# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/MafB19-deam.hmm.txt # target sequence database: proteomes/Branchiostoma_floridae.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: MafB19-deam [M=138] Accession: PF14437.5 Description: MafB19-like deaminase Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.1e-12 45.6 0.1 1.2e-11 45.1 0.1 1.1 1 tr|C3YZ91|C3YZ91_BRAFL Uncharacterized protein OS=Branchiost ------ inclusion threshold ------ 0.05 14.0 0.2 0.077 13.4 0.2 1.2 1 tr|C3Y0M9|C3Y0M9_BRAFL Uncharacterized protein OS=Branchiost 0.082 13.3 0.5 3.3 8.1 0.0 2.3 2 tr|C3YJI1|C3YJI1_BRAFL Ferredoxin OS=Branchiostoma floridae 1.3 9.4 3.8 13 6.2 1.9 2.1 2 tr|C3XRV2|C3XRV2_BRAFL Uncharacterized protein (Fragment) OS Domain annotation for each sequence (and alignments): >> tr|C3YZ91|C3YZ91_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_82934 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 45.1 0.1 1.7e-15 1.2e-11 24 104 .. 53 149 .. 46 173 .. 0.84 Alignments for each domain: == domain 1 score: 45.1 bits; conditional E-value: 1.7e-15 MafB19-deam 24 kiga.vivkdkkviargsn...................ekelnakataHaEiaalqqAakklkskrlddatlyvtlepCdmCagaiv 90 ++ga ++ +kk++++g+n + +++ HaE +a+ k+++ +++t+yv l pC+ Ca++++ tr|C3YZ91|C3YZ91_BRAFL 53 QVGAcIVNSEKKIVGIGYNgmpngcsddklpwsrtaenRLDTKYPYVCHAELNAILN---KNSAD-VKGCTMYVALFPCNECAKLVI 135 4555266699************************99776666777889******964...45554.89******************* PP MafB19-deam 91 qaglkklvygagnp 104 q+g++++v+ +++ tr|C3YZ91|C3YZ91_BRAFL 136 QSGIREIVFMSDKY 149 ********998854 PP >> tr|C3Y0M9|C3Y0M9_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_126857 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.4 0.2 1.1e-05 0.077 4 55 .. 191 243 .. 188 254 .. 0.82 Alignments for each domain: == domain 1 score: 13.4 bits; conditional E-value: 1.1e-05 MafB19-deam 4 ekafrkalaevekatkikedkigaviv..kdkkviargsnekelnakataHaEi 55 +k+++ al+ +++a + + +++gav+v ++vi++g+ + +++ Ha + tr|C3Y0M9|C3Y0M9_BRAFL 191 QKYMQRALQAAQHAKQTGMEPVGAVVVdpVADEVIGVGHDLRH-AGNPLHHAVM 243 89**********************99954579*******9554.5667777754 PP >> tr|C3YJI1|C3YJI1_BRAFL Ferredoxin OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_126939 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.1 0.0 0.00046 3.3 81 135 .. 118 182 .. 115 184 .. 0.80 2 ? 3.0 0.1 0.017 1.2e+02 81 95 .. 231 245 .. 228 265 .. 0.89 Alignments for each domain: == domain 1 score: 8.1 bits; conditional E-value: 0.00046 MafB19-deam 81 pCdmCagaivqaglkklvygagnpks.......lnkLkvkekngrvelv....eddckeilkgffk 135 C+ Cag iv + + + + + + + L+v+ k ++ l e+ + +i +++fk tr|C3YJI1|C3YJI1_BRAFL 118 ACSTCAGKIVSGTVDQSDQSFLDDDQiaagkfsIMHLFVQSKK-NYGLLgitgEETIRNIKERVFK 182 6*************99998888787788999888888776554.4445558899999999999987 PP == domain 2 score: 3.0 bits; conditional E-value: 0.017 MafB19-deam 81 pCdmCagaivqaglk 95 C Cag iv + + tr|C3YJI1|C3YJI1_BRAFL 231 ACTTCAGKIVSGTVD 245 6*********99876 PP >> tr|C3XRV2|C3XRV2_BRAFL Uncharacterized protein (Fragment) OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_227149 PE= # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.7 0.0 0.011 76 78 96 .. 14 32 .. 1 42 [. 0.82 2 ? 6.2 1.9 0.0018 13 68 86 .. 46 64 .. 39 75 .. 0.76 Alignments for each domain: == domain 1 score: 3.7 bits; conditional E-value: 0.011 MafB19-deam 78 tlepCdmCagaivqaglkk 96 ++++C+ C g +++lk+ tr|C3XRV2|C3XRV2_BRAFL 14 GVDTCEGCKGFFRRSQLKT 32 6799******999999997 PP == domain 2 score: 6.2 bits; conditional E-value: 0.0018 MafB19-deam 68 krlddatlyvtlepCdmCa 86 k +d a+ +vt+++C +C tr|C3XRV2|C3XRV2_BRAFL 46 KSKDCAINVVTRNLCRYCR 64 334556679*********4 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (138 nodes) Target sequences: 28542 (13248087 residues searched) Passed MSV filter: 763 (0.0267325); expected 570.8 (0.02) Passed bias filter: 524 (0.0183589); expected 570.8 (0.02) Passed Vit filter: 35 (0.00122626); expected 28.5 (0.001) Passed Fwd filter: 4 (0.000140144); expected 0.3 (1e-05) Initial search space (Z): 28542 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.16u 0.01s 00:00:00.17 Elapsed: 00:00:00.09 # Mc/sec: 20313.73 // [ok]