# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/MafB19-deam.hmm.txt
# target sequence database: proteomes/Xenopus_tropicalis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MafB19-deam [M=138]
Accession: PF14437.5
Description: MafB19-like deaminase
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.3e-21 77.2 0.1 1.6e-21 77.0 0.1 1.1 1 sp|Q0P4H0|ADAT2_XENTR tRNA-specific adenosine deaminase 2 O
2.4e-15 56.9 0.1 2.9e-15 56.6 0.1 1.1 1 tr|F6UJZ5|F6UJZ5_XENTR dCMP deaminase OS=Xenopus tropicalis
1.3e-13 51.3 0.3 2.2e-06 27.9 0.1 2.7 2 tr|F6SQI7|F6SQI7_XENTR Cytidine and dCMP deaminase domain-co
2.9e-08 34.0 0.7 8.8e-06 25.9 0.6 2.2 2 tr|F6UTI9|F6UTI9_XENTR Adenosine deaminase, tRNA-specific 3
------ inclusion threshold ------
0.095 12.9 0.0 0.15 12.2 0.0 1.3 1 tr|Q6DIS6|Q6DIS6_XENTR Apolipoprotein B mRNA-editing enzyme,
Domain annotation for each sequence (and alignments):
>> sp|Q0P4H0|ADAT2_XENTR tRNA-specific adenosine deaminase 2 OS=Xenopus tropicalis OX=8364 GN=adat2 PE=2 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 77.0 0.1 3.2e-25 1.6e-21 3 111 .. 5 122 .. 3 156 .. 0.85
Alignments for each domain:
== domain 1 score: 77.0 bits; conditional E-value: 3.2e-25
MafB19-deam 3 kekafrkalaevekatkikedkigavivkdkkviargsnekelnakataHaEiaalqqA...akklkskrl...ddatlyvtlepCdm 84
+++++ka +++++a++ +e+++g++ v d++v+++g ne + ++at HaE+ a+ q ++k+++k ++ +lyvt+epC m
sp|Q0P4H0|ADAT2_XENTR 5 IQNWMHKAFQMAQDALNNGEVPVGCLMVYDNQVVGKGRNEVNETKNATRHAEMVAIDQVldwCEKNSKKSRdvfENIVLYVTVEPCIM 92
589******************************************************97444677777654222689*********** PP
MafB19-deam 85 Cagaivqaglkklvygagnpks...lnkLk 111
Caga+ +++ +vyg+ n+ + ++L+
sp|Q0P4H0|ADAT2_XENTR 93 CAGALRLLKIPLVVYGCRNERFggcGSVLN 122
******************998877744444 PP
>> tr|F6UJZ5|F6UJZ5_XENTR dCMP deaminase OS=Xenopus tropicalis OX=8364 GN=dctd PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 56.6 0.1 6e-19 2.9e-15 3 105 .. 26 142 .. 24 169 .. 0.86
Alignments for each domain:
== domain 1 score: 56.6 bits; conditional E-value: 6e-19
MafB19-deam 3 kekafrkalaevekatkikedkigaviv.kdkkviargsn...................ekelnakataHaEiaalqqAakklkskr 69
+ ++f+ ++++ +++k + ++ga iv ++k++++g+n + +++ HaE +a++ +++
tr|F6UJZ5|F6UJZ5_XENTR 26 WCEYFMAVAFLAAQRSKDPNSQVGACIVnSENKIVGIGYNgmpngchddvlpwartaedRLDTKYPYVCHAELNAIMNK--NTAD-- 108
7789**************9****99666589*************************9876777777899********75..4444.. PP
MafB19-deam 70 lddatlyvtlepCdmCagaivqaglkklvygagnpk 105
+++t+yv l pC+ Ca++++qag+k++++ ++ k
tr|F6UJZ5|F6UJZ5_XENTR 109 VKGCTMYVALFPCNECAKLVIQAGIKEVIFMSD--K 142
59***************************9887..3 PP
>> tr|F6SQI7|F6SQI7_XENTR Cytidine and dCMP deaminase domain-containing 1 OS=Xenopus tropicalis OX=8364 GN=cdadc1 PE=4
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 27.9 0.1 4.6e-10 2.2e-06 57 107 .. 95 145 .. 58 179 .. 0.70
