# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/MafB19-deam.hmm.txt # target sequence database: proteomes/Pseudomonas_aeruginosa.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: MafB19-deam [M=138] Accession: PF14437.5 Description: MafB19-like deaminase Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.7e-31 104.9 0.0 1e-30 104.6 0.0 1.1 1 tr|Q9HXM8|Q9HXM8_PSEAE tRNA-specific adenosine deaminase OS= 3.8e-22 76.9 0.0 4.5e-22 76.6 0.0 1.1 1 tr|Q9I0Y3|Q9I0Y3_PSEAE Probable deaminase OS=Pseudomonas aer 1.9e-12 45.5 0.0 2.8e-12 44.9 0.0 1.2 1 tr|Q9HWX2|Q9HWX2_PSEAE Riboflavin biosynthesis protein RibD Domain annotation for each sequence (and alignments): >> tr|Q9HXM8|Q9HXM8_PSEAE tRNA-specific adenosine deaminase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 104.6 0.0 5.6e-34 1e-30 5 138 .] 30 173 .. 26 173 .. 0.94 Alignments for each domain: == domain 1 score: 104.6 bits; conditional E-value: 5.6e-34 MafB19-deam 5 kafrkalaevekatkikedkigavivkdkkviargsnekelnakataHaEiaalqqAakklkskrlddatlyvtlepCdmCagaivq 91 +++r+alae+eka+ ++e+++gav v ++++i+rg n+ +++ aHaE+ a++ Aa ++ rl + tlyvtlepC+mC g++v tr|Q9HXM8|Q9HXM8_PSEAE 30 HFMREALAEAEKAAALGEVPVGAVLVREGEIIGRGFNRPISSHDPSAHAEMLAIRMAAAEAGNYRLPGSTLYVTLEPCSMCSGLLVH 116 689***********************************999********************************************** PP MafB19-deam 92 aglkklvygagnpks......lnkLkvkekngrvelv....eddckeilkgffkklr 138 a++++lvyg+ +pks + ++ n+rv ++ ++c++ l+ ff++ r tr|Q9HXM8|Q9HXM8_PSEAE 117 ARIQRLVYGTVEPKSgavesrGRFFEQEHLNHRVMVEggvlAEECSQALSAFFRARR 173 *****************8876555677788999988899999***********9876 PP >> tr|Q9I0Y3|Q9I0Y3_PSEAE Probable deaminase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JC # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 76.6 0.0 2.4e-25 4.5e-22 2 107 .. 2 111 .. 1 123 [. 0.93 Alignments for each domain: == domain 1 score: 76.6 bits; conditional E-value: 2.4e-25 MafB19-deam 2 dkekafrkalaevekatkikedkigavivkdkkviargsnekelnakataHaEiaalqqAakklkskrlddatlyvtlepCdmCaga 88 ++e ++r+a+a++++ +++++++ gav v d++v+arg n+ +++ aHaE +a++qA+++l+s rld++++y pC+mC+ a tr|Q9I0Y3|Q9I0Y3_PSEAE 2 SDETFMREAIALARANVEAGGRPFGAVLVRDGRVLARGVNQIHETHDPSAHAELQAIRQASQALGSPRLDGCVIYASGHPCPMCLAA 88 68999********************************************************************************** PP MafB19-deam 89 ivqaglkklvygagnpks....l 107 + g++ + ++ +n+++ l tr|Q9I0Y3|Q9I0Y3_PSEAE 89 MHLCGIQAAWFAYSNEDGeafgL 111 *******9999999998755554 PP >> tr|Q9HWX2|Q9HWX2_PSEAE Riboflavin biosynthesis protein RibD OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 44.9 0.0 1.5e-15 2.8e-12 22 137 .. 26 144 .. 5 145 .. 0.76 Alignments for each domain: == domain 1 score: 44.9 bits; conditional E-value: 1.5e-15 MafB19-deam 22 edkigavivkdkkviargsnekelnakataHaEiaalqqAakklkskrlddatlyvtlepCd......mCagaivqaglkklvygag 102 + +g+v vkd++v++ g + HaE++al+qA + ++ +at yvtlepC+ +Ca a+v ag+ ++v +++ tr|Q9HWX2|Q9HWX2_PSEAE 26 NPRVGCVLVKDGQVVGEGWHVRA----GEPHAEVHALRQA-----GENARGATAYVTLEPCShfgrtpPCADALVGAGVARVVAAMQ 103 4579***************9444....789**********.....4456899*********64444448****************** PP MafB19-deam 103 npks......lnkLkvkekngrvelveddckeilkgffkkl 137 +p+ l +L + + + e + e+ +gf+k++ tr|Q9HWX2|Q9HWX2_PSEAE 104 DPNPevagrgLLRLMQAGIAVQSGVLEAEARELNIGFIKRM 144 99988899886666555666666666888888888888876 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (138 nodes) Target sequences: 5563 (1857172 residues searched) Passed MSV filter: 97 (0.0174366); expected 111.3 (0.02) Passed bias filter: 90 (0.0161783); expected 111.3 (0.02) Passed Vit filter: 9 (0.00161783); expected 5.6 (0.001) Passed Fwd filter: 3 (0.000539277); expected 0.1 (1e-05) Initial search space (Z): 5563 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 12814.49 // [ok]