + vlD+GcG+G+l + +a++ + v vd++ + l +a++ ++an+++ +++++ + e v +k+d+i+s sp|Q54EF2|ANM1_DICDI 59 GKVVLDVGCGTGILCMFAAQAGAK-MVIGVDNSEM-LPIAQKIITANNFDktITLIKGKMEEVVLpVDKVDIIIS 131 4569**************999888.4777887765.9999**9****9998766666666655543578999986 PP >> sp|Q54WD6|TRM5_DICDI tRNA (guanine(37)-N1)-methyltransferase OS=Dictyostelium discoideum OX=44689 GN=trmt5 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.2 0.0 3.5e-07 0.00012 23 91 .. 207 272 .. 188 297 .. 0.73 2 ? -3.0 2.4 9.1 3.2e+03 55 101 .. 404 452 .. 395 455 .. 0.63 Alignments for each domain: == domain 1 score: 21.2 bits; conditional E-value: 3.5e-07 HHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGCEEEEE-STTT CS MTS 23 LletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleanklevevvasdvle 91 L++t++k ++ + D+ +G+G+ ++ +ak ++ +v + d + +++ ken+++n+le +v s++ + sp|Q54WD6|TRM5_DICDI 207 LVNTFKK--EDIICDMFAGVGPFALPAAKI-KKCKVYANDLNPSSVKYMKENAKTNRLESKVEISNLDA 272 5556655..55599************9995.5669************************6655555433 PP == domain 2 score: -3.0 bits; conditional E-value: 9.1 C.EEEEEESBHHHHHHHHHHHHHTTGC.EEEEE-STTTTST.TS-EEEE CS MTS 55 eaevtlvdvdarAlesakenleankle.vevvasdvleeve.ekkfdli 101 +++ + ++ es+++n +an++e + +++ +e+ + ++ d i sp|Q54WD6|TRM5_DICDI 404 STTTSTTSTSTTTTESTNTNNSANNVEdKNNKKRNSTEDSNeTNETDSI 452 4556677788888899999999999987444444444444313455555 PP >> tr|Q54QG2|Q54QG2_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB0185725 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.2 0.0 3.5e-07 0.00012 28 136 .. 198 302 .. 190 316 .. 0.80 Alignments for each domain: == domain 1 score: 21.2 bits; conditional E-value: 3.5e-07 HCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC..EEEEE-STTTTSTTS-EEEEEE---STTTCH CS MTS 28 pkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle..vevvasdvleeveekkfdlivsNPPfhagka 112 + ++++++l +GcG+G+l++++ k++ +vt + + + l+ +e +++++le +++ d + v ++fd i+s +a tr|Q54QG2|Q54QG2_DICDI 198 NLKKDHHLLEIGCGWGALAIEAVKRTGC-RVTGISLSQEQLKYGRERVKEEGLEdrIDLQYIDYRNVV--GQFDSIISC---EMLEA 278 4446788***************998876.8************************77777777765555..5******95...44455 PP CHHHHHHHHHHHHHHHEEEEEEEE CS MTS 113 telavaeeliaeAkeaLkegGeLl 136 + ++ ++ +++ ++ Lk++G L+ tr|Q54QG2|Q54QG2_DICDI 279 VGYENYKTYFQSVERLLKPNGVLV 302 666777788888888888888876 PP >> tr|Q54PP5|Q54PP5_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB_G0284401 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.0 0.0 4e-07 0.00014 31 90 .. 50 110 .. 34 125 .. 0.78 Alignments for each domain: == domain 1 score: 21.0 bits; conditional E-value: 4e-07 TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC.EEEEE-STT CS MTS 31 lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle.vevvasdvl 90 + ++lD+++G+G+l++ a+ +++ + +d + + +e+ + +++n+++ +e++ d+ tr|Q54PP5|Q54PP5_DICDI 50 KPMTILDVAAGTGPLSLYGAEVYKNSKFITTDFSPKMIEIVDRLVKDNNIKnIETHVMDGQ 110 3346**********************************************99666655543 PP >> tr|Q54NK9|Q54NK9_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB0218681 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.0 0.0 3.8e-07 0.00014 21 82 .. 76 142 .. 69 158 .. 