# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/MafB19-deam.hmm.txt # target sequence database: proteomes/Trypanosoma_brucei.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: MafB19-deam [M=138] Accession: PF14437.5 Description: MafB19-like deaminase Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-12 46.6 1.5 4.2e-11 41.7 1.5 2.6 1 tr|Q57W17|Q57W17_TRYB2 Deaminase, putative OS=Trypanosoma br 6.1e-06 25.0 0.0 1.2e-05 24.0 0.0 1.4 1 tr|Q381Q7|Q381Q7_TRYB2 Deaminase, putative OS=Trypanosoma br ------ inclusion threshold ------ 0.041 12.6 0.0 0.075 11.7 0.0 1.4 1 tr|Q387T2|Q387T2_TRYB2 Uncharacterized protein OS=Trypanosom Domain annotation for each sequence (and alignments): >> tr|Q57W17|Q57W17_TRYB2 Deaminase, putative OS=Trypanosoma brucei brucei (strain 927/4 GUTat10.1) OX=185431 GN=Tb927. # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 41.7 1.5 1.5e-14 4.2e-11 6 117 .. 27 174 .. 24 185 .. 0.79 Alignments for each domain: == domain 1 score: 41.7 bits; conditional E-value: 1.5e-14 MafB19-deam 6 afrkalaevekatkikedkigaviv.kdkkviargsn................ekelnakataHaEi....aalqqAakklk..... 66 +++ al+e+ a++ +e+++g+v v d+ a+++ ++ + +a+aHaE + l+qA+ ++ tr|Q57W17|Q57W17_TRYB2 27 FMQAALKEATCALEEGEVPVGCVLVkADSSTAAQAQAgddlalqklivargrnATNRKGHALAHAEFvaveELLRQATAGTSenigg 113 689999****************999345556666666**************988888999******977774456776544311112 PP MafB19-deam 67 .......skrlddatlyvtlepCdmCagaivqaglkklvygagnpks...lnkLkvkekng 117 s+ l d +lyv +epC mCa ++ + +++k+ +g+ np + ++L+v+++ + tr|Q57W17|Q57W17_TRYB2 114 ggncgavSQDLADYVLYVVVEPCIMCAAMLLYNRVRKVYFGCTNPRFggnGTVLSVHNSYK 174 222222356799*********************************9988877888877655 PP >> tr|Q381Q7|Q381Q7_TRYB2 Deaminase, putative OS=Trypanosoma brucei brucei (strain 927/4 GUTat10.1) OX=185431 GN=Tb11.0 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.0 0.0 4.2e-09 1.2e-05 69 122 .. 278 337 .. 269 347 .. 0.86 Alignments for each domain: == domain 1 score: 24.0 bits; conditional E-value: 4.2e-09 MafB19-deam 69 rlddatlyvtlepCdmCagaivqaglkklvygagnpks......lnkLkvkekngrvelv 122 ++++ ++v +epC mC a+v ++++++ y np ++ ++e n++++++ tr|Q381Q7|Q381Q7_TRYB2 278 LANGMDMFVSHEPCVMCSMALVHSRVRRVFYCFPNPVHgglgstVSIHAIQELNHHFRVF 337 5677889*************************9999878998887888888899999887 PP >> tr|Q387T2|Q387T2_TRYB2 Uncharacterized protein OS=Trypanosoma brucei brucei (strain 927/4 GUTat10.1) OX=185431 GN=Tb # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.7 0.0 2.6e-05 0.075 67 92 .. 140 165 .. 127 181 .. 0.85 Alignments for each domain: == domain 1 score: 11.7 bits; conditional E-value: 2.6e-05 MafB19-deam 67 skrlddatlyvtlepCdmCagaivqa 92 + +d + ly t +C Caga++ a tr|Q387T2|Q387T2_TRYB2 140 QHSKDATFLYFTATTCARCAGALADA 165 55577888**************9976 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (138 nodes) Target sequences: 8561 (4332363 residues searched) Passed MSV filter: 224 (0.0261652); expected 171.2 (0.02) Passed bias filter: 154 (0.0179886); expected 171.2 (0.02) Passed Vit filter: 14 (0.00163532); expected 8.6 (0.001) Passed Fwd filter: 3 (0.000350426); expected 0.1 (1e-05) Initial search space (Z): 8561 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.05u 0.00s 00:00:00.05 Elapsed: 00:00:00.03 # Mc/sec: 19928.87 // [ok]