# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/Met_10.hmm.txt
# target sequence database: proteomes/Ciona_savignyi.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Met_10 [M=199]
Accession: PF02475.15
Description: Met-10+ like-protein
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.2e-61 206.5 0.1 4.6e-61 205.4 0.1 1.5 2 tr|H2Y5Z4|H2Y5Z4_CIOSA tRNA (guanine(37)-N1)-methyltransfera
6.2e-36 123.4 0.0 8.7e-36 122.9 0.0 1.2 1 tr|H2Y5Z0|H2Y5Z0_CIOSA Uncharacterized protein OS=Ciona savi
1e-06 28.0 0.0 6.5e-06 25.4 0.0 2.0 2 tr|H2ZLY0|H2ZLY0_CIOSA tRNA (guanine(26)-N(2))-dimethyltrans
4.1e-05 22.8 0.0 6.9e-05 22.1 0.0 1.3 1 tr|H2ZN24|H2ZN24_CIOSA Uncharacterized protein OS=Ciona savi
0.00014 21.1 0.0 0.00028 20.1 0.0 1.5 2 tr|H2ZQD2|H2ZQD2_CIOSA Uncharacterized protein OS=Ciona savi
0.0085 15.2 0.0 0.014 14.5 0.0 1.3 1 tr|H2YHG7|H2YHG7_CIOSA Uncharacterized protein OS=Ciona savi
Domain annotation for each sequence (and alignments):
>> tr|H2Y5Z4|H2Y5Z4_CIOSA tRNA (guanine(37)-N1)-methyltransferase OS=Ciona savignyi OX=51511 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -3.8 0.0 2.9 5.7e+03 18 53 .. 58 93 .. 55 110 .. 0.77
2 ! 205.4 0.1 2.4e-64 4.6e-61 2 186 .. 154 346 .. 153 358 .. 0.96
Alignments for each domain:
== domain 1 score: -3.8 bits; conditional E-value: 2.9
SSHHHHHHHHHHHHHSS-SCEEEE-S-SBTTTTB-- CS
Met_10 18 lkeykkvigevildktkvktvlrkvsevegefRtfe 53
lk+++k+++ +++ t k v++ +++ ge R +
tr|H2Y5Z4|H2Y5Z4_CIOSA 58 LKNFRKMMKSKLANLTINKKVIDPPTNLVGEGRSRG 93
678888888888888888888888888877777654 PP
== domain 2 score: 205.4 bits; conditional E-value: 2.4e-64
EEEEETTEEEEEB-TTSSHHHHHHHHHHHHHS.S-SCEEEE-S-SBTTTTB--EEEEEES-.SEEEEEETTEEEEEETTTS---GGG CS
Met_10 2 kfeiiGdvvilnlreelkeykkvigevildkt.kvktvlrkvsevegefRtfelevlaGsdstetihkEngcrfklDvskvyfsskl 87
+f+++G+++++nlr++ +yk++ig+v+ldk ktv++k+++++ efR+f++ev+aG+++++t E+g +f++D+skv+++s+l
tr|H2Y5Z4|H2Y5Z4_CIOSA 154 GFSQVGHILHVNLRDHQLPYKQIIGQVLLDKIpTAKTVVNKHQNIDNEFRNFQMEVIAGDNNLVTRIIEHGRKFEFDFSKVFWNSRL 240
799*****************************9****************************************************** PP
HHHHHHHHTT--TT-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEES-GGG---TT-EE.... CS
Met_10 88 eaErerlaklveegevVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvekvvkpileDgrevireqlad.... 170
++E++r+ +l+ + +V dvfAG+Gpfaipiak k+ v+a+dlnP+s+k+l +n+klNk e v+ ++ Dgr++ir++l +
tr|H2Y5Z4|H2Y5Z4_CIOSA 241 STEHQRITHLIPRDATVFDVFAGVGPFAIPIAK--KGCLVYANDLNPDSYKWLVHNVKLNKTE--VECFNCDGRDFIRDNLRNyilt 323
*********************************..**************************87..778**********99999**** PP
.......EEEE--TTTGGGGHHH CS
Met_10 171 .......rvvmnlpksaieFldk 186
+vvmnlp+ a+eFld
tr|H2Y5Z4|H2Y5Z4_CIOSA 324 sktfhqvHVVMNLPAIAVEFLDV 346
*********************96 PP
>> tr|H2Y5Z0|H2Y5Z0_CIOSA Uncharacterized protein OS=Ciona savignyi OX=51511 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 122.9 0.0 4.5e-39 8.7e-36 2 194 .. 29 224 .. 28 233 .. 0.85
