# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/MafB19-deam.hmm.txt
# target sequence database: proteomes/Trichomonas_vaginalis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MafB19-deam [M=138]
Accession: PF14437.5
Description: MafB19-like deaminase
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.9e-23 83.6 0.2 3.2e-23 83.4 0.2 1.1 1 tr|A2F5I8|A2F5I8_TRIVA Cytidine and deoxycytidylate deaminas
0.0025 19.0 0.6 0.0059 17.8 0.6 1.6 1 tr|A2DS60|A2DS60_TRIVA Cytidine and deoxycytidylate deaminas
Domain annotation for each sequence (and alignments):
>> tr|A2F5I8|A2F5I8_TRIVA Cytidine and deoxycytidylate deaminase zinc-binding region family protein OS=Trichomonas vagi
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 83.4 0.2 1.3e-27 3.2e-23 2 106 .. 17 123 .. 16 158 .. 0.87
Alignments for each domain:
== domain 1 score: 83.4 bits; conditional E-value: 1.3e-27
MafB19-deam 2 dkekafrkalaevekatkikedkigavivkdkkviargsnekelnakataHaEiaalqqAakklk..skrlddatlyvtlepCdmCa 86
+ek+++ al+ + +a++++e+ +g+vi+++++via+g n+++ +++at HaE ++ + + ++ l++ tlyvt epC mCa
tr|A2F5I8|A2F5I8_TRIVA 17 MHEKYMQLALKAADDAFDAGEVAVGCVIIHNGQVIASGGNQTNAKNDATRHAELVTFKHLKESRSdyKQILKESTLYVTCEPCIMCA 103
599***************************************************88877666555114559**************** PP
MafB19-deam 87 gaivqaglkklvygagnpks 106
ai g++++vyg+ n +
tr|A2F5I8|A2F5I8_TRIVA 104 SAIKMMGIPRVVYGCLNDRF 123
**************997765 PP
>> tr|A2DS60|A2DS60_TRIVA Cytidine and deoxycytidylate deaminase zinc-binding region family protein OS=Trichomonas vagi
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.8 0.6 2.3e-07 0.0059 46 114 .. 171 245 .. 139 261 .. 0.73
Alignments for each domain:
== domain 1 score: 17.8 bits; conditional E-value: 2.3e-07
MafB19-deam 46 nakataHaEiaalqqAakklkskrlddat...lyvtlepCdmCagaivqaglkklvygagnpks...lnkLkvke 114
+ +H+ i+a+ A+ ++ +t +y epC mC a+v +++ +l + npk +n+ ++++
tr|A2DS60|A2DS60_TRIVA 171 CECCFEHGVIDAVGEASRWAIQNDSYLCTnldVYCYYEPCCMCTMAMVHSRVGRLFFIEPNPKYggvMNQAHINQ 245
445678999999999988777766655554448*************************99999977777666654 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (138 nodes)
Target sequences: 50190 (17055200 residues searched)
Passed MSV filter: 1599 (0.0318589); expected 1003.8 (0.02)
Passed bias filter: 921 (0.0183503); expected 1003.8 (0.02)
Passed Vit filter: 50 (0.000996214); expected 50.2 (0.001)
Passed Fwd filter: 2 (3.98486e-05); expected 0.5 (1e-05)
Initial search space (Z): 50190 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.22u 0.01s 00:00:00.23 Elapsed: 00:00:00.11
# Mc/sec: 21396.52
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