# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/MafB19-deam.hmm.txt
# target sequence database: proteomes/Branchiostoma_floridae.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MafB19-deam [M=138]
Accession: PF14437.5
Description: MafB19-like deaminase
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
9.1e-12 45.6 0.1 1.2e-11 45.1 0.1 1.1 1 tr|C3YZ91|C3YZ91_BRAFL Uncharacterized protein OS=Branchiost
------ inclusion threshold ------
0.05 14.0 0.2 0.077 13.4 0.2 1.2 1 tr|C3Y0M9|C3Y0M9_BRAFL Uncharacterized protein OS=Branchiost
0.082 13.3 0.5 3.3 8.1 0.0 2.3 2 tr|C3YJI1|C3YJI1_BRAFL Ferredoxin OS=Branchiostoma floridae
1.3 9.4 3.8 13 6.2 1.9 2.1 2 tr|C3XRV2|C3XRV2_BRAFL Uncharacterized protein (Fragment) OS
Domain annotation for each sequence (and alignments):
>> tr|C3YZ91|C3YZ91_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_82934 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 45.1 0.1 1.7e-15 1.2e-11 24 104 .. 53 149 .. 46 173 .. 0.84
Alignments for each domain:
== domain 1 score: 45.1 bits; conditional E-value: 1.7e-15
MafB19-deam 24 kiga.vivkdkkviargsn...................ekelnakataHaEiaalqqAakklkskrlddatlyvtlepCdmCagaiv 90
++ga ++ +kk++++g+n + +++ HaE +a+ k+++ +++t+yv l pC+ Ca++++
tr|C3YZ91|C3YZ91_BRAFL 53 QVGAcIVNSEKKIVGIGYNgmpngcsddklpwsrtaenRLDTKYPYVCHAELNAILN---KNSAD-VKGCTMYVALFPCNECAKLVI 135
4555266699************************99776666777889******964...45554.89******************* PP
MafB19-deam 91 qaglkklvygagnp 104
q+g++++v+ +++
tr|C3YZ91|C3YZ91_BRAFL 136 QSGIREIVFMSDKY 149
********998854 PP
>> tr|C3Y0M9|C3Y0M9_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_126857 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 13.4 0.2 1.1e-05 0.077 4 55 .. 191 243 .. 188 254 .. 0.82
Alignments for each domain:
== domain 1 score: 13.4 bits; conditional E-value: 1.1e-05
MafB19-deam 4 ekafrkalaevekatkikedkigaviv..kdkkviargsnekelnakataHaEi 55
+k+++ al+ +++a + + +++gav+v ++vi++g+ + +++ Ha +
tr|C3Y0M9|C3Y0M9_BRAFL 191 QKYMQRALQAAQHAKQTGMEPVGAVVVdpVADEVIGVGHDLRH-AGNPLHHAVM 243
89**********************99954579*******9554.5667777754 PP
>> tr|C3YJI1|C3YJI1_BRAFL Ferredoxin OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_126939 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 8.1 0.0 0.00046 3.3 81 135 .. 118 182 .. 115 184 .. 0.80
2 ? 3.0 0.1 0.017 1.2e+02 81 95 .. 231 245 .. 228 265 .. 0.89
Alignments for each domain:
== domain 1 score: 8.1 bits; conditional E-value: 0.00046
MafB19-deam 81 pCdmCagaivqaglkklvygagnpks.......lnkLkvkekngrvelv....eddckeilkgffk 135
C+ Cag iv + + + + + + + L+v+ k ++ l e+ + +i +++fk
tr|C3YJI1|C3YJI1_BRAFL 118 ACSTCAGKIVSGTVDQSDQSFLDDDQiaagkfsIMHLFVQSKK-NYGLLgitgEETIRNIKERVFK 182
6*************99998888787788999888888776554.4445558899999999999987 PP
== domain 2 score: 3.0 bits; conditional E-value: 0.017
MafB19-deam 81 pCdmCagaivqaglk 95
C Cag iv + +
tr|C3YJI1|C3YJI1_BRAFL 231 ACTTCAGKIVSGTVD 245
6*********99876 PP
>> tr|C3XRV2|C3XRV2_BRAFL Uncharacterized protein (Fragment) OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_227149 PE=
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 3.7 0.0 0.011 76 78 96 .. 14 32 .. 1 42 [. 0.82
2 ? 6.2 1.9 0.0018 13 68 86 .. 46 64 .. 39 75 .. 0.76
Alignments for each domain:
== domain 1 score: 3.7 bits; conditional E-value: 0.011
MafB19-deam 78 tlepCdmCagaivqaglkk 96
++++C+ C g +++lk+
tr|C3XRV2|C3XRV2_BRAFL 14 GVDTCEGCKGFFRRSQLKT 32
6799******999999997 PP
== domain 2 score: 6.2 bits; conditional E-value: 0.0018
MafB19-deam 68 krlddatlyvtlepCdmCa 86
k +d a+ +vt+++C +C
tr|C3XRV2|C3XRV2_BRAFL 46 KSKDCAINVVTRNLCRYCR 64
334556679*********4 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (138 nodes)
Target sequences: 28542 (13248087 residues searched)
Passed MSV filter: 763 (0.0267325); expected 570.8 (0.02)
Passed bias filter: 524 (0.0183589); expected 570.8 (0.02)
Passed Vit filter: 35 (0.00122626); expected 28.5 (0.001)
Passed Fwd filter: 4 (0.000140144); expected 0.3 (1e-05)
Initial search space (Z): 28542 [actual number of targets]
Domain search space (domZ): 4 [number of targets reported over threshold]
# CPU time: 0.16u 0.01s 00:00:00.17 Elapsed: 00:00:00.09
# Mc/sec: 20313.73
//
[ok]