0.80 Alignments for each domain: == domain 1 score: 21.0 bits; conditional E-value: 3.8e-07 HHHHHHCHCC....TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC...E CS MTS 21 klLletlpke....lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle...v 82 ++L +++ k+ +++k+l +G+G+Gv g+ lak + tl d++ l++ + n+e++ ++ + tr|Q54NK9|Q54NK9_DICDI 76 QVLTQYIIKNqeeyKNKKILEVGSGVGVCGLFLAKLGQP--CTLSDNNEVVLDLLRLNVEESTADgykC 142 556665555545569999*****************9988..89*****************998875444 PP >> tr|Q54C42|Q54C42_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB0191845 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.7 0.0 1.9e-06 0.00068 19 86 .. 411 481 .. 396 491 .. 0.80 Alignments for each domain: == domain 1 score: 18.7 bits; conditional E-value: 1.9e-06 HHHHHHHHCHCC....TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC.EEEEE CS MTS 19 GsklLletlpke....lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle.vevva 86 +++lL +++ + ++ ++lD++cG+G +g + k+ ++ v ++++ A+ + +n++ nk++ +e++ tr|Q54C42|Q54C42_DICDI 411 ATELLYSKVLDWaqvsQDTTLLDICCGTGTIGQCISKKVKK--VIGLEISPDAVIDSINNAKLNKIDnAEYLV 481 566666554333345567789****************9998..999******************999766655 PP >> tr|Q54GQ2|Q54GQ2_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB0188678 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.0 0.0 6.7e-06 0.0024 22 145 .. 37 158 .. 33 181 .. 0.74 Alignments for each domain: == domain 1 score: 17.0 bits; conditional E-value: 6.7e-06 HHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHH.HHHHH...HHHHHHTTGCEEEEE-STTT.TSTTS-EEEEEE CS MTS 22 lLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdar.Alesa...kenleanklevevvasdvle.eveekkfdlivs 103 +L e l +++ k++Dl+cG+G + ++ ++ + +v++v+ + + ++++ ke + +++ +++vv+ +++ +e+ fd+i tr|Q54GQ2|Q54GQ2_DICDI 37 MLKEDLGLTIDSKIMDLACGTGKFSKMICEADFK-NVVCVEPSPEfRVDCSyvlKEFIDDKNKDIQVVNGLATSlPFENSTFDCICA 122 4555566668999**************9998877.6889887753245544222788888888899998877763567899****** PP ---STTTCHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCH CS MTS 104 NPPfhagkatelavaeeliaeAkeaLkegGeLliVanrklgy 145 fh + + i+e ++Lk+gG L++++n+ + tr|Q54GQ2|Q54GQ2_DICDI 123 AQSFHWYDN------VDAIKEITRVLKPGGVLYLIWNNLSED 158 *****9998......455778899************986554 PP >> tr|Q55BF7|Q55BF7_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB0202856 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.4 0.0 4.8e-06 0.0017 27 102 .. 69 149 .. 56 151 .. 0.78 Alignments for each domain: == domain 1 score: 17.4 bits; conditional E-value: 4.8e-06 CHCC....TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHH.HHHHHHHHHTTGC...EEEEE-STTTTSTTS-EEEEE CS MTS 27 lpke....lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAl.esakenleankle...vevvasdvleeveekkfdliv 102 l + +++k++ lG+ +Gvl++ l k+ + vt d +a + e + n + n++e + ++ d ++e + k+f++++ tr|Q55BF7|Q55BF7_DICDI 69 LLLNqerfKNKKIIELGSATGVLSIFLNKKGYN--VTSSDYNADEItENINFNKSLNNIEfkhIPHTWGDTFKEED-KDFEIVI 149 433333668899*****************8887..99999999887356788999999997677778888888877.8888887 PP >> tr|Q86I59|Q86I59_DICDI Methyltransferase-like protein OS=Dictyostelium discoideum OX=44689 GN=DDB0167391 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.8 0.0 7.8e-06 0.0028 35 134 .. 