# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/MafB19-deam.hmm.txt
# target sequence database:        proteomes/Petromyzon_marinus.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       MafB19-deam  [M=138]
Accession:   PF14437.5
Description: MafB19-like deaminase
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
    5.6e-09   35.5   0.0    1.4e-08   34.1   0.0    1.6  2  tr|S4S1B4|S4S1B4_PETMA  Adenosine deaminase, tRNA-specific 3 


Domain annotation for each sequence (and alignments):
>> tr|S4S1B4|S4S1B4_PETMA  Adenosine deaminase, tRNA-specific 3 OS=Petromyzon marinus OX=7757 PE=4 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.16   2.2e+03       6      41 ..     175     212 ..     171     229 .. 0.66
   2 !   34.1   0.0   1.1e-12   1.4e-08      75     131 ..     294     359 ..     288     361 .] 0.88

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.16
             MafB19-deam   6 afrkalaevekatkikedkigaviv..kdkkviargsn 41 
                              +  al+ +++++  + +++ga +     ++v+a+++ 
  tr|S4S1B4|S4S1B4_PETMA 175 HMGRALQAARAGLARGTRPVGAAVAdpRTGEVVAVAHD 212
                             56677788888888899999985442467788888876 PP

  == domain 2  score: 34.1 bits;  conditional E-value: 1.1e-12
             MafB19-deam  75 lyvtlepCdmCagaivqaglkklvygagnpks....lnkLkvk.ekngrvelv....eddckeilk 131
                             ++vt+epC mCa a+v ++++++ yg+  p++      kL+ + + n+r+e++    e++c ++++
  tr|S4S1B4|S4S1B4_PETMA 294 VFVTREPCVMCAMALVHSRVQRVFYGTPSPDGalgsAYKLHANdNLNHRFEVFrgvmEEECRQLSS 359
                             79*******************************9997777765267***************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (138 nodes)
Target sequences:                        13539  (5048892 residues searched)
Passed MSV filter:                       410  (0.0302829); expected 270.8 (0.02)
Passed bias filter:                      303  (0.0223798); expected 270.8 (0.02)
Passed Vit filter:                        12  (0.000886328); expected 13.5 (0.001)
Passed Fwd filter:                         1  (7.38607e-05); expected 0.1 (1e-05)
Initial search space (Z):              13539  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.06u 0.00s 00:00:00.06 Elapsed: 00:00:00.03
# Mc/sec: 23224.90
//
[ok]