# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/MTS.hmm.txt # target sequence database: proteomes/Pseudomonas_aeruginosa.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: MTS [M=169] Accession: PF05175.13 Description: Methyltransferase small domain Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-55 183.8 0.0 2.2e-54 181.9 0.0 1.8 2 sp|Q9HVG4|RSMC_PSEAE Ribosomal RNA small subunit methyltra 5.8e-54 180.5 0.0 3.2e-51 171.6 0.0 2.2 2 sp|Q9HVH4|RLMG_PSEAE Ribosomal RNA large subunit methyltra 2.3e-19 67.9 0.0 3.2e-16 57.7 0.0 2.1 2 sp|Q9I347|PRMB_PSEAE 50S ribosomal protein L3 glutamine me 1.1e-16 59.2 0.0 2.6e-16 58.0 0.0 1.5 1 tr|Q9I1T6|Q9I1T6_PSEAE Uncharacterized protein OS=Pseudomona 3.2e-16 57.7 0.0 2.9e-15 54.6 0.0 1.9 2 sp|Q9HVC8|PRMC_PSEAE Release factor glutamine methyltransf 7.7e-12 43.4 0.0 1.2e-11 42.8 0.0 1.2 1 tr|Q9HY94|Q9HY94_PSEAE Uncharacterized protein OS=Pseudomona 7.3e-11 40.3 0.0 1.1e-10 39.7 0.0 1.2 1 sp|Q9HUW3|PRMA_PSEAE Ribosomal protein L11 methyltransfera 9.6e-10 36.6 0.0 1.9e-09 35.7 0.0 1.4 1 tr|Q9I6D9|Q9I6D9_PSEAE Uncharacterized protein OS=Pseudomona 8.9e-07 27.0 0.0 1.2e-06 26.5 0.0 1.3 1 sp|Q9HZ63|UBIG_PSEAE Ubiquinone biosynthesis O-methyltrans 2.6e-06 25.5 0.0 1e-05 23.5 0.0 1.8 2 tr|Q9I2I3|Q9I2I3_PSEAE Uncharacterized protein OS=Pseudomona 5e-06 24.5 0.0 0.0013 16.7 0.0 2.5 2 sp|Q9HZG0|RLMKL_PSEAE Ribosomal RNA large subunit methyltra 5.3e-06 24.4 0.0 9.7e-06 23.6 0.0 1.4 1 tr|Q9HT28|Q9HT28_PSEAE Uncharacterized protein OS=Pseudomona 7.1e-06 24.0 0.0 1e-05 23.5 0.0 1.3 1 tr|Q9HV18|Q9HV18_PSEAE tRNA 5-carboxymethoxyuridine methyltr 1.6e-05 22.9 0.0 4.2e-05 21.5 0.0 1.8 1 tr|Q9I4P1|Q9I4P1_PSEAE Uncharacterized protein OS=Pseudomona 1.6e-05 22.8 0.0 2.3e-05 22.4 0.0 1.1 1 tr|Q9I6C4|Q9I6C4_PSEAE Ribosomal RNA small subunit methyltra 1.9e-05 22.7 0.0 3.3e-05 21.9 0.0 1.4 1 sp|Q9I7A9|RSMB_PSEAE Ribosomal RNA small subunit methyltra 2.2e-05 22.4 0.0 3.8e-05 21.7 0.0 1.3 1 sp|Q9I525|RLMD_PSEAE 23S rRNA (uracil(1939)-C(5))-methyltr 3.6e-05 21.7 0.0 7.3e-05 20.7 0.0 1.4 1 sp|Q9HXG4|RLMF_PSEAE Ribosomal RNA large subunit methyltra 9.7e-05 20.3 0.0 0.0013 16.7 0.0 2.1 2 tr|Q9I615|Q9I615_PSEAE Malonyl-[acyl-carrier protein] O-meth 0.00017 19.6 0.0 0.00025 19.0 0.0 1.2 1 sp|Q9HT10|RSMG_PSEAE Ribosomal RNA small subunit methyltra 0.00019 19.4 0.0 0.0003 18.7 0.0 1.2 1 sp|Q9I0S1|TAM_PSEAE Trans-aconitate 2-methyltransferase O 0.00022 19.1 0.0 0.00039 18.3 0.0 1.4 1 tr|Q9I4H6|Q9I4H6_PSEAE rRNA methyltransferase OS=Pseudomonas 0.00024 19.0 0.0 0.00038 18.4 0.0 1.3 1 tr|Q9I227|Q9I227_PSEAE Uncharacterized protein OS=Pseudomona 0.0003 18.7 0.0 0.00064 17.7 0.0 1.5 1 tr|Q9I5Y9|Q9I5Y9_PSEAE Probable transcriptional regulator OS 0.00032 18.6 0.0 0.00047 18.1 0.0 1.2 1 sp|Q9X6R0|SPEE1_PSEAE Polyamine aminopropyltransferase 1 OS 0.0012 16.8 0.1 0.0019 16.1 0.1 1.3 1 sp|Q9HV78|TRMA_PSEAE tRNA/tmRNA (uracil-C(5))-methyltransf 0.0013 16.7 0.1 0.002 16.1 0.1 1.2 1 tr|Q9I0F9|Q9I0F9_PSEAE Uncharacterized protein OS=Pseudomona 0.0017 16.3 0.0 0.0025 15.7 0.0 1.2 1 tr|Q9HTB3|Q9HTB3_PSEAE Uncharacterized protein OS=Pseudomona 0.006 14.5 0.0 0.0088 13.9 0.0 1.3 1 sp|Q9HWH2|PHZM_PSEAE Phenazine-1-carboxylate N-methyltrans 0.0082 14.1 0.5 0.091 10.6 0.2 2.2 2 tr|Q9I3H6|Q9I3H6_PSEAE Probable short-chain dehydrogenase OS 0.0091 13.9 0.0 0.014 13.3 0.0 1.2 1 tr|Q9HTB1|Q9HTB1_PSEAE Uncharacterized protein OS=Pseudomona 0.0093 13.9 0.0 0.023 12.6 0.0 1.6 2 tr|Q9HWW9|Q9HWW9_PSEAE Uncharacterized protein OS=Pseudomona ------ inclusion threshold ------ 0.011 13.6 0.0 0.017 13.0 0.0 1.3 1 tr|Q9I6A6|Q9I6A6_PSEAE Uncharacterized protein OS=Pseudomona 0.018 13.0 0.0 0.024 12.6 0.0 1.2 1 tr|Q9HV06|Q9HV06_PSEAE Uncharacterized protein OS=Pseudomona 0.021 12.7 0.0 0.027 12.4 0.0 1.2 1 tr|Q9I281|Q9I281_PSEAE Uncharacterized protein OS=Pseudomona 0.026 12.4 0.0 0.037 11.9 0.0 1.2 1 tr|Q9I3T7|Q9I3T7_PSEAE Uncharacterized protein OS=Pseudomona 0.03 12.2 0.0 0.047 11.6 0.0 1.3 1 tr|Q9I4C2|Q9I4C2_PSEAE Uncharacterized protein OS=Pseudomona 0.04 11.8 0.1 0.15 9.9 0.1 1.9 1 tr|Q9I5X8|Q9I5X8_PSEAE Uncharacterized protein OS=Pseudomona 0.043 11.7 0.0 0.097 10.6 0.0 1.5 1 sp|Q9I5G4|CMOB_PSEAE tRNA U34 carboxymethyltransferase OS= 0.044 11.7 0.0 0.074 10.9 0.0 1.3 1 tr|Q9I001|Q9I001_PSEAE Uncharacterized protein OS=Pseudomona 0.055 11.4 0.0 0.08 10.8 0.0 1.3 1 tr|Q9HUX4|Q9HUX4_PSEAE Uncharacterized protein OS=Pseudomona 0.063 11.2 0.0 0.19 9.6 0.0 1.8 2 sp|Q9HZU0|COBL_PSEAE Precorrin-6Y C(5,15)-methyltransferas Domain annotation for each sequence (and alignments): >> sp|Q9HVG4|RSMC_PSEAE Ribosomal RNA small subunit methyltransferase C OS=Pseudomonas aeruginosa (strain ATCC 15692 / # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.7 0.0 2.1 2.8e+02 131 148 .. 94 111 .. 78 123 .. 0.75 2 ! 181.9 0.0 1.7e-56 2.2e-54 1 168 [. 161 327 .. 161 328 .. 