100 206 .. 84 213 .. 0.66 Alignments for each domain: == domain 1 score: 16.8 bits; conditional E-value: 7.8e-06 EEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC......EEEEE-STTTT....STTS-EEEEEE---STTTC CS MTS 35 vlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle......vevvasdvlee....veekkfdlivsNPPfhagk 111 + +GcG+G ++ l++ +++++ + +d + +A+++ ++ +++n + a d+ + +e+++fdli+ + + tr|Q86I59|Q86I59_DICDI 100 AFEIGCGVGNTTIPLLELNDNLHFVSFDFSEHAVKLLNQSVSENPKIngrckgFVYNAIDGPSGlpdyIENDQFDLIII---IFVLS 183 5689**********************************99998843235533322222333222111145667777765...44444 PP HCHHHHHHHHHHHHHHHEEEEEE CS MTS 112 atelavaeeliaeAkeaLkegGe 134 a++ +++ ++ + Lk+gG+ tr|Q86I59|Q86I59_DICDI 184 AMDPKTIPSVVDMCYRTLKPGGK 206 55555555555555555555555 PP >> tr|Q55GB9|Q55GB9_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB0202134 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.2 0.0 2.4e-05 0.0084 31 73 .. 43 84 .. 32 91 .. 0.81 2 ? 0.1 0.1 1 3.5e+02 31 43 .. 84 96 .. 57 110 .. 0.70 3 ? -1.7 0.0 3.8 1.3e+03 120 140 .. 141 161 .. 137 178 .. 0.82 Alignments for each domain: == domain 1 score: 15.2 bits; conditional E-value: 2.4e-05 TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHH CS MTS 31 lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesake 73 + +++DlGcG+G ++ k+ ++ +v +d++++ ++ ake tr|Q55GB9|Q55GB9_DICDI 43 SETSIVDLGCGYGWFCREAIKMGSK-SVLGIDISKKMINKAKE 84 4567**************9998888.89999*99999998876 PP == domain 2 score: 0.1 bits; conditional E-value: 1 TCSEEEEET-TTS CS MTS 31 lsgkvlDlGcGaG 43 + ++ lDlG+G G tr|Q55GB9|Q55GB9_DICDI 84 ELDTTLDLGSGDG 96 3345899999988 PP == domain 3 score: -1.7 bits; conditional E-value: 3.8 HHHHHHHHHEEEEEEEEEEEE CS MTS 120 eliaeAkeaLkegGeLliVan 140 ++++ + Lk+gG+Ll+ ++ tr|Q55GB9|Q55GB9_DICDI 141 GFLRKVYSSLKKGGTLLFTVE 161 5778888999****9987655 PP >> tr|Q557I0|Q557I0_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB0168191 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.4 0.0 1e-05 0.0035 52 146 .. 248 355 .. 216 374 .. 0.77 Alignments for each domain: == domain 1 score: 16.4 bits; conditional E-value: 1e-05 HTTC.EEEEEESBHHHHHHHHHHHHHTTGC...EEEEE-STTTTST.....TS-EEEEEE---STTTCH.....CHHHHHHHHHHHH CS MTS 52 espeaevtlvdvdarAlesakenleankle...vevvasdvleeve.....ekkfdlivsNPPfhagka.....telavaeeliaeA 125 + +++ +d++ + ++a +n++ n+l+ ++ ++dv+ +++ +fd+iv PP +++ + t+++ ++l++ A tr|Q557I0|Q557I0_DICDI 248 NGHKIQTYNIDESIKNFKFADRNFKLNGLDtnyHKFSQKDVFTQLDylkskSTRFDVIVLDPPPRTKGNgfgifTSKDCYRDLLQLA 334 5567778889********************998888899998876433333689*********998664333447899999999999 PP HHHEEEEEEEEEEEETTSCHH CS MTS 126 keaLkegGeLliVanrklgye 146 L++gG + +n++ e tr|Q557I0|Q557I0_DICDI 335 IPLLNPGGFIASFVNTQSISE 355 999999999887777765555 PP >> sp|Q54XD0|COQ3_DICDI Ubiquinone biosynthesis O-methyltransferase, mitochondrial OS=Dictyostelium discoideum OX=44689 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.2 0.2 1.2e-05 0.0041 33 102 .. 129 208 .. 121 255 .. 