# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/MafB19-deam.hmm.txt
# target sequence database: proteomes/Saccharomyces_cerevisiae.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MafB19-deam [M=138]
Accession: PF14437.5
Description: MafB19-like deaminase
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.9e-20 70.9 0.0 3.6e-20 70.6 0.0 1.1 1 sp|Q12178|FCY1_YEAST Cytosine deaminase OS=Saccharomyces cer
8.4e-17 59.7 0.1 1.4e-16 59.0 0.1 1.3 1 sp|P47058|TAD2_YEAST tRNA-specific adenosine deaminase subun
1.5e-15 55.7 0.1 2.3e-15 55.1 0.1 1.3 1 sp|P06773|DCTD_YEAST Deoxycytidylate deaminase OS=Saccharomy
1.9e-06 26.2 0.0 4.1e-06 25.1 0.0 1.6 1 sp|Q12362|RIB2_YEAST Bifunctional protein RIB2 OS=Saccharomy
3.1e-06 25.5 0.0 7.2e-06 24.3 0.0 1.6 1 sp|Q9URQ3|TAD3_YEAST tRNA-specific adenosine deaminase subun
0.0054 14.9 3.9 0.012 13.9 3.8 1.7 1 sp|P32489|MEI5_YEAST Meiosis protein 5 OS=Saccharomyces cere
Domain annotation for each sequence (and alignments):
>> sp|Q12178|FCY1_YEAST Cytosine deaminase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=FCY1 P
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 70.6 0.0 3.6e-23 3.6e-20 4 135 .. 12 146 .. 9 148 .. 0.85
Alignments for each domain:
== domain 1 score: 70.6 bits; conditional E-value: 3.6e-23
MafB19-deam 4 ekafrkalaevekatkikedkiga..vivkdkkviargsnekelnakataHaEiaalqqAakklkskrlddatlyvtlepCdmCagaiv 90
+k + a++e+ ++k ++++ig + kd+ v++rg+n + ++ +at H+Ei l+ l++k +d+tly+tl pCdmC gai+
sp|Q12178|FCY1_YEAST 12 QKGMDIAYEEAALGYKEGGVPIGGclINNKDGSVLGRGHNMRFQKGSATLHGEISTLENC-GRLEGKVYKDTTLYTTLSPCDMCTGAII 99
677888999*************98666779***************************986.8888888********************* PP
MafB19-deam 91 qaglkklvygag.npkslnkLkvkekngrvelv.eddckeilkgffk 135
g+++ v g + n ks + +++ ++v +v ++ ck+i+k+f+
sp|Q12178|FCY1_YEAST 100 MYGIPRCVVGENvNFKSKGEKYLQTRGHEVVVVdDERCKKIMKQFID 146
******9999772445545555566667775558999********97 PP
>> sp|P47058|TAD2_YEAST tRNA-specific adenosine deaminase subunit TAD2 OS=Saccharomyces cerevisiae (strain ATCC 204508
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 59.0 0.1 1.4e-19 1.4e-16 2 113 .. 2 122 .. 1 137 [. 0.84
Alignments for each domain:
== domain 1 score: 59.0 bits; conditional E-value: 1.4e-19
MafB19-deam 2 dkekafrkalaevekatkikedkigaviv..kdkkviargsnekelnakataHaEiaalqqAakklkskr....lddatlyvtlepCdm 84
++ k +r a+ +++ a++ +e +++++ v ++v+a g n+++ aHaE + q l+s +d tlyvt+epC m
sp|P47058|TAD2_YEAST 2 QHIKHMRTAVRLARYALDHDETPVACIFVhtPTGQVMAYGMNDTNKSLTGVAHAEFMGIDQIKAMLGSRGvvdvFKDITLYVTVEPCIM 90
68899*********************77733679**************************98777776652222699************ PP
MafB19-deam 85 Cagaivqaglkklvygagnpks...lnkLkvk 113
Ca a+ q ++ k+v+g+gn+ + ++L+v+
sp|P47058|TAD2_YEAST 91 CASALKQLDIGKVVFGCGNERFggnGTVLSVN 122
*******************9986664444444 PP
>> sp|P06773|DCTD_YEAST Deoxycytidylate deaminase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 55.1 0.1 2.2e-18 2.3e-15 2 104 .. 162 282 .. 161 306 .. 0.90
Alignments for each domain:
== domain 1 score: 55.1 bits; conditional E-value: 2.2e-18
MafB19-deam 2 dkekafrkalaevekatkikedkigavivkdkkviargsn.....................ekelnakataHaEiaalqqAakklkskr 69
+++ +f+k + ++ ++++ ++ +g+viv + +via+g+n ++l+ HaE +al A + +
