# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/MafB19-deam.hmm.txt
# target sequence database: proteomes/Ciona_intestinalis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MafB19-deam [M=138]
Accession: PF14437.5
Description: MafB19-like deaminase
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.1e-13 50.1 0.0 2.9e-13 49.6 0.0 1.2 1 tr|F6ZC01|F6ZC01_CIOIN Uncharacterized protein OS=Ciona inte
8e-11 41.7 1.9 1.9e-09 37.3 0.5 2.4 2 tr|H2XV35|H2XV35_CIOIN Uncharacterized protein OS=Ciona inte
------ inclusion threshold ------
0.045 13.4 0.1 0.097 12.3 0.0 1.6 2 tr|F6QPH0|F6QPH0_CIOIN Ribonuclease H1 OS=Ciona intestinalis
Domain annotation for each sequence (and alignments):
>> tr|F6ZC01|F6ZC01_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 49.6 0.0 5.3e-17 2.9e-13 2 106 .. 29 148 .. 28 172 .. 0.87
Alignments for each domain:
== domain 1 score: 49.6 bits; conditional E-value: 5.3e-17
MafB19-deam 2 dkekafrkalaevekatkikedkigaviv.kdkkviargsn..................ekelnakataHaEiaalqqAakklkskr 69
+++++f++ +++ +++k + ++ga iv ++k++++g+n +++ HaE++a++ +s
tr|F6ZC01|F6ZC01_CIOIN 29 EWKDYFMSVAFLSAQRSKDPSTQVGACIVnDENKIVGIGYNgmpngchddelpwsrtgdWLDTKYPYVCHAEMNAIMNK--NCSS-- 111
6899*********************97774779**********************99874555677889*******964..4444.. PP
MafB19-deam 70 lddatlyvtlepCdmCagaivqaglkklvygagnpks 106
+++ ++v l pC+ Ca++i+q+g+k++ y +++ k
tr|F6ZC01|F6ZC01_CIOIN 112 VSGCRIFVALFPCNECAKLIIQSGIKEVFYMSDKHKD 148
59****************************9997765 PP
>> tr|H2XV35|H2XV35_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 3.2 0.0 0.011 63 8 66 .. 186 249 .. 179 263 .. 0.66
2 ! 37.3 0.5 3.3e-13 1.9e-09 69 126 .. 289 355 .. 274 360 .. 0.82
Alignments for each domain:
== domain 1 score: 3.2 bits; conditional E-value: 0.011
MafB19-deam 8 rkalaevekatkikedkigavivkdkkviargsn........ekelnakataHaEiaalqqAakklk 66
+ ++ +++ +++++ ++ v++k + via+ aH +a++ A + ++
tr|H2XV35|H2XV35_CIOIN 186 IQTAKSANNLQPAENVGVVVVDSKTNTVIATTFDlrnipceiT---TGVNVAHPLNHAVMVAIDLVA 249
56778888888999999999**********9988554443221...223334444466666655555 PP
== domain 2 score: 37.3 bits; conditional E-value: 3.3e-13
MafB19-deam 69 rlddatlyvtlepCdmCagaivqaglkklvygagnpks.......lnkLkvkekngrvelv....eddc 126
d+tlyvt+epC mC a+ +++k++ yg++ + + ln +ke n+r+ ++ e++c
tr|H2XV35|H2XV35_CIOIN 289 ICTDLTLYVTREPCVMCCMALLHSRIKRVFYGVECQRGgfgsaykLN--AMKELNHRFVVFkgvlENKC 355
4689******************************8888999974444..57899***977777777666 PP
>> tr|F6QPH0|F6QPH0_CIOIN Ribonuclease H1 OS=Ciona intestinalis OX=7719 PE=3 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -3.0 0.1 0.92 5.1e+03 14 41 .. 90 117 .. 80 134 .. 0.59
2 ? 12.3 0.0 1.7e-05 0.097 51 118 .. 191 258 .. 179 272 .. 0.89
Alignments for each domain:
== domain 1 score: -3.0 bits; conditional E-value: 0.92
MafB19-deam 14 vekatkikedkigavivkdkkviargsn 41
k +k ++ ++ +++ ++kv + +
tr|F6QPH0|F6QPH0_CIOIN 90 SAKESKPNNIPQSSIVSRKRKVKPDSNS 117
4555666666777777777777665554 PP
== domain 2 score: 12.3 bits; conditional E-value: 1.7e-05
MafB19-deam 51 aHaEiaalqqAakklkskrlddatlyvtlepCdmCagaivqaglkklvygagnpkslnkLkvkekngr 118
+ aEiaa+++A k+ ++ +++ + ++ + C vq+ ++k +a+ + + k++++e ++
tr|F6QPH0|F6QPH0_CIOIN 191 QRAEIAAVNKAIKQAIDVGHKQLLIRTDSKFVIDCITKWVQGWIRKGWVKADGKPVIHKVEFQEMLKN 258
669*******************************************9999997777999998876555 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (138 nodes)
Target sequences: 16678 (5370518 residues searched)
Passed MSV filter: 506 (0.0303394); expected 333.6 (0.02)
Passed bias filter: 301 (0.0180477); expected 333.6 (0.02)
Passed Vit filter: 15 (0.000899388); expected 16.7 (0.001)
Passed Fwd filter: 3 (0.000179878); expected 0.2 (1e-05)
Initial search space (Z): 16678 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.07u 0.00s 00:00:00.07 Elapsed: 00:00:00.04
# Mc/sec: 18528.29
//
[ok]