0.99 Alignments for each domain: == domain 1 score: -0.7 bits; conditional E-value: 2.1 EEEEEEEEEETTSCHHHH CS MTS 131 egGeLliVanrklgyesl 148 +gGeL++V ++ g+e++ sp|Q9HVG4|RSMC_PSEAE 94 PGGELFLVGEKRGGIERA 111 799***999998887766 PP == domain 2 score: 181.9 bits; conditional E-value: 1.7e-56 CEEEEEETTSTTTTS--HHHHHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGCEEEEE-ST CS MTS 1 eltlktlpgvFskdklDkGsklLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleanklevevvasdv 89 el++++lpgvFs+++lD Gs+lLl +l++ g++lD+GcGaGvlga+l++++p ++ l+dvda A+es++ +l+an+l++ev+a d+ sp|Q9HVG4|RSMC_PSEAE 161 ELQVVSLPGVFSHGRLDRGSALLLGQLQALPGGHLLDFGCGAGVLGAVLKRRYPASRLSLLDVDAFAVESSRLTLAANGLDGEVIAADG 249 5899************************************************************************************* PP TTTSTTS-EEEEEE---STTTCHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS--EEEEEESSEEEE CS MTS 90 leeveekkfdlivsNPPfhagkatelavaeeliaeAkeaLkegGeLliVanrklgyeslleelfgnvevvaktkkfkvl 168 ++ ++ +++ +ivsNPPfh+g +t++++ e+l++ A+e+L++gGeL++Van++l+y++l+e+++g ++++a+ ++f+++ sp|Q9HVG4|RSMC_PSEAE 250 IDGAP-RELAAIVSNPPFHQGVHTDYQASERLLQRAAEHLAPGGELRLVANSFLKYPPLIERHLGPCRTLAEGDGFRIY 327 *****.************************************************************************9 PP >> sp|Q9HVH4|RLMG_PSEAE Ribosomal RNA large subunit methyltransferase G OS=Pseudomonas aeruginosa (strain ATCC 15692 / # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.9 0.0 0.01 1.3 16 102 .. 27 113 .. 24 118 .. 0.78 2 ! 171.6 0.0 2.4e-53 3.2e-51 2 169 .] 201 371 .. 200 371 .. 0.97 Alignments for each domain: == domain 1 score: 6.9 bits; conditional E-value: 0.01 --HHHHHHHHHCHCC...TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC.EEEEE-STTTTSTTS-EEE CS MTS 16 lDkGsklLletlpke...lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle.vevvasdvleeveekkfdl 100 +D++ + Ll++l+++ ++ +vl l +G+l+a+la p+++vt ++ + ++nl++n+l+ ++v+ + e++ + fd+ sp|Q9HVH4|RLMG_PSEAE 27 FDAADEYLLNQLHERgvtAQCRVLVLNDAFGALAASLA---PHVQVTSSGDSHLGFLALRKNLARNGLDlGSVRFVPASETAV-GPFDH 111 78888999999999887766778888888888887765...79999***********************65555555555544.77777 PP EE CS MTS 101 iv 102 ++ sp|Q9HVH4|RLMG_PSEAE 112 VL 113 76 PP == domain 2 score: 171.6 bits; conditional E-value: 2.4e-53 EEEEEETTSTTTTS--HHHHHHHHHCHCC.TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC..EEEEE- CS MTS 2 ltlktlpgvFskdklDkGsklLletlpke.lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle..vevvas 87 ltl+++++vF++++lD+G++ +l +lp + + +++DlGcG+Gvlg+a a +p+ae+ lvd++++A++sa+en++a e ++++a sp|Q9HVH4|RLMG_PSEAE 201 LTLLNHANVFCREGLDIGTRAFLPHLPRSlGALRAADLGCGNGVLGIAYALLNPQAELALVDESYMAVQSARENWRAALGErpATFRAD 289 6899************************975668********************************************99999****** PP STTTTSTTS-EEEEEE---STTTCHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS--EEEEEESSEEEEE CS MTS 88 dvleeveekkfdlivsNPPfhagkatelavaeeliaeAkeaLkegGeLliVanrklgyeslleelfgnvevvaktkkfkvlk 169 d+l+ + +++dl+++NPPfh+++ + + +a++++ +A++aL+ gGeL+iV nr+lgy+++l++lf+ ve+va + kf++lk sp|Q9HVH4|RLMG_PSEAE 290 DGLAGQAAGSLDLVLCNPPFHQQQVVGDFLAWRMFLQARDALAAGGELWIVGNRHLGYHAKLKRLFRGVEQVAANPKFVILK 371 ********************************************************************************96 PP >> sp|Q9I347|PRMB_PSEAE 50S ribosomal protein L3 glutamine methyltransferase OS=Pseudomonas aeruginosa (strain ATCC 156 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 57.7 0.0 2.4e-18 3.2e-16 27 112 .. 122 208 .. 115 218 .. 0.90 2 ! 8.2 0.0 0.004 0.53 115 145 .. 231 262 .. 225 272 .. 0.82 Alignments for each domain: == domain 1 score: 57.7 bits; conditional E-value: 2.4e-18 CHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC..EEEEE-STTTTSTTS-EEEEEE---STTTCH CS MTS 27 lpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle..vevvasdvleeveekkfdlivsNPPfhagka 112 lp+e + ++lDl++G G +g+a+a + ++aev+l d ++ Ale+a+ n+e+++l v +v+ d+++ ++ ++fdlivsNPP+ + ++ sp|Q9I347|PRMB_PSEAE 122 LPAEPA-RILDLCTGSGCIGIACAYAFEQAEVVLADLSFDALEVANVNIERHDLGerVYTVQGDGFAGLPGQRFDLIVSNPPYVDAED 208 666444.6*********************************************99889999*********************988776 PP == domain 2 score: 8.2 bits; conditional E-value: 0.004 HHHHHHHHHHHHHHEEEEEEEEE.EEETTSCH CS MTS 115 lavaeeliaeAkeaLkegGeLli.Vanrklgy 145 l+++++++aeA+++L+e+G L++ V n+++++ sp|Q9I347|PRMB_PSEAE 231 LDLVRRMLAEAADHLSEKGLLIVeVGNSEVHV 262 57899**************9987677776665 PP >> tr|Q9I1T6|Q9I1T6_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 58.0 0.0 1.9e-18 2.6e-16 29 137 .. 131 252 .. 121 256 .. 0.81 Alignments for each domain: == domain 1 score: 58.0 bits; conditional E-value: 1.9e-18 CC...TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC.EEEEE-STTTTSTTS-EEEEEE---S.... CS MTS 29 ke...lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle.vevvasdvleeveekkfdlivsNPPf.... 107 ++ + ++++D+GcGaG+ ++ +a ++p+aev+ +d++ +Al++a+ n++ ++ +++ sd+l++++ ++fdliv NPP+ tr|Q9I1T6|Q9I1T6_PSEAE 131 SSdpaRIRRAADIGCGAGPGAIRIAMACPDAEVHGLDINPAALDLARVNAALAGVGnLTLARSDLLSQAP-GRFDLIVANPPYllda 216 4444455679*******************************************9998*************.