# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/MafB19-deam.hmm.txt
# target sequence database: proteomes/Caenorhabditis_elegans.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MafB19-deam [M=138]
Accession: PF14437.5
Description: MafB19-like deaminase
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.8e-20 72.6 0.0 3e-20 72.5 0.0 1.1 1 tr|Q95Y87|Q95Y87_CAEEL Uncharacterized protein OS=Caenorhabd
9.2e-19 67.7 0.0 1e-18 67.5 0.0 1.1 1 tr|Q95QD6|Q95QD6_CAEEL Uncharacterized protein OS=Caenorhabd
1.8e-16 60.3 0.1 2e-16 60.1 0.1 1.1 1 tr|Q9XXD0|Q9XXD0_CAEEL Uncharacterized protein OS=Caenorhabd
2.5e-13 50.1 0.4 6.6e-13 48.7 0.2 1.7 2 sp|P30648|DCTD_CAEEL Probable deoxycytidylate deaminase OS
0.0098 15.8 0.1 0.012 15.5 0.1 1.2 1 tr|Q22922|Q22922_CAEEL Cytidine deaminase OS=Caenorhabditis
------ inclusion threshold ------
0.05 13.5 0.0 0.11 12.3 0.0 1.6 1 tr|Q9NAH8|Q9NAH8_CAEEL Uncharacterized protein OS=Caenorhabd
Domain annotation for each sequence (and alignments):
>> tr|Q95Y87|Q95Y87_CAEEL Uncharacterized protein OS=Caenorhabditis elegans OX=6239 GN=CELE_R13A5.10 PE=1 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 72.5 0.0 9e-24 3e-20 5 106 .. 2 104 .. 1 150 [. 0.87
Alignments for each domain:
== domain 1 score: 72.5 bits; conditional E-value: 9e-24
MafB19-deam 5 kafrkalaevekatkik.edkigavivkdkkviargsnekelnakataHaEiaalqqAakklkskrlddatlyvtlepCdmCagaiv 90
++++ a++e++k+++++ + + gavivkd+kvi++g+n + +++taHaE+ a++ +k + + l+++ ly+ pC+mC ga
tr|Q95Y87|Q95Y87_CAEEL 2 EFMKLAIEEAKKGMEKGdGGPFGAVIVKDGKVIGSGHNMVLVTKDPTAHAEVTAIRNTCKNVDNFDLSGCQLYTSCYPCPMCMGAAL 88
5799999******9986157******************************************************************* PP
MafB19-deam 91 qaglkklvygagnpks 106
+++ + yga +++
tr|Q95Y87|Q95Y87_CAEEL 89 WSRVDAIYYGATSQDA 104
***********98888 PP
>> tr|Q95QD6|Q95QD6_CAEEL Uncharacterized protein OS=Caenorhabditis elegans OX=6239 GN=CELE_JC8.4 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 67.5 0.0 3.1e-22 1e-18 4 134 .. 11 153 .. 8 157 .. 0.81
Alignments for each domain:
== domain 1 score: 67.5 bits; conditional E-value: 3.1e-22
MafB19-deam 4 ekafrkalaevekatkikedkigavivkdkkviargsnekelnakataHaEiaalqqAakklks...krlddatlyvtlepCdmCag 87
++ +ka +++++a++ +e+++g+v v ++ i+rg n+ + ++t HaE+ a+ k ++ l++ tlyv lepC mC
tr|Q95QD6|Q95QD6_CAEEL 11 TAFLEKAFELAQEALDEDEVPVGCVFVVNGTEIGRGRNRVNETGDPTRHAEMVAVTEMWKEHGTgceDLLKKSTLYVSLEPCIMCSS 97
56788999***********************************************9998876642227899**************** PP
MafB19-deam 88 aivqaglkklvygagnpks.....lnkLkvkekngrvelv....eddckeilkgff 134
a+ q g++k+vyga+np + + + + ++ ++v++v + ++lk f
tr|Q95QD6|Q95QD6_CAEEL 98 AMYQLGIRKMVYGAENPRFggvrsVGSAEKYRMEDNVQIVagiwSERSVAMLKTFY 153
*****************998866655555555566666555555444455555555 PP
>> tr|Q9XXD0|Q9XXD0_CAEEL Uncharacterized protein OS=Caenorhabditis elegans OX=6239 GN=CELE_Y48A6B.7 PE=1 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 60.1 0.1 6e-20 2e-16 3 105 .. 14 118 .. 12 147 .. 0.91
Alignments for each domain:
== domain 1 score: 60.1 bits; conditional E-value: 6e-20
MafB19-deam 3 kekafrkalaevekatkike.dkigaviv.kdkkviargsnekelnakataHaEiaalqqAakklkskrlddatlyvtlepCdmCag 87
