# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/Met_10.hmm.txt
# target sequence database: proteomes/Saccharomyces_cerevisiae.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Met_10 [M=199]
Accession: PF02475.15
Description: Met-10+ like-protein
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.1e-82 275.1 0.0 1.6e-82 274.6 0.0 1.2 1 sp|P38793|TRM5_YEAST tRNA (guanine(37)-N1)-methyltransferase
1.5e-09 36.3 0.0 2.8e-09 35.5 0.0 1.4 1 sp|Q04235|TYW2_YEAST tRNA wybutosine-synthesizing protein 2
7.9e-07 27.5 0.1 1.4e-06 26.7 0.1 1.4 1 sp|P15565|TRM1_YEAST tRNA (guanine(26)-N(2))-dimethyltransfe
0.00012 20.3 0.0 0.0002 19.6 0.0 1.3 1 sp|P41819|DIM1_YEAST Dimethyladenosine transferase OS=Saccha
0.0022 16.2 0.0 0.0039 15.4 0.0 1.3 1 sp|P53944|MTQ1_YEAST Mitochondrial N(5)-glutamine methyltran
0.003 15.8 0.0 0.0082 14.4 0.0 1.7 1 sp|P33753|TRM2_YEAST tRNA (uracil(54)-C(5))-methyltransferas
------ inclusion threshold ------
0.013 13.7 0.0 0.019 13.2 0.0 1.3 1 sp|Q03920|MTQ2_YEAST eRF1 methyltransferase catalytic subuni
0.021 13.0 0.0 0.035 12.3 0.0 1.3 1 sp|P38074|HMT1_YEAST Protein arginine N-methyltransferase 1
Domain annotation for each sequence (and alignments):
>> sp|P38793|TRM5_YEAST tRNA (guanine(37)-N1)-methyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 274.6 0.0 2.1e-85 1.6e-82 2 199 .] 177 436 .. 176 436 .. 0.98
Alignments for each domain:
== domain 1 score: 274.6 bits; conditional E-value: 2.1e-85
EEEEETTEEEEEB-TTSSHHHHHHHHHHHHHS.S-SCEEEE-S-SBTTTTB--EEEEEE.S-.SEEEEEETTEEEEEETTTS---GGGH CS
Met_10 2 kfeiiGdvvilnlreelkeykkvigevildkt.kvktvlrkvsevegefRtfelevlaG.sdstetihkEngcrfklDvskvyfsskle 88
+f+i+G++++lnlr+e+k+++++ig+vildk+ k+++v++kvs+++++fRtf+++v+aG sds+++++kE++c+fk+D+skvy++s+l+
sp|P38793|TRM5_YEAST 177 GFTITGHIAHLNLRTEFKPFDSLIGQVILDKNnKIECVVDKVSSIATQFRTFPMKVIAGkSDSLVVEQKESNCTFKFDFSKVYWNSRLH 265
8*******************************9**************************9999************************** PP
HHHHHHHTT.--TT-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEES-GGG---..TT-EE.... CS
Met_10 89 aErerlakl.veegevVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvekvvkpileDgrevir..eqlad.... 170
+E+erl+k+ +++g+vV+dvfAG+Gpfa+p++k k+++vla+dlnPes+kylkeni+lNkv+k+vk++++Dg+++ir +ql++
sp|P38793|TRM5_YEAST 266 TEHERLVKQyFQPGQVVCDVFAGVGPFAVPAGK--KDVIVLANDLNPESYKYLKENIALNKVAKTVKSFNMDGADFIRqsPQLLQqwiq 352
*********9***********************..******************************************97766666899* PP
..........................................EEEE--TTTGGGGHHH...HHHHEEEE..........EEEEE CS
Met_10 171 ..........................................rvvmnlpksaieFldk...vlaalkdg..........gvihy 199
++vmnlp+sai+Fl++ ++aa+++g +v+++
sp|P38793|TRM5_YEAST 353 deeggkitiplplkkrhrsqqhndqqppqprtkeliipshisHYVMNLPDSAISFLGNfrgIFAAHTKGatdtiqmpwvHVHCF 436
**********************************************************999********9999****9999998 PP
>> sp|Q04235|TYW2_YEAST tRNA wybutosine-synthesizing protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 35.5 0.0 3.8e-12 2.8e-09 81 151 .. 254 325 .. 239 346 .. 0.89
Alignments for each domain:
== domain 1 score: 35.5 bits; conditional E-value: 3.8e-12
S---GGGHHHHHHHHTT--T..T-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TT CS
Met_10 81 vyfsskleaErerlaklvee..gevVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvek 151
+fs+++++E++r+ +++ + ++ Vvd++AGiG+f+ + a++++a +lnP sv+ lk+ +k N +k
sp|Q04235|TYW2_YEAST 254 TMFSRGNIKEKKRVLTTFPDicNNDVVDLYAGIGYFTFSYLT-KGARTLFAFELNPWSVEGLKRGLKANGFNK 325
59***************98766999*************9876.57889****************999997665 PP
>> sp|P15565|TRM1_YEAST tRNA (guanine(26)-N(2))-dimethyltransferase, mitochondrial OS=Saccharomyces cerevisiae (strain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 26.7 0.1 1.8e-09 1.4e-06 124 196 .. 157 234 .. 136 292 .. 0.81
Alignments for each domain:
== domain 1 score: 26.7 bits; conditional E-value: 1.8e-09
SSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEES-GGG---TT-EE....EEEE--TT.TGGGGHHHHHHHEEEEEE CS
Met_10 124 akrvlaidlnPesvkylkeniklNkvekvvkpileDgrevireqlad....rvvmnlpk.saieFldkvlaalkdggv 196
++v+a+dl Pe+v+ +k+n++ N ve++vkp l D++ ++ +++a +v+ p+ + + F+d++++ +++gg+
