# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/MafB19-deam.hmm.txt # target sequence database: proteomes/Thermococcus_kodakarensis.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: MafB19-deam [M=138] Accession: PF14437.5 Description: MafB19-like deaminase Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.6e-21 72.9 0.0 3.4e-21 72.6 0.0 1.1 1 tr|Q5JHS0|Q5JHS0_THEKO Deoxycytidylate deaminase OS=Thermoco 9.5e-18 61.4 0.0 1.5e-17 60.7 0.0 1.3 1 tr|Q5JD36|Q5JD36_THEKO Riboflavin biosynthesis protein RibD Domain annotation for each sequence (and alignments): >> tr|Q5JHS0|Q5JHS0_THEKO Deoxycytidylate deaminase OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 72.6 0.0 2.9e-24 3.4e-21 2 122 .. 22 169 .. 21 177 .. 0.89 Alignments for each domain: == domain 1 score: 72.6 bits; conditional E-value: 2.9e-24 MafB19-deam 2 dkekafrkalaevekatkikedkigavivkdkkviargsn...............ekelnakataHaEiaalqqAakklkskrldda 73 +k+++f+ ++++v+ ++ + +gav vkd+ ++a+g+n +++ + HaE +++ Aa k++s ++a tr|Q5JHS0|Q5JHS0_THEKO 22 TKDEYFMLIAKLVSLRATCPRLRVGAVAVKDGYILATGYNgaprgmdhcidvgclIVDGHCHRAVHAEQNVIAMAARKGISL--EGA 106 5899**************************************************96677888999**********8888877..*** PP MafB19-deam 74 tlyvtlepCdmCagaivqaglkklvygagnpks..............lnkLkvkekngrvelv 122 tlyvt+ pCd C +++++ag++++vy ++p+ ++ ++k k +rv+l+ tr|Q5JHS0|Q5JHS0_THEKO 107 TLYVTHFPCDTCFKLLINAGIREIVYEEMYPNEateillreaqekgiVKIRQFKLKKERVRLF 169 *******************************99888888888888866666777777777777 PP >> tr|Q5JD36|Q5JD36_THEKO Riboflavin biosynthesis protein RibD OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 60.7 0.0 1.3e-20 1.5e-17 3 134 .. 5 144 .. 3 148 .. 0.80 Alignments for each domain: == domain 1 score: 60.7 bits; conditional E-value: 1.3e-20 MafB19-deam 3 kekafrkalaevekat..kikedkigavivkdkkviargsnekelnakataHaEiaalqqAakklkskrlddatlyvtlepCd.... 83 +ek++r al++++ + + +gavivkd+k+i++g ++ +HaEi+a++ A k k+ +at+yvtlepC+ tr|Q5JD36|Q5JD36_THEKO 5 DEKFMRLALELAKRGEgwTNPNPMVGAVIVKDGKIIGVGWH----RKFGEKHAEINAIEDA--KAKGYDVRGATMYVTLEPCShwgk 85 6777887777776554004445679****************....556899**********..5555556************64444 PP MafB19-deam 84 ..mCagaivqaglkklvygagnpks......lnkLkvkekngrvelveddckeilkgff 134 +Ca i+q g k++v ++++p+ ++k+ + +v l e++ ++ + f+ tr|Q5JD36|Q5JD36_THEKO 86 qpPCADRIIQEGFKRVVVAMEDPNPlvagqgIEKMRKAGIEVEVGLLEEEARKLNEIFL 144 448*******************9999999999999988888888888888877666555 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (138 nodes) Target sequences: 2301 (637680 residues searched) Passed MSV filter: 81 (0.0352021); expected 46.0 (0.02) Passed bias filter: 69 (0.029987); expected 46.0 (0.02) Passed Vit filter: 7 (0.00304216); expected 2.3 (0.001) Passed Fwd filter: 2 (0.000869187); expected 0.0 (1e-05) Initial search space (Z): 2301 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok]