# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/Met_10.hmm.txt # target sequence database: proteomes/Natronomonas_moolapensis.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Met_10 [M=199] Accession: PF02475.15 Description: Met-10+ like-protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.6e-56 186.0 0.0 1.4e-55 185.5 0.0 1.2 1 tr|M1Y3X8|M1Y3X8_NATM8 tRNA (Guanine(37)-N(1))-methyltransfe 1.6e-48 162.5 0.0 2e-48 162.1 0.0 1.1 1 tr|M1XN99|M1XN99_NATM8 tRNA(Phe) (4-demethylwyosine(37)-C(7) 0.0023 15.0 0.0 0.0037 14.4 0.0 1.3 1 tr|M1XS10|M1XS10_NATM8 Probable rRNA methyltransferase OS=Na 0.0029 14.7 0.0 0.0044 14.1 0.0 1.2 1 tr|M1XL08|M1XL08_NATM8 Probable arsenite(III)-methyltransfer ------ inclusion threshold ------ 0.014 12.4 0.0 0.023 11.8 0.0 1.3 1 tr|M1Y5Q2|M1Y5Q2_NATM8 Probable cobalt-precorrin-6B C(15)-me 0.024 11.7 0.0 0.05 10.7 0.0 1.5 1 tr|M1XP07|M1XP07_NATM8 Probable S-adenosylmethionine-depende Domain annotation for each sequence (and alignments): >> tr|M1Y3X8|M1Y3X8_NATM8 tRNA (Guanine(37)-N(1))-methyltransferase OS=Natronomonas moolapensis (strain DSM 18674 / JCM # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 185.5 0.0 3e-58 1.4e-55 2 199 .] 81 275 .. 80 275 .. 0.97 Alignments for each domain: == domain 1 score: 185.5 bits; conditional E-value: 3e-58 EEEEETTEEEEEB-TTSSHHHHHHHHHHHHHS.S-SCEEEE-S-SBTTTTB--EEEEEES-.SEEEEEETTEEEEEETTTS---GGG CS Met_10 2 kfeiiGdvvilnlreelkeykkvigevildkt.kvktvlrkvsevegefRtfelevlaGsdstetihkEngcrfklDvskvyfsskl 87 ++e+ Gd++i++ +++ + ++ i+e++l+ + +tv+++ s +ege+R+++ vl G++ tet+h+E+gc+f+lD++++yfs++l tr|M1Y3X8|M1Y3X8_NATM8 81 SYERLGDIAIVDEDDDER--ARRIAEAVLESDlPARTVVNRASPIEGELRVRQWDVLGGDG-TETVHREHGCEFELDIAEMYFSPRL 164 699*******98776655..599************************************99.************************* PP HHHHHHHHTT--TT-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEES-GGG---.TT-EEEEE CS Met_10 88 eaErerlaklveegevVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvekvvkpileDgrevir.eqladrvv 173 ++Er+r++ ve +e+V d+fAG+Gpf +p+ak ++ + +++dln ++v+yl++n ++N v+++v +i++D+r+v+ ++ adr+v tr|M1Y3X8|M1Y3X8_NATM8 165 ATERHRVVGGVERDERVFDMFAGVGPFIVPAAK--RGAECVGVDLNEAAVEYLRRNAERNGVSDRVIAINADVRDVTGyDDWADRIV 249 *********************************..99999*************************************999******* PP E--TTTGGGGHHHHHHHEEEEEEEEE CS Met_10 174 mnlpksaieFldkvlaalkdggvihy 199 mnlp+sa Fld++++ + + + hy tr|M1Y3X8|M1Y3X8_NATM8 250 MNLPHSADGFLDTAVELAGEDCLLHY 275 ****************9999999998 PP >> tr|M1XN99|M1XN99_NATM8 tRNA(Phe) (4-demethylwyosine(37)-C(7)) aminocarboxypropyltransferase OS=Natronomonas moolapen # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 162.1 0.0 4.5e-51 2e-48 2 198 .. 91 288 .. 90 289 .. 0.92 Alignments for each domain: == domain 1 score: 162.1 bits; conditional E-value: 4.5e-51 EEEEETTEEEEEB......-TTSSHHHHHHHHHHHHHS.S-SCEEEE-S-SBTTTTB--EEEEEES-.SEEEEEETTEEEEEETTTS CS Met_10 2 kfeiiGdvvilnl......reelkeykkvigevildkt.kvktvlrkvsevegefRtfelevlaGsdstetihkEngcrfklDvskv 81 ++++iGdvv+++ r+ + +++ige++l+++ + tvl + + +g+ R + v+aGs++tet+h+E+g+++ lD+s+ tr|M1XN99|M1XN99_NATM8 91 SWAVIGDVVLVDFgdvsaaRTLDRGSRETIGEALLEVHgDADTVLARGGI-SGTRRDPAGAVVAGSGDTETVHTEHGIEYALDLSET 176 799*******986222211333445899**********999**9998776.************************************ PP ---GGGHHHHHHHHTT--TT-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEES-GGG---TT- CS Met_10 82 yfsskleaErerlaklveegevVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvekvvkpileDgrevireql 168 +fs++++aEr+r+ +v+ ge+V d+fAGiG+f++p+a+ + v a +++P++ + l en ++N v+ +v+++l+D+r v e++ tr|M1XN99|M1XN99_NATM8 177 MFSPGNKAERARMGDVVSAGERVFDMFAGIGYFSLPMAR--AEASVTAAEIDPTAHRRLVENARRNGVAARVEAVLGDCRSV--ETA 259 **************************************9..6667*************************************..69* PP EEEEEE--TTTGGGGHHHHHHHEEEEEEEE CS Met_10 169 adrvvmnlpksaieFldkvlaalkdggvih 198 adrv+m++ a+e+ld++l+a+ ggv+h tr|M1XN99|M1XN99_NATM8 260 ADRVLMGYY-DAHEYLDSALEAVVSGGVVH 288 ********8.8*****************99 PP >> tr|M1XS10|M1XS10_NATM8 Probable rRNA methyltransferase OS=Natronomonas moolapensis (strain DSM 18674 / JCM 14361 / 8 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.4 0.0 8.2e-06 0.0037 100 177 .. 