# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/MafB19-deam.hmm.txt # target sequence database: proteomes/Drosophila_melanogaster.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: MafB19-deam [M=138] Accession: PF14437.5 Description: MafB19-like deaminase Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.1e-19 67.6 0.1 8.7e-19 67.3 0.1 1.1 1 tr|Q9VEM0|Q9VEM0_DROME RE41712p OS=Drosophila melanogaster O 3e-10 39.6 0.0 3.8e-10 39.3 0.0 1.2 1 sp|Q9VWA2|DCTD_DROME Probable deoxycytidylate deaminase OS 1.5e-05 24.4 0.0 2.8e-05 23.5 0.0 1.4 1 tr|Q7K157|Q7K157_DROME LD07624p OS=Drosophila melanogaster O Domain annotation for each sequence (and alignments): >> tr|Q9VEM0|Q9VEM0_DROME RE41712p OS=Drosophila melanogaster OX=7227 GN=BcDNA:RE41712 PE=2 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 67.3 0.1 1.9e-22 8.7e-19 5 133 .. 3 144 .. 1 147 [. 0.81 Alignments for each domain: == domain 1 score: 67.3 bits; conditional E-value: 1.9e-22 MafB19-deam 5 kafrkalaevekatkikedkigavivkdkkviargsnekelnakataHaEi...aalqqAakkl...kskrlddatlyvtlepCdmC 85 +++++al e++ a +++e+++g+v v+++kv+arg ne +++ +at HaE +a+ + + + ++ t++vt+epC mC tr|Q9VEM0|Q9VEM0_DROME 3 AFMEEALVEARRARDAGEVPVGCVFVHGDKVVARGGNEVNVHRNATRHAEFiciDAILASCRERrlpARQLFSEITVVVTVEPCIMC 89 57999*********************************************8777777766655322278899*************** PP MafB19-deam 86 agaivqaglkklvygagnpks..lnkLkvkek.ngrvelv....eddckeilkgf 133 a+ g+k+++yg++n + ++++v + +r+e++ d+ ++lk+f tr|Q9VEM0|Q9VEM0_DROME 90 SAALHTLGVKEIIYGCENDRFggKTVVDVAAVvGHRIEITggvrADEAMALLKDF 144 *****************99988855555544314555555555566666777776 PP >> sp|Q9VWA2|DCTD_DROME Probable deoxycytidylate deaminase OS=Drosophila melanogaster OX=7227 GN=CG6951 PE=2 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 39.3 0.0 8.4e-14 3.8e-10 3 102 .. 28 148 .. 26 175 .. 0.85 Alignments for each domain: == domain 1 score: 39.3 bits; conditional E-value: 8.4e-14 MafB19-deam 3 kekafrkalaevekatkikedkigaviv.kdkkviargsn........................ekelnakataHaEiaalqqAakklk 66 ++++f+ + k++k ++ga iv +++++a+g+n e ++ HaE++a+ sp|Q9VWA2|DCTD_DROME 28 WDDYFMATSLLSAKRSKDPVTQVGACIVdSQNRIVAIGYNgfprncsddvfpwskakkgsqefdPLEDKKMYVVHAEANAILNS----N 112 67777777777777777777778886665999*****************************9774455677889*******988....5 PP MafB19-deam 67 skrlddatlyvtlepCdmCagaivqaglkklvygag 102 + l+++ ly+tl pC+ Ca++i+q g+ +++y ++ sp|Q9VWA2|DCTD_DROME 113 GMSLSGTRLYTTLFPCNECAKLIIQVGISQVLYLSD 148 5568***************************99876 PP >> tr|Q7K157|Q7K157_DROME LD07624p OS=Drosophila melanogaster OX=7227 GN=Dmel\CG10927 PE=2 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.5 0.0 6.1e-09 2.8e-05 47 123 .. 267 354 .. 254 359 .. 0.81 Alignments for each domain: == domain 1 score: 23.5 bits; conditional E-value: 6.1e-09 MafB19-deam 47 akataHaEiaalqqAakklkskrlddat...lyvtlepCdmCagaivqaglkklvygagnpks.....lnkLkvkekngrvelv... 122 +k+++ E++a+q A + l++ + +t +y +epC mC a+v ++ k++ + + +++ + +v e n+++e++ tr|Q7K157|Q7K157_DROME 267 EKSRECKEVDAVQGA-DNLAKFGPYLCTgydIYLLQEPCLMCSMALVHSRAKRVFFVKNSENGalatrFQLHSVRELNHHYEVFqft 352 5678889******99.6666666666655559**********************99999888899888777788999***9999666 PP MafB19-deam 123 .e 123 + tr|Q7K157|Q7K157_DROME 353 tK 354 52 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (138 nodes) Target sequences: 13786 (7394964 residues searched) Passed MSV filter: 481 (0.0348905); expected 275.7 (0.02) Passed bias filter: 279 (0.0202379); expected 275.7 (0.02) Passed Vit filter: 15 (0.00108806); expected 13.8 (0.001) Passed Fwd filter: 3 (0.000217612); expected 0.1 (1e-05) Initial search space (Z): 13786 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.08u 0.00s 00:00:00.08 Elapsed: 00:00:00.04 # Mc/sec: 25512.63 // [ok]