# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/MafB19-deam.hmm.txt # target sequence database: proteomes/Xenopus_tropicalis.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: MafB19-deam [M=138] Accession: PF14437.5 Description: MafB19-like deaminase Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-21 77.2 0.1 1.6e-21 77.0 0.1 1.1 1 sp|Q0P4H0|ADAT2_XENTR tRNA-specific adenosine deaminase 2 O 2.4e-15 56.9 0.1 2.9e-15 56.6 0.1 1.1 1 tr|F6UJZ5|F6UJZ5_XENTR dCMP deaminase OS=Xenopus tropicalis 1.3e-13 51.3 0.3 2.2e-06 27.9 0.1 2.7 2 tr|F6SQI7|F6SQI7_XENTR Cytidine and dCMP deaminase domain-co 2.9e-08 34.0 0.7 8.8e-06 25.9 0.6 2.2 2 tr|F6UTI9|F6UTI9_XENTR Adenosine deaminase, tRNA-specific 3 ------ inclusion threshold ------ 0.095 12.9 0.0 0.15 12.2 0.0 1.3 1 tr|Q6DIS6|Q6DIS6_XENTR Apolipoprotein B mRNA-editing enzyme, Domain annotation for each sequence (and alignments): >> sp|Q0P4H0|ADAT2_XENTR tRNA-specific adenosine deaminase 2 OS=Xenopus tropicalis OX=8364 GN=adat2 PE=2 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 77.0 0.1 3.2e-25 1.6e-21 3 111 .. 5 122 .. 3 156 .. 0.85 Alignments for each domain: == domain 1 score: 77.0 bits; conditional E-value: 3.2e-25 MafB19-deam 3 kekafrkalaevekatkikedkigavivkdkkviargsnekelnakataHaEiaalqqA...akklkskrl...ddatlyvtlepCdm 84 +++++ka +++++a++ +e+++g++ v d++v+++g ne + ++at HaE+ a+ q ++k+++k ++ +lyvt+epC m sp|Q0P4H0|ADAT2_XENTR 5 IQNWMHKAFQMAQDALNNGEVPVGCLMVYDNQVVGKGRNEVNETKNATRHAEMVAIDQVldwCEKNSKKSRdvfENIVLYVTVEPCIM 92 589******************************************************97444677777654222689*********** PP MafB19-deam 85 Cagaivqaglkklvygagnpks...lnkLk 111 Caga+ +++ +vyg+ n+ + ++L+ sp|Q0P4H0|ADAT2_XENTR 93 CAGALRLLKIPLVVYGCRNERFggcGSVLN 122 ******************998877744444 PP >> tr|F6UJZ5|F6UJZ5_XENTR dCMP deaminase OS=Xenopus tropicalis OX=8364 GN=dctd PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.6 0.1 6e-19 2.9e-15 3 105 .. 26 142 .. 24 169 .. 0.86 Alignments for each domain: == domain 1 score: 56.6 bits; conditional E-value: 6e-19 MafB19-deam 3 kekafrkalaevekatkikedkigaviv.kdkkviargsn...................ekelnakataHaEiaalqqAakklkskr 69 + ++f+ ++++ +++k + ++ga iv ++k++++g+n + +++ HaE +a++ +++ tr|F6UJZ5|F6UJZ5_XENTR 26 WCEYFMAVAFLAAQRSKDPNSQVGACIVnSENKIVGIGYNgmpngchddvlpwartaedRLDTKYPYVCHAELNAIMNK--NTAD-- 108 7789**************9****99666589*************************9876777777899********75..4444.. PP MafB19-deam 70 lddatlyvtlepCdmCagaivqaglkklvygagnpk 105 +++t+yv l pC+ Ca++++qag+k++++ ++ k tr|F6UJZ5|F6UJZ5_XENTR 109 VKGCTMYVALFPCNECAKLVIQAGIKEVIFMSD--K 142 59***************************9887..3 PP >> tr|F6SQI7|F6SQI7_XENTR Cytidine and dCMP deaminase domain-containing 1 OS=Xenopus tropicalis OX=8364 GN=cdadc1 PE=4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.9 0.1 4.6e-10 2.2e-06 57 107 .. 