***********84444 PP ......TTTCHCHHHHHHHHHHHHHHHEEEEEEEEE CS MTS 108 ......hagkatelavaeeliaeAkeaLkegGeLli 137 h g + +++ +A e+L+ gG+Ll+ tr|Q9I1T6|Q9I1T6_PSEAE 217 serayrHGGGMLGAGLSLAIVDAALERLEAGGSLLL 252 443333344444556777888888888888888875 PP >> sp|Q9HVC8|PRMC_PSEAE Release factor glutamine methyltransferase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 54.6 0.0 2.2e-17 2.9e-15 20 107 .. 94 185 .. 92 195 .. 0.89 2 ? 0.7 0.0 0.76 1e+02 118 137 .. 216 235 .. 208 248 .. 0.87 Alignments for each domain: == domain 1 score: 54.6 bits; conditional E-value: 2.2e-17 HHHHHHHCHCC...TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC.EEEEE-STTTTSTTS-EEEEEE- CS MTS 20 sklLletlpke...lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle.vevvasdvleeveekkfdlivsN 104 ++lL+et ++ + +vlDlG+G+G++++ala+e p +vt+vd +A+++a++n ++ le vev+ s +++++ ++f +iv N sp|Q9HVC8|PRMC_PSEAE 94 TELLVETALATlaaDTATVLDLGTGTGAIALALASERPLWTVTAVDRVEEAVALAERNRQRLLLEnVEVRRSHWFSALDGRRFRMIVGN 182 567766544443446667*********************************************************************** PP --S CS MTS 105 PPf 107 PP+ sp|Q9HVC8|PRMC_PSEAE 183 PPY 185 **7 PP == domain 2 score: 0.7 bits; conditional E-value: 0.76 HHHHHHHHHHHEEEEEEEEE CS MTS 118 aeeliaeAkeaLkegGeLli 137 +++++a+A+++L ++G Ll+ sp|Q9HVC8|PRMC_PSEAE 216 IRQIVAQAPRHLLDEGWLLL 235 5799************9875 PP >> tr|Q9HY94|Q9HY94_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 42.8 0.0 8.8e-14 1.2e-11 31 139 .. 176 280 .. 167 302 .. 0.82 Alignments for each domain: == domain 1 score: 42.8 bits; conditional E-value: 8.8e-14 TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC..EEEEE-STTTTSTTS-EEEEEE---STTTCHCHH CS MTS 31 lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle..vevvasdvleeveekkfdlivsNPPfhagkatel 115 + g+vlD+GcG G+ ++++ak+ pea+v +d +a ++e a++n+ea ++ v++ sd + + kkfd++ + +h+ ++ tr|Q9HY94|Q9HY94_PSEAE 176 AGGSVLDFGCGSGLAAIMMAKAFPEAQVYGCDFHAPSIERARANAEAAGVGdrVRFEVSDSDALAG-KKFDFVTTFVVIHDATD--- 258 5789*********************************************98888888888777777.99****99888888888... PP HHHHHHHHHHHHHEEEEEEEEEEE CS MTS 116 avaeeliaeAkeaLkegGeLliVa 139 ++++++ +e +++G+ l+V tr|Q9HY94|Q9HY94_PSEAE 259 --PQQMMKDLRESTADDGTYLMVE 280 ..6777777777777777777774 PP >> sp|Q9HUW3|PRMA_PSEAE Ribosomal protein L11 methyltransferase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 2264 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 39.7 0.0 8.3e-13 1.1e-10 18 104 .. 142 229 .. 126 230 .. 0.89 Alignments for each domain: == domain 1 score: 39.7 bits; conditional E-value: 8.3e-13 HHHHHHHHHCHCC..TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGCEEEEE-STTTTSTTS-EEEEEE- CS MTS 18 kGsklLletlpke..lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleanklevevvasdvleeveekkfdlivsN 104 ++l le l+ + + ++vlD+GcG G+l++a++ e + + +d+d +Ale+++ n+++n++e + + +++++++ d++v N sp|Q9HUW3|PRMA_PSEAE 142 PTTALCLEWLDGQelAGRQVLDFGCGSGILAIAALLLGAE-RAVGTDIDPQALEASRDNASRNGIEPARFPVYLPADLPQRQADVLVAN 229 6789999999998888999**************9998888.6889*********************88888999999999999999998 PP >> tr|Q9I6D9|Q9I6D9_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 35.7 0.0 1.4e-11 1.9e-09 31 137 .. 220 336 .. 212 362 .. 0.82 Alignments for each domain: == domain 1 score: 35.7 bits; conditional E-value: 1.4e-11 TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC..EEEEE-STTTTST.....TS-EEEEEE---..ST CS MTS 31 lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle..vevvasdvleeve.....ekkfdlivsNPP..fh 108 + ++vlDl + +G g+++a++ + ev +vd++a Al+ ++n++ n+++ v +v+ dv+e++ +++fd+++ PP ++ tr|Q9I6D9|Q9I6D9_PSEAE 220 QGKRVLDLFSYIGGWGIQAAAFGAS-EVMCVDASAFALDGVERNAALNGVAekVACVEGDVFEALRelkaaDERFDVVIADPPafIK 305 4578***************998887.9***********************99999******9986533344799*********5433 PP TTC..HCHHHHHHHHHHHHHHHEEEEEEEEE CS MTS 109 agk..atelavaeeliaeAkeaLkegGeLli 137 ++k + +a+ ++l ++A + L+++G L+ tr|Q9I6D9|Q9I6D9_PSEAE 306 RKKdlKNGEAAYRRLNEQAMRLLSKDGILVS 336 33322556788999*************9874 PP >> sp|Q9HZ63|UBIG_PSEAE Ubiquinone biosynthesis O-methyltransferase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.5 0.0 9.4e-09 1.2e-06 31 103 .. 47 119 .. 35 156 .. 0.87 Alignments for each domain: == domain 1 score: 26.5 bits; conditional E-value: 9.4e-09 TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC...EEEEE-STTTTSTTS-EEEEEE CS MTS 31 lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle...vevvasdvleeveekkfdlivs 103 + +kvlD+GcG G+l+ a+a++ + vt +d + l++a+ +++++ +++a+++ ee++ ++fd++ + sp|Q9HZ63|UBIG_PSEAE 47 AGKKVLDIGCGGGILSEAMAQRGAS--VTGIDMGEAPLAVARLHQLESGVAvdyRQITAEQMAEEMP-GQFDVVTC 119 5689*****************9887..9999999999999999999999886677788888888888.9***9965 PP >> tr|Q9I2I3|Q9I2I3_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.5 0.0 7.5e-08 1e-05 32 91 .. 45 104 .. 30 112 .. 0.86 2 ? -1.0 0.0 2.6 3.5e+02 120 136 .. 142 158 .. 136 175 .. 