# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/Met_10.hmm.txt # target sequence database: proteomes/Pseudomonas_aeruginosa.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Met_10 [M=199] Accession: PF02475.15 Description: Met-10+ like-protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.3e-11 40.7 0.0 9.1e-11 40.2 0.0 1.2 1 tr|Q9I6D9|Q9I6D9_PSEAE Uncharacterized protein OS=Pseudomona 0.0022 16.1 0.1 0.0043 15.2 0.1 1.4 1 tr|Q9HY01|Q9HY01_PSEAE S-(hydroxymethyl)glutathione dehydrog 0.0062 14.7 0.0 0.009 14.1 0.0 1.2 1 sp|Q9I347|PRMB_PSEAE 50S ribosomal protein L3 glutamine me 0.0094 14.1 0.0 0.016 13.3 0.0 1.3 1 sp|Q9I525|RLMD_PSEAE 23S rRNA (uracil(1939)-C(5))-methyltr ------ inclusion threshold ------ 0.014 13.5 0.0 0.021 12.9 0.0 1.2 1 tr|Q9I1T6|Q9I1T6_PSEAE Uncharacterized protein OS=Pseudomona Domain annotation for each sequence (and alignments): >> tr|Q9I6D9|Q9I6D9_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 40.2 0.0 8.2e-14 9.1e-11 5 169 .. 120 288 .. 118 344 .. 0.86 Alignments for each domain: == domain 1 score: 40.2 bits; conditional E-value: 8.2e-14 EETTEEEEEB-TTSSHHHH.HHHHHHHHHSS-SCEEEE-S-S..BTTTTB--EEEEEES-.SEEEEEETTEEEEEET...TTS---G CS Met_10 5 iiGdvvilnlreelkeykk.vigevildktkvktvlrkvsev..egefRtfelevlaGsdstetihkEngcrfklDv...skvyfss 85 + Gdv++++l + ++e +k ++ ++l++ k +vl k+++ ++e ++ + +G+ + +Eng++f+ v +k + tr|Q9I6D9|Q9I6D9_PSEAE 120 RFGDVLVVQLASAAMELRKdEVLAALLQVLKPAAVLWKNDSSarDAEGLERYVANAYGEVPEWVALEENGVKFEAPVlagQKTGWFY 206 57*************976527999999**999999988887545666677788899***999***********966533389***** PP GGHHHHHHHHTT--TT-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEES-GGG---TT-E CS Met_10 86 kleaErerlaklveegevVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvekvvkpileDgrevireqla 169 r+rla v+ g++V+d+f iG + i +a ++ ++v+ +d + +++n +lN v+++v +++D+ e +re +a tr|Q9I6D9|Q9I6D9_PSEAE 207 DHRMNRARLAPYVQ-GKRVLDLFSYIGGWGIQAAAFGA-SEVMCVDASAFALDGVERNAALNGVAEKVACVEGDVFEALRELKA 288 **********9986.99*****************9875.56**********************************998884332 PP >> tr|Q9HY01|Q9HY01_PSEAE S-(hydroxymethyl)glutathione dehydrogenase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.2 0.1 3.9e-06 0.0043 98 137 .. 185 225 .. 179 231 .. 0.81 Alignments for each domain: == domain 1 score: 15.2 bits; conditional E-value: 3.9e-06 --TT-EEEET.T-TTTCCHHHCCHHTTSSEEEEEES-HHHH CS Met_10 98 veegevVvdv.fAGiGpfaipiakyskakrvlaidlnPesv 137 veeg +V + GiG ai ak++ka r++a+d+nP + tr|Q9HY01|Q9HY01_PSEAE 185 VEEGATVAIFgLGGIGLAAIIGAKMAKAARIIAVDINPGKF 225 6677666433278*************************766 PP >> sp|Q9I347|PRMB_PSEAE 50S ribosomal protein L3 glutamine methyltransferase OS=Pseudomonas aeruginosa (strain ATCC 156 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.1 0.0 8.1e-06 0.009 103 191 .. 128 217 .. 115 226 .. 0.88 Alignments for each domain: == domain 1 score: 14.1 bits; conditional E-value: 8.1e-06 EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEES-GGG---TT-EEEEEE--TT.TGGGGHHHHHHH CS Met_10 103 vVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvekvvkpileDgrevireqladrvvmnlpk.saieFldkvlaa 190 +++d+ G G i++a ++ +v+ dl ++ + + ni++ ++ ++v ++++Dg ++ q +d +v n p+ a++F d ++ sp|Q9I347|PRMB_PSEAE 128 RILDLCTGSGCIGIACAYAFEQAEVVLADLSFDALEVANVNIERHDLGERVYTVQGDGFAGLPGQRFDLIVSNPPYvDAEDFADMPAEF 216 689**************98899999999******************************99999********998862578887776665 PP E CS Met_10 191 l 191 + sp|Q9I347|PRMB_PSEAE 217 H 217 5 PP >> sp|Q9I525|RLMD_PSEAE 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD OS=Pseudomonas aeruginosa (strain ATCC 1569 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.3 0.0 1.4e-05 0.016 101 131 .. 305 333 .. 294 351 .. 0.89 Alignments for each domain: == domain 1 score: 13.3 bits; conditional E-value: 1.4e-05 T-EEEETT-TTTCCHHHCCHHTTSSEEEEEE CS Met_10 101 gevVvdvfAGiGpfaipiakyskakrvlaid 131 +e+V+d+f G G f++p+a+ + rv++++ sp|Q9I525|RLMD_PSEAE 305 DERVLDLFCGLGNFSLPLAR--RVARVVGVE 333 799****************9..888888876 PP >> tr|Q9I1T6|Q9I1T6_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.9 0.0 1.9e-05 0.021 106 151 .. 142 187 .. 136 207 .. 0.91 Alignments for each domain: == domain 1 score: 12.9 bits; conditional E-value: 1.9e-05 ETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TT CS Met_10 106 dvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvek 151 d+ G Gp ai ia + + +v + d+nP++ + + n +l v + tr|Q9I1T6|Q9I1T6_PSEAE 142 DIGCGAGPGAIRIAMACPDAEVHGLDINPAALDLARVNAALAGVGN 187 67789**********9***********************9988876 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (199 nodes) Target sequences: 5563 (1857172 residues searched) Passed MSV filter: 117 (0.0210318); expected 111.3 (0.02) Passed bias filter: 113 (0.0203128); expected 111.3 (0.02) Passed Vit filter: 17 (0.00305591); expected 5.6 (0.001) Passed Fwd filter: 5 (0.000898796); expected 0.1 (1e-05) Initial search space (Z): 5563 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.04u 0.00s 00:00:00.04 Elapsed: 00:00:00.02 # Mc/sec: 18478.86 // [ok]