2 ! 20.5 0.0 8.6e-08 0.00042 48 102 .. 384 436 .. 325 466 .. 0.74
Alignments for each domain:
== domain 1 score: 27.9 bits; conditional E-value: 4.6e-10
MafB19-deam 57 alqqAakklkskrlddatlyvtlepCdmCagaivqaglkklvygagnpks.l 107
a q A+ k +sk l+d+ ly ++pC++C+++iv+ag+ ++ y ++p+ l
tr|F6SQI7|F6SQI7_XENTR 95 AGQIAVIKHGSK-LKDCDLYFSRKPCSVCLKMIVNAGVNRISYWPSDPEMsL 145
444455555555.9****************************9999888763 PP
== domain 2 score: 20.5 bits; conditional E-value: 8.6e-08
MafB19-deam 48 kataHaEiaalqqAakklkskrlddatlyvtlepCdmCagaivqaglkklvygag 102
HaE +a+ ++ + ++++++vt+ pCd C +i ag++++ g
tr|F6SQI7|F6SQI7_XENTR 384 RYIIHAEQNAITFRCNEINPE--EKTMIFVTKCPCDECVPLIKGAGIQQIYAGDV 436
4567********999999998..9*************************987754 PP
>> tr|F6UTI9|F6UTI9_XENTR Adenosine deaminase, tRNA-specific 3 OS=Xenopus tropicalis OX=8364 GN=adat3 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 5.8 0.0 0.003 14 6 62 .. 163 221 .. 160 230 .. 0.79
2 ! 25.9 0.6 1.8e-09 8.8e-06 75 128 .. 277 339 .. 271 342 .. 0.80
Alignments for each domain:
== domain 1 score: 5.8 bits; conditional E-value: 0.003
MafB19-deam 6 afrkalaevekatkikedkigaviv..kdkkviargsnekelnakataHaEiaalqqAa 62
++ a++ +++ +++ +gav+v +++v+a+ s +++ + ++ Ha + a+ a
tr|F6UTI9|F6UTI9_XENTR 163 YMGTAVEAARASQARGGKGVGAVVVdpRNGEVLAISSDRTDEDGGPLLHACMVAIDMVA 221
566667777777777788899988866899********************999986544 PP
== domain 2 score: 25.9 bits; conditional E-value: 1.8e-09
MafB19-deam 75 lyvtlepCdmCagaivqaglkklvygagnpks....lnkLkvk.ekngrvelv....eddcke 128
+yvt+epC mCa a+ +++ ++ yg++ p + +L+ n+r+++ ed+c++
tr|F6UTI9|F6UTI9_XENTR 277 IYVTREPCVMCAMALLHSRIFSVYYGCATPGGalgtCYRLHCGpGLNHRFQVYrgimEDECQK 339
9***************************88878777666666424677777777777777765 PP
>> tr|Q6DIS6|Q6DIS6_XENTR Apolipoprotein B mRNA-editing enzyme, catalytic polypeptide-like 2 OS=Xenopus tropicalis OX=8
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.2 0.0 3.1e-05 0.15 46 91 .. 91 136 .. 53 147 .. 0.85
Alignments for each domain:
== domain 1 score: 12.2 bits; conditional E-value: 3.1e-05
MafB19-deam 46 nakataHaEiaalqqAakklkskrlddatlyvtlepCdmCagaivq 91
+++a aHaE a + ++ ++ +t yv pC Ca ++q
tr|Q6DIS6|Q6DIS6_XENTR 91 DEHASAHAEDAFFTSVLPQFLTSGSVTVTCYVSSSPCVNCAASVAQ 136
458999***9999999999999999***************987776 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (138 nodes)
Target sequences: 24182 (11782085 residues searched)
Passed MSV filter: 665 (0.0274998); expected 483.6 (0.02)
Passed bias filter: 444 (0.0183608); expected 483.6 (0.02)
Passed Vit filter: 23 (0.000951121); expected 24.2 (0.001)
Passed Fwd filter: 5 (0.000206765); expected 0.2 (1e-05)
Initial search space (Z): 24182 [actual number of targets]
Domain search space (domZ): 5 [number of targets reported over threshold]
# CPU time: 0.14u 0.01s 00:00:00.15 Elapsed: 00:00:00.08
# Mc/sec: 20324.10
//
[ok]