0.68 Alignments for each domain: == domain 1 score: 16.2 bits; conditional E-value: 1.2e-05 SEEEEET-TTSHHHHHHHHHTTC.EEEEEESBH....HHHHHH......HHHHHHTTGC.EEEEE-STTTTSTTS-EEEEE CS MTS 33 gkvlDlGcGaGvlgaalakespeaevtlvdvda....rAlesa......kenleankle.vevvasdvleeveekkfdliv 102 +v+D+GcG+G+l+ +l + + +v+ +d+ + +A+ a +en++++ l+ +e + ++ ++ ++++fd++ sp|Q54XD0|COQ3_DICDI 129 LNVIDVGCGVGLLTESLSRLGAS-KVVGLDAAKnnilMAISHAsfdqklNENIQNKSLNyLESTIENFYNIENDQQFDAVC 208 57************999998777.666666654111256655422222234555555557777777777777788888776 PP >> tr|Q54LN7|Q54LN7_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB_G0286529 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.8 0.0 1.6e-05 0.0055 30 59 .. 54 83 .. 5 85 .] 0.85 Alignments for each domain: == domain 1 score: 15.8 bits; conditional E-value: 1.6e-05 CTCSEEEEET-TTSHHHHHHHHHTTC.EEE CS MTS 30 elsgkvlDlGcGaGvlgaalakespeaevt 59 e+ k+lD++cG+G+l++++ + +++++ tr|Q54LN7|Q54LN7_DICDI 54 EKPMKILDIACGTGPLTIVANEIFKKLQIY 83 25567**************99998888775 PP >> tr|Q54VU9|Q54VU9_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB0206392 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.5 0.1 1.9e-05 0.0069 24 95 .. 50 119 .. 44 135 .. 0.76 Alignments for each domain: == domain 1 score: 15.5 bits; conditional E-value: 1.9e-05 HHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGCEEEEE-STTTTSTT CS MTS 24 letlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleanklevevvasdvleevee 95 l+ +++ +k+l +GcG+ +l+ l +e+++++++++++d ++ + n +++k+ + v ++++ +ve+ tr|Q54VU9|Q54VU9_DICDI 50 LNLIKD--GDKILHVGCGNSFLAEDLVEETENIHIEIINIDVCENAINRMNERNKKITNQRVRNSLIYQVED 119 444444..678***********************99999888777777777777777766666666555553 PP >> tr|Q553T0|Q553T0_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB0202574 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.8 0.0 3e-05 0.011 32 135 .. 240 340 .. 225 342 .. 0.83 Alignments for each domain: == domain 1 score: 14.8 bits; conditional E-value: 3e-05 CSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC..EEEEE-STTTTST.TS-EEEEEE---STTTCHCHH CS MTS 32 sgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle..vevvasdvleeve.ekkfdlivsNPPfhagkatel 115 + vlD+GcG+G ++++ + + ++ ++++++ + +a++ +++ +++ +++ + d+++ ++ fd++ f + + tr|Q553T0|Q553T0_DICDI 240 DSLVLDVGCGVGGPTLEICQYTG-CKIRGLNINKKQVGIATQRAKDLGVSdrASFDHGDAMKMPYpDNTFDVVTF---FESTCH--M 320 4459**************99655.59***********************9999******9986543899999974...444444..5 PP HHHHHHHHHHHHHEEEEEEE CS MTS 116 avaeeliaeAkeaLkegGeL 135 +++i+e ++Lk+gG++ tr|Q553T0|Q553T0_DICDI 321 PDKQAFIKECYRVLKPGGRM 340 55799999999999999987 PP >> sp|Q54CP1|RRP8_DICDI Ribosomal RNA-processing protein 8 OS=Dictyostelium discoideum OX=44689 GN=rrp8 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.7 0.0 1.6e-05 0.0058 22 88 .. 218 287 .. 216 299 .. 0.77 2 ? -0.9 0.0 2.1 7.3e+02 120 137 .. 295 312 .. 286 342 .. 