# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/MafB19-deam.hmm.txt # target sequence database: proteomes/Strongylocentrotus_purpuratus.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: MafB19-deam [M=138] Accession: PF14437.5 Description: MafB19-like deaminase Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.2e-18 67.0 0.0 3.2e-18 66.4 0.0 1.2 1 tr|W4XTK1|W4XTK1_STRPU Uncharacterized protein OS=Strongyloc 1.1e-16 61.5 5.9 1.7e-16 60.9 3.5 2.4 2 tr|W4XIS1|W4XIS1_STRPU Uncharacterized protein OS=Strongyloc 4.8e-15 56.2 0.0 8.3e-15 55.4 0.0 1.4 1 tr|W4YNN8|W4YNN8_STRPU Uncharacterized protein OS=Strongyloc 4.5e-12 46.6 0.1 5.1e-12 46.4 0.1 1.1 1 tr|W4YE23|W4YE23_STRPU Uncharacterized protein OS=Strongyloc 3.4e-06 27.5 0.0 6.6e-06 26.6 0.0 1.4 1 tr|W4ZJJ1|W4ZJJ1_STRPU Uncharacterized protein OS=Strongyloc Domain annotation for each sequence (and alignments): >> tr|W4XTK1|W4XTK1_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 66.4 0.0 5.7e-22 3.2e-18 13 106 .. 8 107 .. 2 126 .. 0.86 Alignments for each domain: == domain 1 score: 66.4 bits; conditional E-value: 5.7e-22 MafB19-deam 13 evekatkikedkigavivkdkkviargsnekelnakataHaEiaalqqAakklkskrld......datlyvtlepCdmCagaivqag 93 ++++a+ +e+++g++ v ++++i++g n + ++at HaEi al+ A+ +k+l+ ++ l+vt+epC mCaga+ g tr|W4XTK1|W4XTK1_STRPU 8 QAKQALGRGEVPVGCLLVYEDQIIGTGGNAVNETKNATRHAEILALEEAMRWCDDKQLEreevfsRTKLFVTVEPCIMCAGALRIMG 94 78999999*****************************************9988888775222222689******************* PP MafB19-deam 94 lkklvygagnpks 106 +kk+vyg+ n+ + tr|W4XTK1|W4XTK1_STRPU 95 IKKVVYGCRNERF 107 *********9987 PP >> tr|W4XIS1|W4XIS1_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 60.9 3.5 2.9e-20 1.7e-16 3 102 .. 9 121 .. 7 189 .. 0.77 2 ? -1.8 0.0 0.68 3.9e+03 90 127 .. 192 229 .. 191 239 .. 0.66 Alignments for each domain: == domain 1 score: 60.9 bits; conditional E-value: 2.9e-20 MafB19-deam 3 kekafrkalaevekatkikedkigavivkdkkviargsnekelnakataHaEiaalqqAakklkskrld......datlyvtlepCd 83 +ek++++a++++++a+ +e+++g++ v ++++i++g n + ++at HaEi al+ A+ +k+l+ ++ l+vt+epC tr|W4XIS1|W4XIS1_STRPU 9 DEKWMKEAVNMAKQALGRGEVPVGCLLVYEDQIIGTGGNAANETKNATRHAEILALEEAMRWCDDKQLErgelfsQTKLFVTVEPCI 95 689********************************************************99888887752222226899******** PP MafB19-deam 84 mCagai.......vqaglkklvygag 102 mCaga+ ++a++k+ ++ ++ tr|W4XIS1|W4XIS1_STRPU 96 MCAGALrimaievAEAKVKRSIKDSA 121 ***99632222224555555555555 PP == domain 2 score: -1.8 bits; conditional E-value: 0.68 MafB19-deam 90 vqaglkklvygagnpkslnkLkvkekngrvelveddck 127 +qa + +l + +++ ++++ ++ +++ed+++ tr|W4XIS1|W4XIS1_STRPU 192 IQATMMELSKEMMKAGIIEEMMEDTFESLDDVEEDATQ 229 67888888888885555777777776666666655554 PP >> tr|W4YNN8|W4YNN8_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 55.4 0.0 1.4e-18 8.3e-15 3 102 .. 66 181 .. 64 222 .. 0.87 Alignments for each domain: == domain 1 score: 55.4 bits; conditional E-value: 1.4e-18 MafB19-deam 3 kekafrkalaevekatkikedkigaviv.kdkkviargsn...................ekelnakataHaEiaalqqAakklkskr 69 +e++f++ +++ +++k + ++ga iv ++kk++++g+n e++ HaE +a++ +++ tr|W4YNN8|W4YNN8_STRPU 66 WEDYFMSVAFLSAQRSKDPSSQVGACIVnEEKKIVGIGYNgmpngcnddvlpwsrdsedWLETKYPYVCHAELNAIMNK---NSA-D 148 899********************99666599***********************999765567777899*******974...444.4 PP MafB19-deam 70 lddatlyvtlepCdmCagaivqaglkklvygag 102 +++t+yv l pC+ Ca++i+q+g++k+v+ ++ tr|W4YNN8|W4YNN8_STRPU 149 VKGCTMYVALFPCNECAKVIIQSGIRKIVFLSD 181 79**************************99776 PP >> tr|W4YE23|W4YE23_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 46.4 0.1 9e-16 5.1e-12 25 103 .. 7 101 .. 4 134 .. 0.86 Alignments for each domain: == domain 1 score: 46.4 bits; conditional E-value: 9e-16 MafB19-deam 25 iga.vivkdkkviargsn...................ekelnakataHaEiaalqqAakklkskrlddatlyvtlepCdmCagaivq 91 +ga ++ ++k++++g+n e+++ HaE++a++ +s +++t+yv l pC+ C ++i+q tr|W4YE23|W4YE23_STRPU 7 VGAcIVNDENKIVGIGYNgmprgcsdealpwqrknddWLETKIPYVCHAEMNAVMNK--NCAS--VKGCTIYVALFPCNECTKVIMQ 89 5651555889**********************99877667889999********964..4444..59******************** PP MafB19-deam 92 aglkklvygagn 103 +g+k++vy ++ tr|W4YE23|W4YE23_STRPU 90 SGIKEVVYMSDT 101 ********9873 PP >> tr|W4ZJJ1|W4ZJJ1_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.6 0.0 1.2e-09 6.6e-06 75 107 .. 231 267 .. 224 292 .. 0.79 Alignments for each domain: == domain 1 score: 26.6 bits; conditional E-value: 1.2e-09 MafB19-deam 75 lyvtlepCdmCagaivqaglkklvygagnpks....l 107 ly+t+epC mCa a+v ++++++ y + p++ tr|W4ZJJ1|W4ZJJ1_STRPU 231 LYITQEPCVMCAMALVHSRIRRVFYIDSHPDGalgsR 267 8************************999888765442 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (138 nodes) Target sequences: 28594 (14266044 residues searched) Passed MSV filter: 906 (0.031685); expected 571.9 (0.02) Passed bias filter: 604 (0.0211233); expected 571.9 (0.02) Passed Vit filter: 37 (0.00129398); expected 28.6 (0.001) Passed Fwd filter: 5 (0.000174862); expected 0.3 (1e-05) Initial search space (Z): 28594 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.16u 0.01s 00:00:00.17 Elapsed: 00:00:00.09 # Mc/sec: 21874.60 // [ok]