# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/MafB19-deam.hmm.txt # target sequence database: proteomes/Monodelphis_domestica.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: MafB19-deam [M=138] Accession: PF14437.5 Description: MafB19-like deaminase Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.6e-22 77.6 0.1 1.1e-21 77.3 0.1 1.2 1 tr|F6T4D9|F6T4D9_MONDO Adenosine deaminase, tRNA specific 2 1.7e-15 57.2 0.0 2e-15 57.0 0.0 1.1 1 tr|F6UWJ2|F6UWJ2_MONDO dCMP deaminase OS=Monodelphis domesti 5.9e-12 45.8 1.4 8.9e-05 22.5 0.2 2.6 2 tr|F7A1J3|F7A1J3_MONDO Cytidine and dCMP deaminase domain co 7.7e-12 45.4 0.2 1.4e-08 34.8 0.0 2.2 2 tr|F7FLP8|F7FLP8_MONDO Adenosine deaminase, tRNA specific 3 0.0096 15.9 0.0 0.012 15.5 0.0 1.2 1 tr|F7EXQ1|F7EXQ1_MONDO Apolipoprotein B mRNA editing enzyme Domain annotation for each sequence (and alignments): >> tr|F6T4D9|F6T4D9_MONDO Adenosine deaminase, tRNA specific 2 OS=Monodelphis domestica OX=13616 GN=ADAT2 PE=3 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 77.3 0.1 2.6e-25 1.1e-21 2 135 .. 21 172 .. 20 175 .. 0.83 Alignments for each domain: == domain 1 score: 77.3 bits; conditional E-value: 2.6e-25 MafB19-deam 2 dkekafrkalaevekatkikedkigavivkdkkviargsnekelnakataHaEiaalqqAak......klkskrlddatlyvtlepC 82 + e++++ a+ ++++a++ +e+++g++ v ++kv+a+g ne ++ ++at HaE+ a+ q + k + + ++lyvt+epC tr|F6T4D9|F6T4D9_MONDO 21 EREAWMERAMHMAKEALENGEVPVGCLMVYNNKVLAKGRNEVNQTKNATRHAEMVAIDQVLEwchrygKSPTEVFEHTVLYVTVEPC 107 6799*******************************************************8762222224445567899********* PP MafB19-deam 83 dmCagaivqaglkklvygagnpks......lnkLkvkekngrvelv......eddckeilkgffk 135 mCa a+ +++ +vyg++n+ + l + +n+ ++ e+lk f k tr|F6T4D9|F6T4D9_MONDO 108 IMCAAALRLMKIPLVVYGCQNERFggcgsvLDIASADLPNTGTPFQcipgyqAEEAVEMLKTFYK 172 **********************9999988766666666666665446677775555577777766 PP >> tr|F6UWJ2|F6UWJ2_MONDO dCMP deaminase OS=Monodelphis domestica OX=13616 GN=DCTD PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 57.0 0.0 4.8e-19 2e-15 3 103 .. 25 141 .. 23 176 .. 0.80 Alignments for each domain: == domain 1 score: 57.0 bits; conditional E-value: 4.8e-19 MafB19-deam 3 kekafrkalaevekatkikedkigaviv.kdkkviargsn...................ekelnakataHaEiaalqqAakklkskr 69 + ++f+ +++ +++k + ++ga iv ++k++++g+n + +++ HaE +a++ +++ tr|F6UWJ2|F6UWJ2_MONDO 25 WPEYFMAVAFLSAQRSKDPNSQVGACIVnAENKIVGIGYNgmpngcsddllpwsrtaekKLDTKYPYVCHAELNAIMNK---NSA-D 107 6789999999999999999999999666589************************99655555566789*******974...444.4 PP MafB19-deam 70 lddatlyvtlepCdmCagaivqaglkklvygagn 103 +++t+yv l pC+ Ca++i+qag+k++++ +++ tr|F6UWJ2|F6UWJ2_MONDO 108 VKGCTMYVALFPCNECAKLIIQAGIKEVIFMSDK 141 79***************************98873 PP >> tr|F7A1J3|F7A1J3_MONDO Cytidine and dCMP deaminase domain containing 1 OS=Monodelphis domestica OX=13616 GN=CDADC1 P # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.5 0.2 2.1e-08 8.9e-05 52 106 .. 109 158 .. 59 195 .. 0.70 2 ! 21.6 0.1 3.8e-08 0.00016 41 101 .. 