0.85 Alignments for each domain: == domain 1 score: 15.7 bits; conditional E-value: 1.6e-05 HHHHHCHCC.TCSEEEEET-TTSHHHHHHHHHTTC.E..EEEEESBHHHHHHHHHHHHHTTGCEEEEE-S CS MTS 22 lLletlpke.lsgkvlDlGcGaGvlgaalakespeae..vtlvdvdarAlesakenleanklevevvasd 88 l+++ l++ ++++++DlGcG l+ l++++ ++ +++v++ A ++++ l+++ +++ v+ + sp|Q54CP1|RRP8_DICDI 218 LIIDDLSSIkQRKRIADLGCGEAKLAERLQHKHTIQSfdLVAVNERVTACDISNLPLKNESIDIAVFCLS 287 56667776656778************99998887666337777777889999999999999998877655 PP == domain 2 score: -0.9 bits; conditional E-value: 2.1 HHHHHHHHHEEEEEEEEE CS MTS 120 eliaeAkeaLkegGeLli 137 ++i eA+++L +gG L i sp|Q54CP1|RRP8_DICDI 295 DFIIEAERVLVKGGLLKI 312 5889999***99998876 PP >> sp|Q86JJ0|TRM61_DICDI tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit trmt61a OS=Dictyostelium discoideu # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.4 0.0 4.1e-05 0.014 17 89 .. 89 162 .. 85 173 .. 0.83 Alignments for each domain: == domain 1 score: 14.4 bits; conditional E-value: 4.1e-05 -HHHHHHHHHCHCCTCSEEEEET-TTSHHHHHHHHH.TTC.EEEEEESBHHHHHHHHHHHHHTTGC..EEEEE-ST CS MTS 17 DkGsklLletlpkelsgkvlDlGcGaGvlgaalake.speaevtlvdvdarAlesakenleankle..vevvasdv 89 D+ + ++ l++ +++ G+G G l+ ++a+ p+ ++ ++ + + +++a++ +++n+l+ ++v+++d+ sp|Q86JJ0|TRM61_DICDI 89 DISTIIFNLELKN--GSRAVESGTGSGSLSSSIARTiAPKGHLFTFEFHEERVKFARKDFKDNGLDqyITVTHRDA 162 5555555445555..7789*************9986368999************************8888888886 PP >> sp|Q9GPS6|PIMT_DICDI Probable protein-L-isoaspartate O-methyltransferase OS=Dictyostelium discoideum OX=44689 GN=pcm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.7 0.0 6.9e-05 0.024 22 102 .. 117 201 .. 111 239 .. 0.76 Alignments for each domain: == domain 1 score: 13.7 bits; conditional E-value: 6.9e-05 HHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.E.EEEEESBHHHHHHHHHHHHHTTGC....EEEEE-STTTTSTTS-EEEEE CS MTS 22 lLletlpkelsgkvlDlGcGaGvlgaalakespeae.vtlvdvdarAlesakenleankle....vevvasdvleeveekkfdliv 102 lL++ +p +g +lD+G+G G+++a l + + v v+ + +e + e +++ + ++++ d+++ +++ k+d+i sp|Q9GPS6|PIMT_DICDI 117 LLADRIPM-SNGVALDIGSGSGYVTACLGHLMGCTGrVIGVEHIPELIERSIESIKRLDSTlldrIQFLVGDGIKGWKQLKYDIIY 201 55555665.8889**************999877654466666655555555444444333333379************99**9995 PP >> sp|Q551M3|TRMB_DICDI tRNA (guanine-N(7)-)-methyltransferase OS=Dictyostelium discoideum OX=44689 GN=mettl1 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.1 0.0 5.3e-05 0.019 27 75 .. 52 99 .. 45 136 .. 0.76 Alignments for each domain: == domain 1 score: 14.1 bits; conditional E-value: 5.3e-05 CHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHH CS MTS 27 lpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenl 75 +++ ++ +++D+GcG+G l ++l + pe + ++ + ++ +e + sp|Q551M3|TRMB_DICDI 52 MNE-KKVEIADVGCGYGGLLISLSSLFPERLSVGMELRDKVVQYVEERI 99 444.6678****************9999977666666666666665555 PP >> sp|Q54QK7|DIM1_DICDI Probable dimethyladenosine transferase OS=Dictyostelium discoideum OX=44689 GN=dimt1 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.6 0.0 7.1e-05 0.025 31 112 .. 55 135 .. 41 162 .. 0.76 Alignments for each domain: == domain 1 score: 13.6 bits; conditional E-value: 7.1e-05 TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESB.HHHHHHHHHHHHHTTGC.EEEEE-STTTTSTTS-EEEEEE---STTTCH CS MTS 31 lsgkvlDlGcGaGvlgaalakespeaevtlvdvd.arAlesakenleankle.vevvasdvleeveekkfdlivsNPPfhagka 112 +++vl +G G+G l+++l++++++ v +++vd +A e+ k+ +++ ++ ++++ d l+ fd+ v N P++ ++ sp|Q54QK7|DIM1_DICDI 55 STDTVLEIGPGTGNLTMKLLENCKK--VIAIEVDpRMAAELQKRVAASPYAQhLQIILGDFLKVDL-PYFDVCVANVPYQISSP 135 5678*****************9999..566666624577777777777777789******998665.79*******99987664 PP >> sp|Q54JW0|NDUF5_DICDI Arginine-hydroxylase NDUFAF5, mitochondrial OS=Dictyostelium discoideum OX=44689 GN=ndufaf5 PE # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.8 0.2 0.00013 0.046 31 105 .. 