0.85 Alignments for each domain: == domain 1 score: 23.5 bits; conditional E-value: 7.5e-08 CSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGCEEEEE-STTT CS MTS 32 sgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleanklevevvasdvle 91 + +++D +cG G lg l+++ p a+v+++d+d + le+a++ l+ + +v+vv++d+++ tr|Q9I2I3|Q9I2I3_PSEAE 45 RFTAIDAACGPGSLGRRLLERFPAARVVALDADVMLLEIARTALAGFAERVRVVECDLTD 104 3459*****************************************99999******9987 PP == domain 2 score: -1.0 bits; conditional E-value: 2.6 HHHHHHHHHEEEEEEEE CS MTS 120 eliaeAkeaLkegGeLl 136 + a+A e L++gG Ll tr|Q9I2I3|Q9I2I3_PSEAE 142 GFYAQAGELLAPGGVLL 158 57899*********986 PP >> sp|Q9HZG0|RLMKL_PSEAE Ribosomal RNA large subunit methyltransferase K/L OS=Pseudomonas aeruginosa (strain ATCC 15692 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.1 0.0 0.035 4.7 58 111 .. 265 323 .. 254 341 .. 0.76 2 ! 16.7 0.0 9.7e-06 0.0013 47 137 .. 579 679 .. 552 701 .. 0.77 Alignments for each domain: == domain 1 score: 5.1 bits; conditional E-value: 0.035 EEEEESBHHHHHHHHHHHHHTTGC..EEEEE-STTT...TSTTS-EEEEEE---STTTC CS MTS 58 vtlvdvdarAlesakenleankle..vevvasdvle...eveekkfdlivsNPPfhagk 111 + +++d r ++ a +n+e+ +++ v++++ ++ ++++ l+++NPP+ + sp|Q9HZG0|RLMKL_PSEAE 265 IRGYEADPRLIQPACNNIERAGVAdwVKIYQGELATfepRPDKGQTGLVICNPPYGERL 323 6677888888888999999999888888888887542113347899********97765 PP == domain 2 score: 16.7 bits; conditional E-value: 9.7e-06 HHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC..EEEEE-STTTTST..TS-EEEEEE---STTTCHCHHHHHH......HHHHH CS MTS 47 aalakespeaevtlvdvdarAlesakenleankle..vevvasdvleeve..ekkfdlivsNPPfhagkatelavae......eliae 124 ++ a++ + t vd ++ l+ a++nl+ n+++ ++v+ dv+e + +++++li PP ++++ + v + el+ sp|Q9HZG0|RLMKL_PSEAE 579 TVHAARGGARSTTSVDLSKTYLDWARRNLSLNGFSdkQRLVHGDVMEWLRedDGQYELIFIDPPTFSNSKRMEGVFDvqrdhvELLDL 666 3445555666899*********************999**********98755789*********766665554443211222389999 PP HHHHEEEEEEEEE CS MTS 125 AkeaLkegGeLli 137 A ++L++gG L++ sp|Q9HZG0|RLMKL_PSEAE 667 AMARLAPGGVLYF 679 9999999999986 PP >> tr|Q9HT28|Q9HT28_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.6 0.0 7.3e-08 9.7e-06 12 103 .. 134 232 .. 126 255 .. 0.80 Alignments for each domain: == domain 1 score: 23.6 bits; conditional E-value: 7.3e-08 TTTS--HHHHHH..HHHCHCC....TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC..EEEEE-STT CS MTS 12 skdklDkGsklL..letlpke....lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle..vevvasdvl 90 ++k D +++ L l++l + +k+lD+GcG+G l+ +a+e evt + +++ l++ +e ++a++le v++ d tr|Q9HT28|Q9HT28_PSEAE 134 ETGKEDLATAQLakLRHLCRKlrlqPGEKLLDVGCGWGGLARLAAREFGV-EVTGITLSKEQLALGRERVKAEGLEdrVTLKLLDYR 219 55556666655522234444444448999***********9888877665.9************************88888999999 PP TTSTTS-EEEEEE CS MTS 91 eeveekkfdlivs 103 + +++fd +vs tr|Q9HT28|Q9HT28_PSEAE 220 DLPRDGRFDKVVS 232 9999*****9997 PP >> tr|Q9HV18|Q9HV18_PSEAE tRNA 5-carboxymethoxyuridine methyltransferase OS=Pseudomonas aeruginosa (strain ATCC 15692 / # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.5 0.0 7.7e-08 1e-05 23 103 .. 34 113 .. 30 165 .. 0.88 Alignments for each domain: == domain 1 score: 23.5 bits; conditional E-value: 7.7e-08 HHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC...EEEEE-STTTTSTTS-EEEEEE CS MTS 23 LletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle...vevvasdvleeveekkfdlivs 103 L+e+lp++ +vlD+G+G G ++++la++ + vtl + l+ a++ +++ + + +++ ++++l +++ + +dl+++ tr|Q9HV18|Q9HV18_PSEAE 34 LAEALPERPL-RVLDIGAGLGHMSLWLAARGHR--VTLAEPAQPMLDGARQRFAEAGQAaefIQAPWQELLGQLT-EPYDLVLC 113 7889999655.6*****************9888..9***************99988777678899999******9.9****998 PP >> tr|Q9I4P1|Q9I4P1_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.5 0.0 3.2e-07 4.2e-05 31 86 .. 67 122 .. 59 208 .. 0.78 Alignments for each domain: == domain 1 score: 21.5 bits; conditional E-value: 3.2e-07 TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGCEEEEE CS MTS 31 lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleanklevevva 86 ++++vlD+GcG+G g la+e p+a+ +d +a+ +e a +++ + e +++ tr|Q9I4P1|Q9I4P1_PSEAE 67 MARRVLDIGCGIGRWGWLLAEEAPQADYLGIDFSAALVEKACDEARQRGYERLLFQ 122 5689********************************99999999998888744433 PP >> tr|Q9I6C4|Q9I6C4_PSEAE Ribosomal RNA small subunit methyltransferase D OS=Pseudomonas aeruginosa (strain ATCC 15692 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.4 0.0 1.7e-07 2.3e-05 31 112 .. 58 142 .. 42 153 .. 0.83 Alignments for each domain: == domain 1 score: 22.4 bits; conditional E-value: 1.7e-07 TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC.EEEEE-STTT...TSTTS-EEEEEE---STTTCH CS MTS 31 lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle.vevvasdvle...eveekkfdlivsNPPfhagka 112 + +vlD +G G+l ++++++ + e ++d + +A+++ ++ l a k+ +++v d++ + ++ fdl+ PPfh++ tr|Q9I6C4|Q9I6C4_PSEAE 58 EGARVLDPFAGSGALFLEALSRGAR-EGLALDTNGEAVAALRNHLDALKCGtAQLVLGDAVRylgNQAPSAFDLVFLDPPFHQNLL 142 5678****************99988.67789*****************99999999999876222445689***********9874 PP >> sp|Q9I7A9|RSMB_PSEAE Ribosomal RNA small subunit methyltransferase B OS=Pseudomonas aeruginosa (strain ATCC 15692 / # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.9 0.0 2.5e-07 3.3e-05 17 92 .. 