sp|P15565|TRM1_YEAST 157 VREVIANDLLPEAVESIKRNVEYNSVENIVKPNLDDANVLMYRNKATnnkfHVIDLDPYgTVTPFVDAAIQSIEEGGL 234
579********************************9999887444444677666444441455688888888877765 PP
>> sp|P41819|DIM1_YEAST Dimethyladenosine transferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=55929
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 19.6 0.0 2.7e-07 0.0002 97 163 .. 53 117 .. 16 140 .. 0.88
Alignments for each domain:
== domain 1 score: 19.6 bits; conditional E-value: 2.7e-07
T--TT-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEES-GGG- CS
Met_10 97 lveegevVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvekvvkpileDgrev 163
++++ +vV++v G G +++ i +ak v+a++++P+ l++ ++ vek+++ +l+D +
sp|P41819|DIM1_YEAST 53 QIRPSDVVLEVGPGTGNLTVRILE--QAKNVVAVEMDPRMAAELTKRVRGTPVEKKLEIMLGDFMKT 117
6899******************99..9999***************************9999997655 PP
>> sp|P53944|MTQ1_YEAST Mitochondrial N(5)-glutamine methyltransferase MTQ1 OS=Saccharomyces cerevisiae (strain ATCC 20
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.4 0.0 5.1e-06 0.0039 104 150 .. 114 160 .. 106 170 .. 0.92
Alignments for each domain:
== domain 1 score: 15.4 bits; conditional E-value: 5.1e-06
EEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-T CS
Met_10 104 VvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkve 150
++d f G G a+++++ + + aid+ +++k++ken+ Nkv+
sp|P53944|MTQ1_YEAST 114 ICDTFTGTGCIALALSHGIANCTFTAIDVSTRAIKLVKENMLKNKVS 160
8***************877788899*********************8 PP
>> sp|P33753|TRM2_YEAST tRNA (uracil(54)-C(5))-methyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.4 0.0 1.1e-05 0.0082 102 152 .. 490 538 .. 483 580 .. 0.87
Alignments for each domain:
== domain 1 score: 14.4 bits; conditional E-value: 1.1e-05
-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTC CS
Met_10 102 evVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvekv 152
+ vd + G G f+i +k +v+++++ +sv + ++n k N ve+
sp|P33753|TRM2_YEAST 490 KFLVDAYCGSGLFSICSSK--GVDKVIGVEISADSVSFAEKNAKANGVENC 538
5689**************9..5556***********************985 PP
>> sp|Q03920|MTQ2_YEAST eRF1 methyltransferase catalytic subunit MTQ2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 13.2 0.0 2.4e-05 0.019 89 182 .. 30 129 .. 8 142 .. 0.74
Alignments for each domain:
== domain 1 score: 13.2 bits; conditional E-value: 2.4e-05
HHHHHHHTT-.-TT-EEEETT-TTTCCHHHCCHH....TTSSEEEEEES-HHHHHHHHHHHHHTT-TT.CEEEEES-GGG---TT-EEE CS
Met_10 89 aErerlaklv.eegevVvdvfAGiGpfaipiaky....skakrvlaidlnPesvkylkeniklNkvek.vvkpileDgrevireqladr 171
+E+ l +++ + +V+++ G G + + + ++++ la+d+nP + + + klN ++ +++i++D + ir++++d
sp|Q03920|MTQ2_YEAST 30 KEHDFLKQKFgNRLAIVCEIGSGSGIVTTFLMQNkiipQENSIHLAVDINPWALEATLDTAKLNSCKSsFLEVIQADLNSSIRNNQVDV 118
566666555413345666666666654443332111112455668********************9752789***************** PP
EEE--TTTGGG CS
Met_10 172 vvmnlpksaie 182
++ n p+ e
sp|Q03920|MTQ2_YEAST 119 LIFNPPYVPAE 129
**998876555 PP
>> sp|P38074|HMT1_YEAST Protein arginine N-methyltransferase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.3 0.0 4.6e-05 0.035 100 164 .. 58 120 .. 43 153 .. 0.83
Alignments for each domain:
== domain 1 score: 12.3 bits; conditional E-value: 4.6e-05
TT-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEES-GGG-- CS
Met_10 100 egevVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvekvvkpileDgrevi 164
++++V+dv G G +++ +ak++ k v+++d+ + +++ ke ++lN +++++ + + ++v
sp|P38074|HMT1_YEAST 58 KDKIVLDVGCGTGILSMFAAKHGA-KHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVH 120
5689*****************875.56******7.579999**********99988887777765 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (199 nodes)
Target sequences: 6049 (2936363 residues searched)
Passed MSV filter: 202 (0.0333939); expected 121.0 (0.02)
Passed bias filter: 146 (0.0241362); expected 121.0 (0.02)
Passed Vit filter: 20 (0.00330633); expected 6.0 (0.001)
Passed Fwd filter: 8 (0.00132253); expected 0.1 (1e-05)
Initial search space (Z): 6049 [actual number of targets]
Domain search space (domZ): 8 [number of targets reported over threshold]
# CPU time: 0.07u 0.00s 00:00:00.07 Elapsed: 00:00:00.03
# Mc/sec: 19477.87
//
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