78 165 .. 59 191 .. 0.76 Alignments for each domain: == domain 1 score: 12.8 bits; conditional E-value: 0.00013 TCSEEEEET-TTSHHHHHHHHHTTC.E.EEEEESBHHHH.....HHHHHHHHHTTGC....EEEEE...-STTTTSTTS-EEEEEE-- CS MTS 31 lsgkvlDlGcGaGvlgaalakespeae.vtlvdvdarAl.....esakenleankle....vevva...sdvleeveekkfdlivsNP 105 + g+vlD+G+ +G+l ++++ +++ +v+ +++ l ++++en +n+ + ++++ +d +e +e++++dli+sN sp|Q54JW0|NDUF5_DICDI 78 KCGNVLDFGSRNGALFKYIQEKGAKIDkYYMVESSKELLyrddnNVSQENEDDNNNNkvkpTKILVnslEDKIEGIEDQSLDLIISNL 165 6789********************9988*******998833333455666555544466685555511157778888**********5 PP >> sp|Q54B59|OMT12_DICDI O-methyltransferase 12 OS=Dictyostelium discoideum OX=44689 GN=omt12 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.7 0.0 0.00058 0.2 12 137 .. 150 274 .. 143 290 .. 0.70 Alignments for each domain: == domain 1 score: 10.7 bits; conditional E-value: 0.00058 TTTS--HHHHHHHHHCHCC.....TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGCEEEEE-STTTTST CS MTS 12 skdklDkGsklLletlpke.....lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleanklevevvasdvleeve 94 +++ D+ s l+++ l ++ ++v+D+G G+l +l++ +p+++ +d + s+ +n + ++ +++ v d ++ v+ sp|Q54B59|OMT12_DICDI 150 HNAMKDYTS-LIIDRLISKislspNFKTVVDIGGSHGFLIGKLLESNPNIHGINFDLENIINSSTSKNENFQHPRLKHVSGDFFNSVP 236 555555544.334444333355566778*********************6655555554444455555555555599999*****999 PP TS-EEEEEE---STTTCHCHHHHHHHHHHHHHHHEEEEEEEEE CS MTS 95 ekkfdlivsNPPfhagkatelavaeeliaeAkeaLkegGeLli 137 + d+ + +h+ ++ + +++++ ++ Lk++G+L+i sp|Q54B59|OMT12_DICDI 237 --EADCYILKYILHDWSD---EKCITILNNIHKSLKPNGKLFI 274 ..6666666666676666...5556677777777888888775 PP >> sp|Q55DH6|NTM1_DICDI Alpha N-terminal protein methyltransferase 1 OS=Dictyostelium discoideum OX=44689 GN=DDB_G02696 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.1 0.0 0.00044 0.16 34 103 .. 109 179 .. 81 237 .. 0.73 Alignments for each domain: == domain 1 score: 11.1 bits; conditional E-value: 0.00044 EEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGCEEEEE-STTTTST.TS-EEEEEE CS MTS 34 kvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleanklevevvasdvleeve.ekkfdlivs 103 +lD G+G+G ++ +++ +v+lv++++ l+ ak + + +ve + +l++++ ekk+d+i sp|Q55DH6|NTM1_DICDI 109 LALDCGAGIGRVAKEFLLPIGFKNVDLVEQNKLFLDKAKSDNFKDDNRVENYYAVGLQDFTfEKKYDCIWI 179 389*******************9*************99976555555555555555555544999999965 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (169 nodes) Target sequences: 12739 (6856946 residues searched) Passed MSV filter: 616 (0.0483554); expected 254.8 (0.02) Passed bias filter: 299 (0.0234712); expected 254.8 (0.02) Passed Vit filter: 61 (0.00478844); expected 12.7 (0.001) Passed Fwd filter: 36 (0.00282597); expected 0.1 (1e-05) Initial search space (Z): 12739 [actual number of targets] Domain search space (domZ): 36 [number of targets reported over threshold] # CPU time: 0.16u 0.01s 00:00:00.17 Elapsed: 00:00:00.06 # Mc/sec: 19313.73 // [ok]