# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/MafB19-deam.hmm.txt
# target sequence database: proteomes/Natronomonas_moolapensis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MafB19-deam [M=138]
Accession: PF14437.5
Description: MafB19-like deaminase
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.7e-19 66.6 0.0 3e-19 66.5 0.0 1.1 1 tr|M1Y5J8|M1Y5J8_NATM8 Deaminase domain protein OS=Natronomo
------ inclusion threshold ------
0.038 11.1 0.7 0.071 10.2 0.7 1.4 1 tr|M1XR18|M1XR18_NATM8 Cytidine deaminase OS=Natronomonas mo
Domain annotation for each sequence (and alignments):
>> tr|M1Y5J8|M1Y5J8_NATM8 Deaminase domain protein OS=Natronomonas moolapensis (strain DSM 18674 / JCM 14361 / 8.8.11)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 66.5 0.0 2.2e-22 3e-19 2 102 .. 10 110 .. 9 139 .. 0.93
Alignments for each domain:
== domain 1 score: 66.5 bits; conditional E-value: 2.2e-22
MafB19-deam 2 dkekafrkalaevekatkikedkigavivkdkkviargsnekelnakataHaEiaalqqAakklkskrlddatlyvtlepCdmCaga 88
d+++ +r a ++++at+ ++++ g v v d+ v+a sn+ ++ +++ H E + +A+ ++ + ++++y+ epC+mCag
tr|M1Y5J8|M1Y5J8_NATM8 10 DHDAHMRRAFDLAREATERGDEPFGSVLVRDDAVVAAESNRIVTEDDVRRHPELHLAYRACRETSPAERAETVMYTSTEPCPMCAGG 96
8999*********************************************************************************** PP
MafB19-deam 89 ivqaglkklvygag 102
+++ag ++vy +g
tr|M1Y5J8|M1Y5J8_NATM8 97 MARAGFGRVVYSVG 110
***********987 PP
>> tr|M1XR18|M1XR18_NATM8 Cytidine deaminase OS=Natronomonas moolapensis (strain DSM 18674 / JCM 14361 / 8.8.11) OX=268
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.2 0.7 5.2e-05 0.071 20 86 .. 21 90 .. 2 96 .. 0.65
Alignments for each domain:
== domain 1 score: 10.2 bits; conditional E-value: 5.2e-05
MafB19-deam 20 ikedkiga.vivkdkkviargsnekelnakataHaEiaalqqAakklkskrlddatlyv....tlepCdmCa 86
+e +ga ++ d+ + +g n ++ n + HaE al +A+ ++ + + + ++ pC+mC
tr|M1XR18|M1XR18_NATM8 21 YSEYYVGAaIETGDGTTF-TGCNVENANYSNSVHAEELALSKAVAAGHRG-FEAVAVSSdrrdGVTPCGMCR 90
455566663555555555.667778889999************8777665.333333331111346888885 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (138 nodes)
Target sequences: 2723 (809592 residues searched)
Passed MSV filter: 74 (0.0271759); expected 54.5 (0.02)
Passed bias filter: 64 (0.0235035); expected 54.5 (0.02)
Passed Vit filter: 11 (0.00403966); expected 2.7 (0.001)
Passed Fwd filter: 2 (0.000734484); expected 0.0 (1e-05)
Initial search space (Z): 2723 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01
# Mc/sec: 11172.37
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