# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/Met_10.hmm.txt
# target sequence database: proteomes/Pseudomonas_aeruginosa.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Met_10 [M=199]
Accession: PF02475.15
Description: Met-10+ like-protein
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.3e-11 40.7 0.0 9.1e-11 40.2 0.0 1.2 1 tr|Q9I6D9|Q9I6D9_PSEAE Uncharacterized protein OS=Pseudomona
0.0022 16.1 0.1 0.0043 15.2 0.1 1.4 1 tr|Q9HY01|Q9HY01_PSEAE S-(hydroxymethyl)glutathione dehydrog
0.0062 14.7 0.0 0.009 14.1 0.0 1.2 1 sp|Q9I347|PRMB_PSEAE 50S ribosomal protein L3 glutamine me
0.0094 14.1 0.0 0.016 13.3 0.0 1.3 1 sp|Q9I525|RLMD_PSEAE 23S rRNA (uracil(1939)-C(5))-methyltr
------ inclusion threshold ------
0.014 13.5 0.0 0.021 12.9 0.0 1.2 1 tr|Q9I1T6|Q9I1T6_PSEAE Uncharacterized protein OS=Pseudomona
Domain annotation for each sequence (and alignments):
>> tr|Q9I6D9|Q9I6D9_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 40.2 0.0 8.2e-14 9.1e-11 5 169 .. 120 288 .. 118 344 .. 0.86
Alignments for each domain:
== domain 1 score: 40.2 bits; conditional E-value: 8.2e-14
EETTEEEEEB-TTSSHHHH.HHHHHHHHHSS-SCEEEE-S-S..BTTTTB--EEEEEES-.SEEEEEETTEEEEEET...TTS---G CS
Met_10 5 iiGdvvilnlreelkeykk.vigevildktkvktvlrkvsev..egefRtfelevlaGsdstetihkEngcrfklDv...skvyfss 85
+ Gdv++++l + ++e +k ++ ++l++ k +vl k+++ ++e ++ + +G+ + +Eng++f+ v +k +
tr|Q9I6D9|Q9I6D9_PSEAE 120 RFGDVLVVQLASAAMELRKdEVLAALLQVLKPAAVLWKNDSSarDAEGLERYVANAYGEVPEWVALEENGVKFEAPVlagQKTGWFY 206
57*************976527999999**999999988887545666677788899***999***********966533389***** PP
GGHHHHHHHHTT--TT-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEES-GGG---TT-E CS
Met_10 86 kleaErerlaklveegevVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvekvvkpileDgrevireqla 169
r+rla v+ g++V+d+f iG + i +a ++ ++v+ +d + +++n +lN v+++v +++D+ e +re +a
tr|Q9I6D9|Q9I6D9_PSEAE 207 DHRMNRARLAPYVQ-GKRVLDLFSYIGGWGIQAAAFGA-SEVMCVDASAFALDGVERNAALNGVAEKVACVEGDVFEALRELKA 288
**********9986.99*****************9875.56**********************************998884332 PP
>> tr|Q9HY01|Q9HY01_PSEAE S-(hydroxymethyl)glutathione dehydrogenase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.2 0.1 3.9e-06 0.0043 98 137 .. 185 225 .. 179 231 .. 0.81
Alignments for each domain:
== domain 1 score: 15.2 bits; conditional E-value: 3.9e-06
--TT-EEEET.T-TTTCCHHHCCHHTTSSEEEEEES-HHHH CS
Met_10 98 veegevVvdv.fAGiGpfaipiakyskakrvlaidlnPesv 137
veeg +V + GiG ai ak++ka r++a+d+nP +
tr|Q9HY01|Q9HY01_PSEAE 185 VEEGATVAIFgLGGIGLAAIIGAKMAKAARIIAVDINPGKF 225
6677666433278*************************766 PP
>> sp|Q9I347|PRMB_PSEAE 50S ribosomal protein L3 glutamine methyltransferase OS=Pseudomonas aeruginosa (strain ATCC 156
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.1 0.0 8.1e-06 0.009 103 191 .. 128 217 .. 115 226 .. 0.88
Alignments for each domain:
== domain 1 score: 14.1 bits; conditional E-value: 8.1e-06
EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEES-GGG---TT-EEEEEE--TT.TGGGGHHHHHHH CS
Met_10 103 vVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvekvvkpileDgrevireqladrvvmnlpk.saieFldkvlaa 190
+++d+ G G i++a ++ +v+ dl ++ + + ni++ ++ ++v ++++Dg ++ q +d +v n p+ a++F d ++
sp|Q9I347|PRMB_PSEAE 128 RILDLCTGSGCIGIACAYAFEQAEVVLADLSFDALEVANVNIERHDLGERVYTVQGDGFAGLPGQRFDLIVSNPPYvDAEDFADMPAEF 216
689**************98899999999******************************99999********998862578887776665 PP
E CS
Met_10 191 l 191
+
sp|Q9I347|PRMB_PSEAE 217 H 217
5 PP
>> sp|Q9I525|RLMD_PSEAE 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD OS=Pseudomonas aeruginosa (strain ATCC 1569
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.3 0.0 1.4e-05 0.016 101 131 .. 305 333 .. 294 351 .. 0.89
Alignments for each domain:
== domain 1 score: 13.3 bits; conditional E-value: 1.4e-05
T-EEEETT-TTTCCHHHCCHHTTSSEEEEEE CS
Met_10 101 gevVvdvfAGiGpfaipiakyskakrvlaid 131
+e+V+d+f G G f++p+a+ + rv++++
sp|Q9I525|RLMD_PSEAE 305 DERVLDLFCGLGNFSLPLAR--RVARVVGVE 333
799****************9..888888876 PP
>> tr|Q9I1T6|Q9I1T6_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.9 0.0 1.9e-05 0.021 106 151 .. 142 187 .. 136 207 .. 0.91
Alignments for each domain:
== domain 1 score: 12.9 bits; conditional E-value: 1.9e-05
ETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TT CS
Met_10 106 dvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvek 151
d+ G Gp ai ia + + +v + d+nP++ + + n +l v +
tr|Q9I1T6|Q9I1T6_PSEAE 142 DIGCGAGPGAIRIAMACPDAEVHGLDINPAALDLARVNAALAGVGN 187
67789**********9***********************9988876 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (199 nodes)
Target sequences: 5563 (1857172 residues searched)
Passed MSV filter: 117 (0.0210318); expected 111.3 (0.02)
Passed bias filter: 113 (0.0203128); expected 111.3 (0.02)
Passed Vit filter: 17 (0.00305591); expected 5.6 (0.001)
Passed Fwd filter: 5 (0.000898796); expected 0.1 (1e-05)
Initial search space (Z): 5563 [actual number of targets]
Domain search space (domZ): 5 [number of targets reported over threshold]
# CPU time: 0.04u 0.00s 00:00:00.04 Elapsed: 00:00:00.02
# Mc/sec: 18478.86
//
[ok]