# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/MafB19-deam.hmm.txt
# target sequence database: proteomes/Trypanosoma_brucei.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MafB19-deam [M=138]
Accession: PF14437.5
Description: MafB19-like deaminase
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.3e-12 46.6 1.5 4.2e-11 41.7 1.5 2.6 1 tr|Q57W17|Q57W17_TRYB2 Deaminase, putative OS=Trypanosoma br
6.1e-06 25.0 0.0 1.2e-05 24.0 0.0 1.4 1 tr|Q381Q7|Q381Q7_TRYB2 Deaminase, putative OS=Trypanosoma br
------ inclusion threshold ------
0.041 12.6 0.0 0.075 11.7 0.0 1.4 1 tr|Q387T2|Q387T2_TRYB2 Uncharacterized protein OS=Trypanosom
Domain annotation for each sequence (and alignments):
>> tr|Q57W17|Q57W17_TRYB2 Deaminase, putative OS=Trypanosoma brucei brucei (strain 927/4 GUTat10.1) OX=185431 GN=Tb927.
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 41.7 1.5 1.5e-14 4.2e-11 6 117 .. 27 174 .. 24 185 .. 0.79
Alignments for each domain:
== domain 1 score: 41.7 bits; conditional E-value: 1.5e-14
MafB19-deam 6 afrkalaevekatkikedkigaviv.kdkkviargsn................ekelnakataHaEi....aalqqAakklk..... 66
+++ al+e+ a++ +e+++g+v v d+ a+++ ++ + +a+aHaE + l+qA+ ++
tr|Q57W17|Q57W17_TRYB2 27 FMQAALKEATCALEEGEVPVGCVLVkADSSTAAQAQAgddlalqklivargrnATNRKGHALAHAEFvaveELLRQATAGTSenigg 113
689999****************999345556666666**************988888999******977774456776544311112 PP
MafB19-deam 67 .......skrlddatlyvtlepCdmCagaivqaglkklvygagnpks...lnkLkvkekng 117
s+ l d +lyv +epC mCa ++ + +++k+ +g+ np + ++L+v+++ +
tr|Q57W17|Q57W17_TRYB2 114 ggncgavSQDLADYVLYVVVEPCIMCAAMLLYNRVRKVYFGCTNPRFggnGTVLSVHNSYK 174
222222356799*********************************9988877888877655 PP
>> tr|Q381Q7|Q381Q7_TRYB2 Deaminase, putative OS=Trypanosoma brucei brucei (strain 927/4 GUTat10.1) OX=185431 GN=Tb11.0
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 24.0 0.0 4.2e-09 1.2e-05 69 122 .. 278 337 .. 269 347 .. 0.86
Alignments for each domain:
== domain 1 score: 24.0 bits; conditional E-value: 4.2e-09
MafB19-deam 69 rlddatlyvtlepCdmCagaivqaglkklvygagnpks......lnkLkvkekngrvelv 122
++++ ++v +epC mC a+v ++++++ y np ++ ++e n++++++
tr|Q381Q7|Q381Q7_TRYB2 278 LANGMDMFVSHEPCVMCSMALVHSRVRRVFYCFPNPVHgglgstVSIHAIQELNHHFRVF 337
5677889*************************9999878998887888888899999887 PP
>> tr|Q387T2|Q387T2_TRYB2 Uncharacterized protein OS=Trypanosoma brucei brucei (strain 927/4 GUTat10.1) OX=185431 GN=Tb
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.7 0.0 2.6e-05 0.075 67 92 .. 140 165 .. 127 181 .. 0.85
Alignments for each domain:
== domain 1 score: 11.7 bits; conditional E-value: 2.6e-05
MafB19-deam 67 skrlddatlyvtlepCdmCagaivqa 92
+ +d + ly t +C Caga++ a
tr|Q387T2|Q387T2_TRYB2 140 QHSKDATFLYFTATTCARCAGALADA 165
55577888**************9976 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (138 nodes)
Target sequences: 8561 (4332363 residues searched)
Passed MSV filter: 224 (0.0261652); expected 171.2 (0.02)
Passed bias filter: 154 (0.0179886); expected 171.2 (0.02)
Passed Vit filter: 14 (0.00163532); expected 8.6 (0.001)
Passed Fwd filter: 3 (0.000350426); expected 0.1 (1e-05)
Initial search space (Z): 8561 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.05u 0.00s 00:00:00.05 Elapsed: 00:00:00.03
# Mc/sec: 19928.87
//
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