54 131 .. 43 141 .. 0.87 Alignments for each domain: == domain 1 score: 14.4 bits; conditional E-value: 8.2e-06 TT-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEES-GGG---.TT-EEEEEE--T CS Met_10 100 egevVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvekvvkpileDgrevir.eqladrvvmnlp 177 eg +V+d+ G G +a+ +a ++ v+++d++P+ +en ++ v+ + +D+ ++ + v+mn p tr|M1XS10|M1XS10_NATM8 54 EGRTVLDLGCGTGMLALGAAL-RGPELVVGVDIDPAPLSTARENERRVGAMTDVSWVRGDVTDLPLvPGGDATVLMNPP 131 7899****************6.77899*********************9999*********999874444446667765 PP >> tr|M1XL08|M1XL08_NATM8 Probable arsenite(III)-methyltransferase OS=Natronomonas moolapensis (strain DSM 18674 / JCM # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.1 0.0 9.8e-06 0.0044 96 152 .. 91 148 .. 83 192 .. 0.82 Alignments for each domain: == domain 1 score: 14.1 bits; conditional E-value: 9.8e-06 TT--TT-EEEETT-TTTCCH.HHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTC CS Met_10 96 klveegevVvdvfAGiGpfa.ipiakyskakrvlaidlnPesvkylkeniklNkvekv 152 + + ge V+d+ G G+ +++ ++ rv+++d+ Pe +k + n N e+v tr|M1XL08|M1XL08_NATM8 91 ASLNAGEAVLDLGSGAGFDCfLAAQEVGETGRVIGVDMTPEMIKKARANASQNGAENV 148 55789************855156667899************************98875 PP >> tr|M1Y5Q2|M1Y5Q2_NATM8 Probable cobalt-precorrin-6B C(15)-methyltransferase (decarboxylating) OS=Natronomonas moolap # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.8 0.0 5.2e-05 0.023 110 177 .. 41 127 .. 29 150 .. 0.82 Alignments for each domain: == domain 1 score: 11.8 bits; conditional E-value: 5.2e-05 TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEES-GGG---TT-EE.......................EEE CS Met_10 110 GiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvekvvkpileDgrevireqlad.......................rvv 173 G +i +a+ a rv ai+ Pe + ++n++ N +e v+ i++++ e + ++ ad rvv tr|M1Y5Q2|M1Y5Q2_NATM8 41 CTGAVTIEAAR--LAGRVTAIERKPERLEATRKNLAANGIEG-VELIEGEAPEAL-PDDADalflggsrnyadvldhaaetgvdRVV 123 55777888888..8899***********************98.579999999998.6667768888888888899999999999999 PP E--T CS Met_10 174 mnlp 177 mn+ tr|M1Y5Q2|M1Y5Q2_NATM8 124 MNVS 127 9875 PP >> tr|M1XP07|M1XP07_NATM8 Probable S-adenosylmethionine-dependent methyltransferase (Homolog to 24-sterol C-methyltrans # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.7 0.0 0.00011 0.05 88 138 .. 25 76 .. 19 88 .. 0.90 Alignments for each domain: == domain 1 score: 10.7 bits; conditional E-value: 0.00011 HHHHHHHHTT.--TT-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHH CS Met_10 88 eaErerlakl.veegevVvdvfAGiGpfaipiakyskakrvlaidlnPesvk 138 ++ ++ la++ ve ge+V+d+ G G+ ++ ++a rv++ d Pe v+ tr|M1XP07|M1XP07_NATM8 25 HTAKHALARMpVEAGETVLDLGCGSGYAGRALREATDAARVYGLDGAPEMVR 76 56677899999***********************9************99775 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (199 nodes) Target sequences: 2723 (809592 residues searched) Passed MSV filter: 63 (0.0231362); expected 54.5 (0.02) Passed bias filter: 54 (0.0198311); expected 54.5 (0.02) Passed Vit filter: 14 (0.00514139); expected 2.7 (0.001) Passed Fwd filter: 6 (0.00220345); expected 0.0 (1e-05) Initial search space (Z): 2723 [actual number of targets] Domain search space (domZ): 6 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 16110.88 // [ok]