Alignments for each domain:
== domain 1 score: 122.9 bits; conditional E-value: 4.5e-39
EEEEETTEEEEEB-TTSSHHHHHH.....HHHHHHHSS-SCEEEE-S-SBTTTTB--EEEEEES-.SEEEEEETTEEEEEETTTS-- CS
Met_10 2 kfeiiGdvvilnlreelkeykkvi.....gevildktkvktvlrkvsevegefRtfelevlaGsdstetihkEngcrfklDvskvyf 83
++e+ Gd+++l + l e+ k++ e +++ + k + ++ + +R +++ +l G+d + h +n ++++++v+k +f
tr|H2Y5Z0|H2Y5Z0_CIOSA 29 RWEKHGDLIVLPCDCFLAEFWKDLpqekfWECVAEGLHGKRIAKQGRISRNGYRSPQVSMLLGED-GWVTHVDNKIKYNFEVTKCMF 114
6888889999888888888755541111145666777778877776666999*************.8999***************** PP
-GGGHHHHHHHHTT--TT-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEES-GGG---TT-EE CS
Met_10 84 sskleaErerlaklveegevVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvekvvkpileDgrevireqlad 170
s++++E+ r+akl + gevVvd+fAGiG+f++p+ +++ka++v a + nP++v l++ni+ Nkv+ + k + +D+r+v ++ +a+
tr|H2Y5Z0|H2Y5Z0_CIOSA 115 ASGNITEKIRMAKL-NAGEVVVDLFAGIGYFTLPLLVHAKAEFVHACEWNPDAVDALTRNIHDNKVHLKCKIYFGDNRTVCPHGVAN 200
***********986.89********************************************************************** PP
EEEE--TTTGGGGHHHHHHHEEEE CS
Met_10 171 rvvmnlpksaieFldkvlaalkdg 194
rv+++l+ +a+ ++++alk
tr|H2Y5Z0|H2Y5Z0_CIOSA 201 RVILGLIPTAQVSYATACKALKPT 224
******999986666666666544 PP
>> tr|H2ZLY0|H2ZLY0_CIOSA tRNA (guanine(26)-N(2))-dimethyltransferase OS=Ciona savignyi OX=51511 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 25.4 0.0 3.4e-09 6.5e-06 101 198 .. 90 193 .. 84 194 .. 0.82
2 ? -0.3 0.0 0.26 5e+02 39 79 .. 476 516 .. 449 524 .. 0.82
Alignments for each domain:
== domain 1 score: 25.4 bits; conditional E-value: 3.4e-09
T-EEEETT-TTTCCHHHCCHHT.TSSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEES-GGG---.....TT-EEEEEE--TTTGG CS
Met_10 101 gevVvdvfAGiGpfaipiakys.kakrvlaidlnPesvkylkeniklNkvekvvkpileDgrevir.....eqladrvvmnlpksai 181
g ++++ + G ++ ak k+++a+dl ++++++k+ni N+v +vv++ ++D+ +++ ++ +d + ++ sa
tr|H2ZLY0|H2ZLY0_CIOSA 90 GVRILEALSATGLRSVRFAKELpGVKQIVANDLSEDAFHLIKQNIDHNNVCDVVEANQGDATTYMYinrgkSKEFDVIDIDPYGSAA 176
555666666667777777764314578***********************************9986667767778888888899*** PP
GGHHHHHHHEEEEEEEE CS
Met_10 182 eFldkvlaalkdggvih 198
Fld++++a+k gg+ +
tr|H2ZLY0|H2ZLY0_CIOSA 177 CFLDSAVQAVKPGGLLC 193
***********999887 PP
== domain 2 score: -0.3 bits; conditional E-value: 0.26
EEE-S-SBTTTTB--EEEEEES-.SEEEEEETTEEEEEETT CS
Met_10 39 lrkvsevegefRtfelevlaGsdstetihkEngcrfklDvs 79
+ vs+v+g +R ++l G++s k+ g+++ lD++
tr|H2ZLY0|H2ZLY0_CIOSA 476 ADSVSKVKGIVRFPNLPANWGPKSRAKSSKDGGIELSLDLK 516
4678999**************99999999999999999986 PP
>> tr|H2ZN24|H2ZN24_CIOSA Uncharacterized protein OS=Ciona savignyi OX=51511 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 22.1 0.0 3.6e-08 6.9e-05 101 189 .. 99 186 .. 78 198 .. 0.87
Alignments for each domain:
== domain 1 score: 22.1 bits; conditional E-value: 3.6e-08