sp|P06773|DCTD_YEAST 162 SWDSYFMKLATLAASRSNCMKRRVGCVIVRECRVIATGYNgtprhltncfnggcprcndgdSRNLHTCLCLHAEENALLEA---GRDRV 247
5899********************************************************99999*************999...77777 PP
MafB19-deam 70 lddatlyvtlepCdmCagaivqaglkklvygagnp 104
++atly + pC C ivq g+ ++vy ++
sp|P06773|DCTD_YEAST 248 GQNATLYCDTCPCLTCSVKIVQTGISEVVYSQSYR 282
88***************************987754 PP
>> sp|Q12362|RIB2_YEAST Bifunctional protein RIB2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 25.1 0.0 4.1e-09 4.1e-06 3 126 .. 435 576 .. 433 582 .. 0.77
Alignments for each domain:
== domain 1 score: 25.1 bits; conditional E-value: 4.1e-09
MafB19-deam 3 kekafrkalaevekatkik.edkigavivkdkkviargsnekelnakataHaEiaalqqAak...klkskrlddatlyvtlepCd.... 83
+ +++++a++e++k + k +gav v++ +v+a+g+ ++ HaE al + ++ ++ + +++ly+t epC+
sp|Q12362|RIB2_YEAST 435 HRRYMEMAVKEAGKCGPTKtAFSVGAVLVHGTQVLATGYSRE---LPGNTHAEQCALIKYSQlhpNCPTIVPMGTVLYTTMEPCSfrls 520
789999999999997765515689****************44...36778****999877662225678899************74444 PP
MafB19-deam 84 ....mCagaiv.qaglkklvygagnpks.......lnkLkvkekngrvelv..eddc 126
C ++++ q+++ ++ g+++p++ lnkL+ + n + e++c
sp|Q12362|RIB2_YEAST 521 gnepCCDRILAtQGAIGTVFVGVMEPDTfvknntsLNKLESHGVNYIQ-IPgyEEEC 576
4442476766459**************999999999999988777543.22456666 PP
>> sp|Q9URQ3|TAD3_YEAST tRNA-specific adenosine deaminase subunit TAD3 OS=Saccharomyces cerevisiae (strain ATCC 204508
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 24.3 0.0 7.1e-09 7.2e-06 75 104 .. 247 276 .. 236 306 .. 0.80
Alignments for each domain:
== domain 1 score: 24.3 bits; conditional E-value: 7.1e-09
MafB19-deam 75 lyvtlepCdmCagaivqaglkklvygagnp 104
+y t+epC+mC a++ ++++++v+ ++ +
sp|Q9URQ3|TAD3_YEAST 247 VYLTHEPCSMCSMALIHSRVRRVVFLTEMQ 276
7***********************988833 PP
>> sp|P32489|MEI5_YEAST Meiosis protein 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MEI5 PE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.9 3.8 1.2e-05 0.012 31 131 .. 49 154 .. 18 189 .. 0.78
Alignments for each domain:
== domain 1 score: 13.9 bits; conditional E-value: 1.2e-05
MafB19-deam 31 kdkkviargsnekelnakataHaEiaalqqAakklkskrl..ddatlyvtlepCdmCagaivqaglkklvygagnpkslnk.Lkvkekn 116
++k ia+ + ++ +++ ++ +E + lqqA+k l++ + ++ + + C+m + i ++ l k+++ +g++++l+k ++ k+
sp|P32489|MEI5_YEAST 49 TNQKEIAIKN-RELTKQLTLLRQENNHLQQACKILSENKIieNRKSIEKWRTICEMELSFILNSTLIKINRMGGYKDFLEKeMEAKKRR 136
5566666654.4667899999*************998886115555555689**************************86537777777 PP
MafB19-deam 117 grvelv...eddckeilk 131
++++ ed++ ei +
sp|P32489|MEI5_YEAST 137 LEYQIDngmEDQICEIKE 154
777666777777777754 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (138 nodes)
Target sequences: 6049 (2936363 residues searched)
Passed MSV filter: 216 (0.0357084); expected 121.0 (0.02)
Passed bias filter: 149 (0.0246322); expected 121.0 (0.02)
Passed Vit filter: 50 (0.00826583); expected 6.0 (0.001)
Passed Fwd filter: 6 (0.000991899); expected 0.1 (1e-05)
Initial search space (Z): 6049 [actual number of targets]
Domain search space (domZ): 6 [number of targets reported over threshold]
# CPU time: 0.07u 0.00s 00:00:00.07 Elapsed: 00:00:00.04
# Mc/sec: 10130.45
//
[ok]