# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/MafB19-deam.hmm.txt # target sequence database: proteomes/Trichoplax_adhaerens.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: MafB19-deam [M=138] Accession: PF14437.5 Description: MafB19-like deaminase Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.6e-15 55.7 0.1 3.7e-15 55.3 0.1 1.2 1 tr|B3S9W6|B3S9W6_TRIAD Uncharacterized protein OS=Trichoplax 5.7e-15 54.6 0.0 7.2e-15 54.3 0.0 1.1 1 tr|B3S781|B3S781_TRIAD Uncharacterized protein OS=Trichoplax 4.8e-11 41.9 0.4 7.6e-10 38.1 0.4 2.2 1 tr|B3RRC1|B3RRC1_TRIAD Uncharacterized protein OS=Trichoplax Domain annotation for each sequence (and alignments): >> tr|B3S9W6|B3S9W6_TRIAD Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_50979 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 55.3 0.1 9.6e-19 3.7e-15 2 88 .. 7 99 .. 6 107 .. 0.87 Alignments for each domain: == domain 1 score: 55.3 bits; conditional E-value: 9.6e-19 MafB19-deam 2 dkekafrkalaevekatkikedkigavivkdkkviargsnekelnakataHaEiaalqqAakklkskrl......ddatlyvtlepCdm 84 + +++++ a +++++a+ ++e+++g+v v ++k+i++g ne + ++at HaE+ a++ A+k ++ + ++ l vt+epC m tr|B3S9W6|B3S9W6_TRIAD 7 NSNEWMEIAFELANEALVAGEVPVGCVLVFGNKIIGKGRNEVNEVKNATRHAEMVAIEEAYKWCENNQVrpsvafSNSQLLVTVEPCIM 95 6789**********************************************************8776554112222566799******** PP MafB19-deam 85 Caga 88 C a tr|B3S9W6|B3S9W6_TRIAD 96 CSMA 99 *766 PP >> tr|B3S781|B3S781_TRIAD Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_50803 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 54.3 0.0 1.9e-18 7.2e-15 2 102 .. 18 134 .. 17 150 .. 0.87 Alignments for each domain: == domain 1 score: 54.3 bits; conditional E-value: 1.9e-18 MafB19-deam 2 dkekafrkalaevekatkikedkigaviv.kdkkviargsn...................ekelnakataHaEiaalqqAakklksk 68 ++e++f+ +++ ++++k + ++ga iv +++k++++g+n +++ HaE++a+ s tr|B3S781|B3S781_TRIAD 18 SWEEYFMAVAFLSSQRSKDPNTQVGACIVnQENKIVGIGYNgmpngcnddalpwareasnALDTKYPYVCHAEMNAILNK----NSF 100 799**********************966659************************9886544555566789999999654....556 PP MafB19-deam 69 rlddatlyvtlepCdmCagaivqaglkklvygag 102 l+++++yv l pC+ Ca++i+q+g+k++v+ ++ tr|B3S781|B3S781_TRIAD 101 DLKGCIIYVALFPCNECAKLIIQSGIKEVVFVSD 134 69****************************9876 PP >> tr|B3RRC1|B3RRC1_TRIAD Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_54182 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 38.1 0.4 2e-13 7.6e-10 14 129 .. 133 274 .. 118 283 .] 0.73 Alignments for each domain: == domain 1 score: 38.1 bits; conditional E-value: 2e-13 MafB19-deam 14 vekatkikedkigaviv..kdkkviargsn..ekelnakataHaEi.................aalqqAakklkskrlddat...ly 76 ++ a++ + kigav v + +kv+a++s ++++ + ++Ha + ++ + + ++r +t ly tr|B3RRC1|B3RRC1_TRIAD 133 ISTALENSMFKIGAVMVdpESNKVLAKASDgrSRNVDSSLLKHAVMtciddigkmhvaventnNSSKLPNEESNNQRGYLCTgydLY 219 55667777889999777668899999999887777888888888878888888888777777655555555555555555655559* PP MafB19-deam 77 vtlepCdmCagaivqaglkklvygagnpks.....lnkLkvke.kngrvelveddckei 129 vt+epC mCa a+v +++k++ y++++++ k++v+e n+++e++ k+i tr|B3RRC1|B3RRC1_TRIAD 220 VTKEPCVMCAMALVHSRIKRVFYAVEDKEYgalgsRYKIHVHEgLNHHFEVF----KNI 274 **************************87778887755666665368888888....444 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (138 nodes) Target sequences: 11518 (5222075 residues searched) Passed MSV filter: 398 (0.0345546); expected 230.4 (0.02) Passed bias filter: 244 (0.0211842); expected 230.4 (0.02) Passed Vit filter: 21 (0.00182323); expected 11.5 (0.001) Passed Fwd filter: 3 (0.000260462); expected 0.1 (1e-05) Initial search space (Z): 11518 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.07u 0.00s 00:00:00.07 Elapsed: 00:00:00.04 # Mc/sec: 18016.16 // [ok]