T-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEES-GGG---TT-EEEEEE--TTTGGGGHHH. CS
Met_10 101 gevVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvekvvkpileDgrevireqladrvvmnlpksaieFldk. 186
+++vd f G G +i a +rv+aid++P + ++n + ve++++ i++ +++++ +ad + + p e++++
tr|H2ZN24|H2ZN24_CIOSA 99 CDIIVDAFCGSGGNSIQFAF--TCERVIAIDIDPVKLENARHNAAIYGVEDRIEFICGSFFDLAPTLKADVIFLSPPWGGPEYIHCd 183
589****************8..7788********************************************99999999999999986 PP
HHH CS
Met_10 187 vla 189
+++
tr|H2ZN24|H2ZN24_CIOSA 184 TYS 186
444 PP
>> tr|H2ZQD2|H2ZQD2_CIOSA Uncharacterized protein OS=Ciona savignyi OX=51511 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 20.1 0.0 1.4e-07 0.00028 101 180 .. 49 133 .. 41 167 .. 0.84
2 ? -2.2 0.0 0.99 1.9e+03 59 84 .. 187 212 .. 155 214 .] 0.60
Alignments for each domain:
== domain 1 score: 20.1 bits; conditional E-value: 1.4e-07
T-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEES-G......GG---TT-EEEEEE--TTTG CS
Met_10 101 gevVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvekvvkpileDg......revireqladrvvmnlpksa 180
g+ V+d+ G G ++i + ++ a+ l++d++ e+ + +n + ++e++v + +D+ r+v+r++++d v+mn p +
tr|H2ZQD2|H2ZQD2_CIOSA 49 GKAVCDLGCGCGILSIGSSILG-ASYCLGVDIDKEALGIFLSNCEDYELESTVDCVHSDVvklascRNVLRKKQFDTVIMNPPFGT 133
789**************99865.6679******************************99633333367777**********88655 PP
== domain 2 score: -2.2 bits; conditional E-value: 0.99
ES-.SEEEEEETTEEEEEETTTS--- CS
Met_10 59 GsdstetihkEngcrfklDvskvyfs 84
d + hk ++ +++D+ + f+
tr|H2ZQD2|H2ZQD2_CIOSA 187 NLDASYKFHKKKSKDIEVDFIRFTFN 212
34444555666666777777766666 PP
>> tr|H2YHG7|H2YHG7_CIOSA Uncharacterized protein OS=Ciona savignyi OX=51511 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.5 0.0 7.3e-06 0.014 100 173 .. 73 144 .. 17 167 .. 0.78
Alignments for each domain:
== domain 1 score: 14.5 bits; conditional E-value: 7.3e-06
TT-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEES-GGG---TT-EEEEE CS
Met_10 100 egevVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvekvvkpileDgrevireqladrvv 173
+++vV+dv AG G ++ +a+ + a++v+ai+ + + k+ ++ N ++++v +++ ++ ++++d +v
tr|H2YHG7|H2YHG7_CIOSA 73 KDKVVLDVGAGTGILSCFCAQ-AGARKVYAIEASNIA-EQAKKVVETNGLSERVVVMQCILEDAFLPEKVDIIV 144
578*****************8.89999*****87655.557888888988888876665555554555555555 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (199 nodes)
Target sequences: 11592 (4231397 residues searched)
Passed MSV filter: 347 (0.0299344); expected 231.8 (0.02)
Passed bias filter: 258 (0.0222567); expected 231.8 (0.02)
Passed Vit filter: 23 (0.00198413); expected 11.6 (0.001)
Passed Fwd filter: 6 (0.000517598); expected 0.1 (1e-05)
Initial search space (Z): 11592 [actual number of targets]
Domain search space (domZ): 6 [number of targets reported over threshold]
# CPU time: 0.07u 0.00s 00:00:00.07 Elapsed: 00:00:00.03
# Mc/sec: 28068.27
//
[ok]