229 305 .. 213 333 .. 0.89 Alignments for each domain: == domain 1 score: 21.9 bits; conditional E-value: 2.5e-07 -HHHHHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.E.EEEEESBHHHHHHHHHHHHHTTGCEEEEE-STTTT CS MTS 17 DkGsklLletlpkelsgkvlDlGcGaGvlgaalakespeae.vtlvdvdarAlesakenleanklevevvasdvlee 92 D +++l +e+l+++ ++vlD +c G +++l++ +pe++ v++vd + l +enl++ +l++++va d+ ++ sp|Q9I7A9|RSMB_PSEAE 229 DEAAQLAAEQLESAPGQRVLDACCAPGGKTCHLLETQPELAeVVAVDLEESRLVRVRENLQRLGLQASLVAADARAT 305 99*************************************988*****************************998776 PP >> sp|Q9I525|RLMD_PSEAE 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD OS=Pseudomonas aeruginosa (strain ATCC 1569 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.7 0.0 2.9e-07 3.8e-05 27 106 .. 300 383 .. 280 396 .. 0.85 Alignments for each domain: == domain 1 score: 21.7 bits; conditional E-value: 2.9e-07 CHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC.EEEEE-STTTTST.....TS-EEEEEE--- CS MTS 27 lpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle.vevvasdvleeve.....ekkfdlivsNPP 106 l +++++vlDl cG G ++ la++ + v+ v+ a+ +e a +n+ an+l +++++ d+ ++++ e+ f +++ PP sp|Q9I525|RLMD_PSEAE 300 LAPTADERVLDLFCGLGNFSLPLARRVAR--VVGVEGVAAMVERAGANALANGLGnAHFFQADLSKALAeapwaEQGFTAVLLDPP 383 55667889*****************9988..9**********************99*******98876511122566777777777 PP >> sp|Q9HXG4|RLMF_PSEAE Ribosomal RNA large subunit methyltransferase F OS=Pseudomonas aeruginosa (strain ATCC 15692 / # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.7 0.0 5.5e-07 7.3e-05 34 113 .. 120 208 .. 112 215 .. 0.78 Alignments for each domain: == domain 1 score: 20.7 bits; conditional E-value: 5.5e-07 EEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC...EEEEE-....STTTTST..TS-EEEEEE---STTTCHC CS MTS 34 kvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle...vevvas....dvleeve..ekkfdlivsNPPfhagkat 113 ++lD+G+Ga + l +++ + + d+d ++l+sa + l+an +e++ + ++++ + +++fd+ ++NPPfha+ ++ sp|Q9HXG4|RLMF_PSEAE 120 RALDVGTGANCIYPLLGHHEYGWRFVGADIDPQSLASAAAILAANPRFaaaIELRRQpdrrQIFQGLIgvDERFDMTLCNPPFHASLDE 208 689*************************************9999964435555544311114555543446*************99875 PP >> tr|Q9I615|Q9I615_PSEAE Malonyl-[acyl-carrier protein] O-methyltransferase OS=Pseudomonas aeruginosa (strain ATCC 156 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.7 0.0 9.7e-06 0.0013 22 72 .. 47 98 .. 39 107 .. 0.86 2 ? 1.1 0.0 0.6 80 121 136 .. 139 154 .. 134 157 .. 0.88 Alignments for each domain: == domain 1 score: 16.7 bits; conditional E-value: 9.7e-06 HHHHHCHCC.TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHH CS MTS 22 lLletlpke.lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesak 72 Ll++lp+ ++ +DlGcG+G+ + al ++ ae +vd+ l+ a+ tr|Q9I615|Q9I615_PSEAE 47 SLLSALPEGfSPRRWVDLGCGTGYFSRALERRFGAAEGLAVDIAEGMLRHAR 98 58999999976678*******************9999999998877776666 PP == domain 2 score: 1.1 bits; conditional E-value: 0.6 HHHHHHHHEEEEEEEE CS MTS 121 liaeAkeaLkegGeLl 136 ++aeA+++L++gG L tr|Q9I615|Q9I615_PSEAE 139 VLAEARRVLRPGGVLA 154 789**********996 PP >> sp|Q9HT10|RSMG_PSEAE Ribosomal RNA small subunit methyltransferase G OS=Pseudomonas aeruginosa (strain ATCC 15692 / # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.0 0.0 1.9e-06 0.00025 23 103 .. 61 146 .. 54 147 .. 0.80 Alignments for each domain: == domain 1 score: 19.0 bits; conditional E-value: 1.9e-06 HHHHCHCC....TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHH.HHHHTTGCEEEEE-STTTTSTTS-EEEEEE CS MTS 23 Lletlpke....lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesake.nleanklevevvasdvleeveekkfdlivs 103 Ll+ l+ + ++ lD+G+G G+ g+ la pe ++tl+d + + ++ ++ le + +++evv+s v + +e fd ivs sp|Q9HT10|RSMG_PSEAE 61 LLDSLSIVpyaeAGDNWLDVGSGGGMPGVPLAILFPEKRLTLLDSNGKKTRFLTQvKLELKLANLEVVHSRVEAFRPESPFDGIVS 146 55555444444467789*****************************999987665155555555********99999999**9997 PP >> sp|Q9I0S1|TAM_PSEAE Trans-aconitate 2-methyltransferase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / C # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.7 0.0 2.3e-06 0.0003 23 71 .. 35 83 .. 33 99 .. 0.87 Alignments for each domain: == domain 1 score: 18.7 bits; conditional E-value: 2.3e-06 HHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHH CS MTS 23 LletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesa 71 Ll++++ +++ DlGcG+G+ + la+++p ae+ vd + + le a sp|Q9I0S1|TAM_PSEAE 35 LLDHIEPCCPERIYDLGCGTGIATELLARRWPLAELYGVDSSVEMLEEA 83 778888888889******************************9988765 PP >> tr|Q9I4H6|Q9I4H6_PSEAE rRNA methyltransferase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.3 0.0 3e-06 0.00039 29 73 .. 79 123 .. 69 144 .. 