370 448 .. 325 482 .. 0.78 Alignments for each domain: == domain 1 score: 22.5 bits; conditional E-value: 2.1e-08 MafB19-deam 52 HaEiaalqqAakklkskrlddatlyvtlepCdmCagaivqaglkklvygagnpks 106 Ha al + +++ +++ ly ++pC+ C+++iv+ag+ ++ y ++p+ tr|F7A1J3|F7A1J3_MONDO 109 HAGQIALIRH-----GSKMKNCDLYFSRKPCSACLKMIVNAGVNRISYWPADPEI 158 4444444433.....445899*************************998887765 PP == domain 2 score: 21.6 bits; conditional E-value: 3.8e-08 MafB19-deam 41 n...................ekel.nakataHaEiaalqqAakklkskrlddatlyvtlepCdmCagaivqaglkklvyga 101 n ++e + HaE +al ++ +k ++ +++vt+ pCd C +i ag+k++ g tr|F7A1J3|F7A1J3_MONDO 370 NafpvgseyadfphmddkqkDREIrKFRYIIHAEQNALTFRCQEIKPE--ERSMIFVTKCPCDECVPLIKGAGIKQIYAGD 448 4555555555555555555433330334567**************999..9*************************98764 PP >> tr|F7FLP8|F7FLP8_MONDO Adenosine deaminase, tRNA specific 3 OS=Monodelphis domestica OX=13616 GN=ADAT3 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 8.6 0.0 0.00042 1.8 3 53 .. 159 210 .. 157 222 .. 0.84 2 ! 34.8 0.0 3.3e-12 1.4e-08 75 131 .. 275 340 .. 269 342 .] 0.84 Alignments for each domain: == domain 1 score: 8.6 bits; conditional E-value: 0.00042 MafB19-deam 3 kekafrkalaevekatkikedkigaviv..kdkkviargsnekelnakataHa 53 ++++++a+ ++++++++ + igav+v + v+a+g+ ++ +++ Ha tr|F7FLP8|F7FLP8_MONDO 159 MQAYMEQAIWAAQQGAEKGMKSIGAVVVdpATETVLAVGHDCRS-ASNPLLHA 210 589**********************999556789*****99666.56677776 PP == domain 2 score: 34.8 bits; conditional E-value: 3.3e-12 MafB19-deam 75 lyvtlepCdmCagaivqaglkklvygagnpks.....lnkLkvkekngrvelv....eddckeilk 131 ly+t epC mCa a+v ++++++ yg + p++ + + + n+r+e++ ed c ++k tr|F7FLP8|F7FLP8_MONDO 275 LYITSEPCVMCAMALVHSRIQRVFYGIASPDGalgtkYKIHTRQDLNHRFEVFrgilEDRCYSLIK 340 9*******************************98654444445568******99999999976665 PP >> tr|F7EXQ1|F7EXQ1_MONDO Apolipoprotein B mRNA editing enzyme catalytic subunit 2 OS=Monodelphis domestica OX=13616 GN # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.5 0.0 2.9e-06 0.012 35 111 .. 81 152 .. 53 190 .. 0.79 Alignments for each domain: == domain 1 score: 15.5 bits; conditional E-value: 2.9e-06 MafB19-deam 35 viargsnekelnakataHaEiaalqqAakklkskrlddatlyvtlepCdmCagaivqaglkklvygagnpks...lnkLk 111 i rg+ e+e +a aHaE a ++ + ++t yv pC Ca ++ + + +++n+k + +L+ tr|F7EXQ1|F7EXQ1_MONDO 81 QISRGYLEDE---HAAAHAEEAFFKTILPTFDPALRYNVTWYVSSSPCAACA-----DRISSTLSKTKNLKMlllVGRLF 152 5667777555...999*****9999999***********************6.....78888888888888765544444 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (138 nodes) Target sequences: 21272 (11266248 residues searched) Passed MSV filter: 813 (0.0382193); expected 425.4 (0.02) Passed bias filter: 463 (0.0217657); expected 425.4 (0.02) Passed Vit filter: 28 (0.00131628); expected 21.3 (0.001) Passed Fwd filter: 5 (0.000235051); expected 0.2 (1e-05) Initial search space (Z): 21272 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.14u 0.01s 00:00:00.15 Elapsed: 00:00:00.07 # Mc/sec: 22210.60 // [ok]