+ + +++a+ae+ ++++++ + gav+v ++kv+a+g+n + +++t HaE+ a++ A+k+l++ l++ +ly+ pC+mC g
tr|Q9XXD0|Q9XXD0_CAEEL 14 HAEHMAEAVAEACRGVECGDgGPFGAVVVdSNGKVVAKGHNMVLVTKDPTMHAEMTAIKNACKALGTFDLSGHILYTSCYPCPMCMG 100
67889999999999999975279***999899******************************************************* PP
MafB19-deam 88 aivqaglkklvygagnpk 105
a+ + yga ++
tr|Q9XXD0|Q9XXD0_CAEEL 101 GCLWARFDAIYYGATAQQ 118
**********99998555 PP
>> sp|P30648|DCTD_CAEEL Probable deoxycytidylate deaminase OS=Caenorhabditis elegans OX=6239 GN=ZK643.2 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -0.9 0.0 0.42 1.4e+03 107 123 .. 27 45 .. 18 59 .. 0.57
2 ! 48.7 0.2 2e-16 6.6e-13 10 99 .. 57 160 .. 48 178 .. 0.81
Alignments for each domain:
== domain 1 score: -0.9 bits; conditional E-value: 0.42
MafB19-deam 107 lnkLkvkekngrvelv..e 123
l++Lk++ ++ ++lv +
sp|P30648|DCTD_CAEEL 27 LERLKININSDAKKLVdtN 45
6666666666666665321 PP
== domain 2 score: 48.7 bits; conditional E-value: 2e-16
MafB19-deam 10 alaevekatkikedkigaviv.kdkkviargsn..................ekelnakataHaEiaalqqAakklkskrlddatlyvtl 79
+++ + ++k + ++g+viv kd+ ++ +g+n e++ ++ HaE++a+ k ++l d+t+yvtl
sp|P30648|DCTD_CAEEL 57 IAKVTSLRSKDPNTQVGCVIVdKDNCIVSVGYNgfpigvdddvfrwdkedpEDN-KHLYVVHAEMNAIIN---KR-CTTLHDCTVYVTL 140
556666677777889******899999*******************99764444.555678***999964...34.4559********* PP
MafB19-deam 80 epCdmCagaivqaglkklvy 99
pC+ Ca +++q+++kk+ +
sp|P30648|DCTD_CAEEL 141 FPCNKCAQMLIQSRVKKVYF 160
*****************976 PP
>> tr|Q22922|Q22922_CAEEL Cytidine deaminase OS=Caenorhabditis elegans OX=6239 GN=cdd-1 PE=1 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.5 0.1 3.7e-06 0.012 5 86 .. 14 96 .. 10 133 .. 0.64
Alignments for each domain:
== domain 1 score: 15.5 bits; conditional E-value: 3.7e-06
MafB19-deam 5 kafrkalaevekat.kikedkiga.viv.kdkkviargsnekelnakataHaEiaalqqAakklkskrlddatlyvtle.pCdmCa 86
+ ka+ +e+a+ k ++ k+ga ++ ++ +i+ +++ + at aE a+ A k+ k + ++ ++le pC++C+
tr|Q22922|Q22922_CAEEL 14 QLVDKAIGAMENAYcKYSNFKVGAaLVCdDGEIIIGANHE--NASYGATICAERSAIVTALTKGHRK-FKYIVVATELEaPCSPCG 96
5556666666666536778899994333244455555555..77899*************9998887.455555554434666662 PP
>> tr|Q9NAH8|Q9NAH8_CAEEL Uncharacterized protein OS=Caenorhabditis elegans OX=6239 GN=CELE_Y47D3A.14 PE=4 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.3 0.0 3.4e-05 0.11 79 106 .. 214 241 .. 207 273 .. 0.79
Alignments for each domain:
== domain 1 score: 12.3 bits; conditional E-value: 3.4e-05
MafB19-deam 79 lepCdmCagaivqaglkklvygagnpks 106
epC mC a+v ++k++ y+ + ++
tr|Q9NAH8|Q9NAH8_CAEEL 214 TEPCAMCSMALVHFRVKRVFYARNSRNG 241
69******************99886655 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (138 nodes)
Target sequences: 20008 (8229220 residues searched)
Passed MSV filter: 648 (0.032387); expected 400.2 (0.02)
Passed bias filter: 404 (0.0201919); expected 400.2 (0.02)
Passed Vit filter: 34 (0.00169932); expected 20.0 (0.001)
Passed Fwd filter: 6 (0.00029988); expected 0.2 (1e-05)
Initial search space (Z): 20008 [actual number of targets]
Domain search space (domZ): 6 [number of targets reported over threshold]
# CPU time: 0.10u 0.01s 00:00:00.11 Elapsed: 00:00:00.05
# Mc/sec: 22712.65
//
[ok]