0.85 Alignments for each domain: == domain 1 score: 18.3 bits; conditional E-value: 3e-06 CCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHH CS MTS 29 kelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesake 73 +++ ++ lD+GcG G+ +a l ++ ae ++d++ +A++ a + tr|Q9I4H6|Q9I4H6_PSEAE 79 ERAPRRWLDIGCGEGYYSARLGEALAGAEGYALDISREAVKRACR 123 3466789*********************************98754 PP >> tr|Q9I227|Q9I227_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.4 0.0 2.9e-06 0.00038 33 101 .. 38 108 .. 19 145 .. 0.85 Alignments for each domain: == domain 1 score: 18.4 bits; conditional E-value: 2.9e-06 SEEEEET-TTSHHHHHHHHHTTC.E.EEEEESBHHHHHHHHHHHHHTTGCEEEEE-STTTTST.TS-EEEE CS MTS 33 gkvlDlGcGaGvlgaalakespeae.vtlvdvdarAlesakenleanklevevvasdvleeve.ekkfdli 101 +++lDlGcG+G l + a+++p ++ + ++ + le a++ l+ ++e+++++ d+l+ + ++f+li tr|Q9I227|Q9I227_PSEAE 38 RSLLDLGCGIGSLLLGGARRWPGLQrLWGIERSPLRLEQARAQLRGAGVEARLLEGDLLDLPPlAERFELI 108 569********************999*******************************99866555777776 PP >> tr|Q9I5Y9|Q9I5Y9_PSEAE Probable transcriptional regulator OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.7 0.0 4.8e-06 0.00064 23 136 .. 157 263 .. 153 273 .. 0.85 Alignments for each domain: == domain 1 score: 17.7 bits; conditional E-value: 4.8e-06 HHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC.EEEEE-STTTTSTTS-EEEEEE---ST CS MTS 23 LletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle.vevvasdvleeveekkfdlivsNPPfh 108 Ll++l + ++l +G G G +la++ + vt++d++a+ le+a++ +++++l v++ d+l++++ + d++v N +h tr|Q9I5Y9|Q9I5Y9_PSEAE 157 LLDALAFAPGATALEVGPGDGGFLPELARRFRQ--VTALDNSAAMLELARQRCKEEGLGnVRLELADALQDAA-EPADCVVLNMVLH 240 788888888999***********9*****9999..9*********************999*************.9********9888 PP TTCHCHHHHHHHHHHHHHHHEEEEEEEE CS MTS 109 agkatelavaeeliaeAkeaLkegGeLl 136 + a e +++ ++ ++gG+Ll tr|Q9I5Y9|Q9I5Y9_PSEAE 241 HFAA-----PAEALKQLARLVHPGGSLL 263 8776.....3333444555666666665 PP >> sp|Q9X6R0|SPEE1_PSEAE Polyamine aminopropyltransferase 1 OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.1 0.0 3.6e-06 0.00047 27 136 .. 70 186 .. 42 203 .. 0.82 Alignments for each domain: == domain 1 score: 18.1 bits; conditional E-value: 3.6e-06 CHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC......EEEEE-STTTTST..TS-EEEEEE-.. CS MTS 27 lpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle......vevvasdvleeve..ekkfdlivsN.. 104 l + ++++vl +G G G + ++ak+++ ++t+v++d ++++ke l ++ +++v d++ v+ e++fd+i+s sp|Q9X6R0|SPEE1_PSEAE 70 LAHGAARRVLIIGGGDGGMLREVAKHKSVERITMVEIDGTVVDMCKEFLPNHSQGafddprLNLVIDDGMRFVAttEERFDVIISDst 157 34447889********************99****************9887665444568999999999986544338*******8733 PP --STTTCHCHHHHHHHHHHHHHHHEEEEEEEE CS MTS 105 PPfhagkatelavaeeliaeAkeaLkegGeLl 136 P+ g+ e++ ++ +++L+egG L+ sp|Q9X6R0|SPEE1_PSEAE 158 DPIGPGEV---LFSENFYQACRRCLNEGGILV 186 59988887...78999999999*****99875 PP >> sp|Q9HV78|TRMA_PSEAE tRNA/tmRNA (uracil-C(5))-methyltransferase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.1 0.1 1.5e-05 0.0019 31 88 .. 207 266 .. 191 275 .. 0.82 Alignments for each domain: == domain 1 score: 16.1 bits; conditional E-value: 1.5e-05 TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC....EEEEE-S CS MTS 31 lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle....vevvasd 88 +++++l l cG+G ++ la + + v ++++++ ++++a +nl++n+++ v++ a++ sp|Q9HV78|TRMA_PSEAE 207 RDDDLLELYCGNGNFTLPLATRVRK--VLATEISKSSVNAALANLADNAVDnvslVRLSAEE 266 5667999**************9998..9**********************984444444444 PP >> tr|Q9I0F9|Q9I0F9_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.1 0.1 1.5e-05 0.002 32 73 .. 38 77 .. 24 102 .. 0.79 Alignments for each domain: == domain 1 score: 16.1 bits; conditional E-value: 1.5e-05 CSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHH CS MTS 32 sgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesake 73 ++ +lD GcG+G l++ la++ ++ v+ +d++a+ ++ a++ tr|Q9I0F9|Q9I0F9_PSEAE 38 TRLALDCGCGTGQLTVLLAERFER--VVGTDASAAQIDKAQA 77 4558****************9999..9999999999998876 PP >> tr|Q9HTB3|Q9HTB3_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.7 0.0 1.9e-05 0.0025 31 77 .. 51 95 .. 40 111 .. 0.80 Alignments for each domain: == domain 1 score: 15.7 bits; conditional E-value: 1.9e-05 TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHH CS MTS 31 lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenlea 77 +++++lDlGcG Gv ++ +a++ + v ++d + ++s + +ea tr|Q9HTB3|Q9HTB3_PSEAE 51 AQDTLLDLGCGEGVATLFAARQGAS--VIFTDSEEDKVRSLAQQVEA 95 56789*********99999997766..88889888888888777765 PP >> sp|Q9HWH2|PHZM_PSEAE Phenazine-1-carboxylate N-methyltransferase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.9 0.0 6.7e-05 0.0088 30 96 .. 163 232 .. 135 279 .. 