95 145 .. 58 179 .. 0.70 2 ! 20.5 0.0 8.6e-08 0.00042 48 102 .. 384 436 .. 325 466 .. 0.74 Alignments for each domain: == domain 1 score: 27.9 bits; conditional E-value: 4.6e-10 MafB19-deam 57 alqqAakklkskrlddatlyvtlepCdmCagaivqaglkklvygagnpks.l 107 a q A+ k +sk l+d+ ly ++pC++C+++iv+ag+ ++ y ++p+ l tr|F6SQI7|F6SQI7_XENTR 95 AGQIAVIKHGSK-LKDCDLYFSRKPCSVCLKMIVNAGVNRISYWPSDPEMsL 145 444455555555.9****************************9999888763 PP == domain 2 score: 20.5 bits; conditional E-value: 8.6e-08 MafB19-deam 48 kataHaEiaalqqAakklkskrlddatlyvtlepCdmCagaivqaglkklvygag 102 HaE +a+ ++ + ++++++vt+ pCd C +i ag++++ g tr|F6SQI7|F6SQI7_XENTR 384 RYIIHAEQNAITFRCNEINPE--EKTMIFVTKCPCDECVPLIKGAGIQQIYAGDV 436 4567********999999998..9*************************987754 PP >> tr|F6UTI9|F6UTI9_XENTR Adenosine deaminase, tRNA-specific 3 OS=Xenopus tropicalis OX=8364 GN=adat3 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 5.8 0.0 0.003 14 6 62 .. 163 221 .. 160 230 .. 0.79 2 ! 25.9 0.6 1.8e-09 8.8e-06 75 128 .. 277 339 .. 271 342 .. 0.80 Alignments for each domain: == domain 1 score: 5.8 bits; conditional E-value: 0.003 MafB19-deam 6 afrkalaevekatkikedkigaviv..kdkkviargsnekelnakataHaEiaalqqAa 62 ++ a++ +++ +++ +gav+v +++v+a+ s +++ + ++ Ha + a+ a tr|F6UTI9|F6UTI9_XENTR 163 YMGTAVEAARASQARGGKGVGAVVVdpRNGEVLAISSDRTDEDGGPLLHACMVAIDMVA 221 566667777777777788899988866899********************999986544 PP == domain 2 score: 25.9 bits; conditional E-value: 1.8e-09 MafB19-deam 75 lyvtlepCdmCagaivqaglkklvygagnpks....lnkLkvk.ekngrvelv....eddcke 128 +yvt+epC mCa a+ +++ ++ yg++ p + +L+ n+r+++ ed+c++ tr|F6UTI9|F6UTI9_XENTR 277 IYVTREPCVMCAMALLHSRIFSVYYGCATPGGalgtCYRLHCGpGLNHRFQVYrgimEDECQK 339 9***************************88878777666666424677777777777777765 PP >> tr|Q6DIS6|Q6DIS6_XENTR Apolipoprotein B mRNA-editing enzyme, catalytic polypeptide-like 2 OS=Xenopus tropicalis OX=8 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.2 0.0 3.1e-05 0.15 46 91 .. 91 136 .. 53 147 .. 0.85 Alignments for each domain: == domain 1 score: 12.2 bits; conditional E-value: 3.1e-05 MafB19-deam 46 nakataHaEiaalqqAakklkskrlddatlyvtlepCdmCagaivq 91 +++a aHaE a + ++ ++ +t yv pC Ca ++q tr|Q6DIS6|Q6DIS6_XENTR 91 DEHASAHAEDAFFTSVLPQFLTSGSVTVTCYVSSSPCVNCAASVAQ 136 458999***9999999999999999***************987776 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (138 nodes) Target sequences: 24182 (11782085 residues searched) Passed MSV filter: 665 (0.0274998); expected 483.6 (0.02) Passed bias filter: 444 (0.0183608); expected 483.6 (0.02) Passed Vit filter: 23 (0.000951121); expected 24.2 (0.001) Passed Fwd filter: 5 (0.000206765); expected 0.2 (1e-05) Initial search space (Z): 24182 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.14u 0.01s 00:00:00.15 Elapsed: 00:00:00.08 # Mc/sec: 20324.10 // [ok]