0.82 Alignments for each domain: == domain 1 score: 13.9 bits; conditional E-value: 6.7e-05 C...TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC..EEEEE-STTTTSTTS CS MTS 30 e...lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle..vevvasdvleeveek 96 + ++ +D+G G G l+ a+++++p+a+ +++d + +l +a+ nl++ + v++v d+l+ev+ sp|Q9HWH2|PHZM_PSEAE 163 LldfRGRSFVDVGGGSGELTKAILQAEPSARGVMLDRE-GSLGVARDNLSSLLAGerVSLVGGDMLQEVP-S 232 344466789***************************86.689******9987766679999999999988.4 PP >> tr|Q9I3H6|Q9I3H6_PSEAE Probable short-chain dehydrogenase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.6 0.2 0.00069 0.091 37 92 .. 13 67 .. 1 76 [. 0.73 2 ? 1.5 0.0 0.46 61 18 47 .. 120 149 .. 116 209 .. 0.87 Alignments for each domain: == domain 1 score: 10.6 bits; conditional E-value: 0.00069 EET-TTS.HHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGCEEEEE-STTTT CS MTS 37 DlGcGaG.vlgaalakespeaevtlvdvdarAlesakenleanklevevvasdvlee 92 G+G+G +l+++l ++ ++ l dv+a+Ale +++ l++++++v++ dv + tr|Q9I3H6|Q9I3H6_PSEAE 13 GAGSGIGrALAVELGRQG--CHLALADVNAAALEETRQLLASSGVRVSTAVVDVADR 67 335555533555555544..4599**********************99999998765 PP == domain 2 score: 1.5 bits; conditional E-value: 0.46 HHHHHHHHHCHCCTCSEEEEET-TTSHHHH CS MTS 18 kGsklLletlpkelsgkvlDlGcGaGvlga 47 +G+k +l +l+++ +g+v+ + + +G+ + tr|Q9I3H6|Q9I3H6_PSEAE 120 NGTKAFLPHLKASGNGHVVNVSSVFGLFAQ 149 69***********9999*999998888765 PP >> tr|Q9HTB1|Q9HTB1_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.3 0.0 0.0001 0.014 23 89 .. 51 116 .. 43 131 .. 0.83 Alignments for each domain: == domain 1 score: 13.3 bits; conditional E-value: 0.0001 HHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC.EEEEE-ST CS MTS 23 LletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle.vevvasdv 89 L + +p +++++vlD+GcG G +a + + + + d+da+ ++ ++e l+++ ++ +e++ sd+ tr|Q9HTB1|Q9HTB1_PSEAE 51 LFSGFPISAEDTVLDVGCGDGGNVHFCAMRGAR--IIIADIDAEKIARTRERLADTPAReLECLVSDC 116 556667778899*********888888877666..8999************99998887788888887 PP >> tr|Q9HWW9|Q9HWW9_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.9 0.0 4.9 6.5e+02 86 107 .. 37 58 .. 24 59 .. 0.82 2 ! 12.6 0.0 0.00017 0.023 25 52 .. 71 102 .. 64 109 .. 0.77 Alignments for each domain: == domain 1 score: -1.9 bits; conditional E-value: 4.9 E-STTTTSTTS-EEEEEE---S CS MTS 86 asdvleeveekkfdlivsNPPf 107 a+++ ++++++ i+ PP+ tr|Q9HWW9|Q9HWW9_PSEAE 37 AQNMDRQFSPEETRRILEEPPY 58 6788888888999999999995 PP == domain 2 score: 12.6 bits; conditional E-value: 0.00017 HHCHCC....TCSEEEEET-TTSHHHHHHHHH CS MTS 25 etlpke....lsgkvlDlGcGaGvlgaalake 52 + l ++ ++++vlD+G+G Gv ++a+a++ tr|Q9HWW9|Q9HWW9_PSEAE 71 RWLAARpqwvRDKRVLDFGSGSGVAAIAAARA 102 55555555567889************999986 PP >> tr|Q9I6A6|Q9I6A6_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.0 0.0 0.00013 0.017 32 103 .. 15 82 .. 5 107 .. 0.64 Alignments for each domain: == domain 1 score: 13.0 bits; conditional E-value: 0.00013 CSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC.EEEEE-STTTTSTTS-EEEEEE CS MTS 32 sgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle.vevvasdvleeveekkfdlivs 103 +vlDlGcG G l a+l ++ ++++ +++d ++ + en +++ +e +l +++ ++fd++v+ tr|Q9I6A6|Q9I6A6_PSEAE 15 GSRVLDLGCGDGELLAWLRDH-KQVSGYGLEIDPDNIARCIEN----GVNvIEQDLDKGLGNFASDSFDVVVM 82 668***********9999875.455666677777766655443....32223333344444555566666665 PP >> tr|Q9HV06|Q9HV06_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.6 0.0 0.00018 0.024 23 100 .. 32 109 .. 26 146 .. 0.82 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 0.00018 HHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGCEEEEE-STT.TTSTTS-EEE CS MTS 23 LletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleanklevevvasdvl.eeveekkfdl 100 L++ + + ++ ++D+G Ga l l++e ++t++d + +Al++a++ l a + ev+ +a d++ +++e+ +d+ tr|Q9HV06|Q9HV06_PSEAE 32 LIRRIGAPREAAIIDVGGGASTLVDGLLAEGFG-DLTVLDLSDAALRVARNRLGARGEEVRWIAGDITgVDLPEATYDV 109 566666778889**********99888887666.7**************************999998733566666665 PP >> tr|Q9I281|Q9I281_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.4 0.0 0.0002 0.027 23 89 .. 34 100 .. 29 147 .. 0.86 Alignments for each domain: == domain 1 score: 12.4 bits; conditional E-value: 0.0002 HHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC..EEEEE-ST CS MTS 23 LletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle..vevvasdv 89 Ll lp+ + ++l +GcGaG a+la p + ++ d +a l++a++ +++ +l +e++ dv tr|Q9I281|Q9I281_PSEAE 34 LLARLPE--RARLLSVGCGAGGELAELAGLRPGWRFVAADLSADMLALARQRCARLGLLerIELHCGDV 100 7778888..5569*************************************9998877655677766666 PP >> tr|Q9I3T7|Q9I3T7_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.9 0.0 0.00028 0.037 68 143 .. 183 266 .. 149 283 .. 0.72 Alignments for each domain: == domain 1 score: 11.9 bits; conditional E-value: 0.00028 HHHHHHHHHHTTGC...EEEEE-STTTTSTT....S-EEEEEE---.STTTCHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTS CS MTS 68 lesakenleankle...vevvasdvleevee....kkfdlivsNPP.fhagkatelavaeeliaeAkeaLkegGeLliVanrkl 143 l+ + n + n+++ v+++ +++++ + + + +dl++ PP f++g+ + ++ +++++ +e L +gG+Ll +n tr|Q9I3T7|Q9I3T7_PSEAE 183 LNRGRDNHRLNGHDlgrVSFLGHELFKSWGKlrklGPYDLVIVDPPsFQKGSFVLTQDYRRILRRLPELLVPGGTLLACINDPA 266 55555555555555555555555555554421111579********8999999999********************99888654 PP >> tr|Q9I4C2|Q9I4C2_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.6 0.0 0.00036 0.047 25 75 .. 26 76 .. 22 102 .. 0.69 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 0.00036 HHCHCC..TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHH CS MTS 25 etlpke..lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenl 75 ++l ++ +++ +lD+GcG+Gv ++ l+ v+ d + ++ a+en+ tr|Q9I4C2|Q9I4C2_PSEAE 26 RNLAERapAREAALDIGCGNGVSTVRLQPWFRY--VEGSDLGEALIAKARENY 76 5566665567779********988777654444..666666666666666665 PP >> tr|Q9I5X8|Q9I5X8_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.9 0.1 0.0012 0.15 26 140 .. 37 140 .. 28 157 .. 0.59 Alignments for each domain: == domain 1 score: 9.9 bits; conditional E-value: 0.0012 HCHCCTCSEEEEET-TTSHHHHHHHHHTTC.E.EEEEESBHHHHHHHHHHHHHTTGCEEEEE-STTTTSTTS-EEEEEE---STTTC CS MTS 26 tlpkelsgkvlDlGcGaGvlgaalakespeae.vtlvdvdarAlesakenleanklevevvasdvleeveekkfdlivsNPPfhagk 111 +l + + ++DlG+G+G + la+ ++ v+ vd+ ++a++ + ++l++++ + ++ d++v+ fh tr|Q9I5X8|Q9I5X8_PSEAE 37 ALGLRPQTVAVDLGAGTGKFTRLLARTGARVVaVEPVDAMR--AQLAEALPQVQALAGSAQSIPLA----NGFADALVCAQAFHWFA 117 5555567779***************9988843344444333..33333333333333333333333....33336666666666544 PP HCHHHHHHHHHHHHHHHEEEEEEEEEEEE CS MTS 112 atelavaeeliaeAkeaLkegGeLliVan 140 e ++e +++L+ +G+L +V+n tr|Q9I5X8|Q9I5X8_PSEAE 118 T------VEALEEMRRVLTAEGRLGLVWN 140 4......3445555666666666666665 PP >> sp|Q9I5G4|CMOB_PSEAE tRNA U34 carboxymethyltransferase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CI # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.6 0.0 0.00073 0.097 31 64 .. 121 153 .. 114 159 .. 0.77 Alignments for each domain: == domain 1 score: 10.6 bits; conditional E-value: 0.00073 TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESB CS MTS 31 lsgkvlDlGcGaGvlgaalakespeaevtlvdvd 64 + ++vlD+GcG+G+ ++ + e +v+ vd + sp|Q9I5G4|CMOB_PSEAE 121 RGKRVLDVGCGNGYYQWRMLGAGAE-SVVGVDPN 153 5678**********98888877666.56666666 PP >> tr|Q9I001|Q9I001_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.9 0.0 0.00056 0.074 15 137 .. 49 172 .. 37 182 .. 0.86 Alignments for each domain: == domain 1 score: 10.9 bits; conditional E-value: 0.00056 S--HHHHHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC.EEEEE-STTTTSTT.S-EE CS MTS 15 klDkGsklLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle.vevvasdvleevee.kkfd 99 + D+ ++Ll l +++ +++l lG GaG l+ a++++ p e ++++ + ++a+e l + ++++ d+le + e ++ d tr|Q9I001|Q9I001_PSEAE 49 EYDYTRAMLLGGLCHSQPRRALFLGFGAGSLTQACLRHLPLEEAEAIELRPAIPRLAREHLGLRDDPrLRLRIGDALESLGEcAEAD 135 67889999999999999999*****************************9999999*99998766556**********998537899 PP EEEE---STTTCHCHHHHHHHHHHHHHHHEEEEEEEEE CS MTS 100 livsNPPfhagkatelavaeeliaeAkeaLkegGeLli 137 li +g ++a++++ + +e+L+e+G L+i tr|Q9I001|Q9I001_PSEAE 136 LIFLDLYTDTGPS-AAHLAWNFLGACQERLAEDGWLVI 172 9999865555555.89999*************996654 PP >> tr|Q9HUX4|Q9HUX4_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.8 0.0 0.00061 0.08 31 87 .. 119 175 .. 104 223 .. 0.86 Alignments for each domain: == domain 1 score: 10.8 bits; conditional E-value: 0.00061 TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGCEEEEE- CS MTS 31 lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleanklevevvas 87 ++ +vl +G+Ga + +a +++++ a++ ++d+d +Al +a+e ++ ++le+++ s tr|Q9HUX4|Q9HUX4_PSEAE 119 ADARVLFVGSGALPTSALVLAREVGAHLCCLDIDEEALGCAREIARCQGLEARMQFS 175 4567999999*9999**99999999*******************9999999776555 PP >> sp|Q9HZU0|COBL_PSEAE Precorrin-6Y C(5,15)-methyltransferase [decarboxylating] OS=Pseudomonas aeruginosa (strain ATCC # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.6 0.0 0.0015 0.19 35 80 .. 258 303 .. 238 320 .. 0.79 2 ? -2.2 0.0 6.3 8.3e+02 120 137 .. 336 353 .. 332 366 .. 0.68 Alignments for each domain: == domain 1 score: 9.6 bits; conditional E-value: 0.0015 EEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTG CS MTS 35 vlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankl 80 + D+G+G G +g++ +++p+ + +++++ + e ++n a ++ sp|Q9HZU0|COBL_PSEAE 258 LWDVGAGCGSIGIEWMRAHPSCRAIAIEANDERQEHIRHNRDALGV 303 67*******************9988888887777777777666555 PP == domain 2 score: -2.2 bits; conditional E-value: 6.3 HHHHHHHHHEEEEEEEEE CS MTS 120 eliaeAkeaLkegGeLli 137 ++++ e+L++gG+Ll sp|Q9HZU0|COBL_PSEAE 336 GVLETCWERLRPGGRLLA 353 566677778888888864 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (169 nodes) Target sequences: 5563 (1857172 residues searched) Passed MSV filter: 213 (0.0382887); expected 111.3 (0.02) Passed bias filter: 197 (0.0354125); expected 111.3 (0.02) Passed Vit filter: 58 (0.010426); expected 5.6 (0.001) Passed Fwd filter: 42 (0.00754988); expected 0.1 (1e-05) Initial search space (Z): 5563 [actual number of targets] Domain search space (domZ): 42 [number of targets reported over threshold] # CPU time: 0.07u 0.01s 00:00:00.08 Elapsed: 00:00:00.03 # Mc/sec: 10462.07 // [ok]