# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/Met_10.hmm.txt
# target sequence database: proteomes/Thermococcus_kodakarensis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Met_10 [M=199]
Accession: PF02475.15
Description: Met-10+ like-protein
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.1e-69 229.8 0.1 3.9e-69 229.5 0.1 1.1 1 tr|Q5JEI4|Q5JEI4_THEKO tRNA(Phe) (4-demethylwyosine(37)-C(7)
9e-69 228.3 0.1 1.2e-68 227.9 0.1 1.1 1 tr|Q5JD70|Q5JD70_THEKO Met-10+ like protein OS=Thermococcus
2.8e-37 125.5 0.0 3.8e-37 125.1 0.0 1.2 1 tr|Q5JHN7|Q5JHN7_THEKO Met-10+ like protein OS=Thermococcus
1.4e-19 67.8 0.3 2e-19 67.2 0.3 1.3 1 tr|Q5JJ78|Q5JJ78_THEKO Probable tRNA/rRNA methyltransferase
8.2e-10 35.9 0.2 2.1e-09 34.5 0.1 1.7 2 tr|Q5JE68|Q5JE68_THEKO 23S rRNA (Uracil-5-)-methyltransferas
1.1e-09 35.4 0.1 1.9e-09 34.6 0.1 1.3 1 tr|Q5JHF7|Q5JHF7_THEKO 23S rRNA (Uracil-5-)-methyltransferas
2e-08 31.3 0.4 5.1e-08 30.0 0.3 1.7 2 tr|Q5JDP7|Q5JDP7_THEKO Predicted DNA methylase OS=Thermococc
4.9e-07 26.8 0.0 7.1e-07 26.3 0.0 1.2 1 tr|Q5JIX8|Q5JIX8_THEKO N5-glutamine methyltransferase, HemK
2e-05 21.5 0.0 3.3e-05 20.8 0.0 1.3 1 tr|Q5JCY9|Q5JCY9_THEKO tRNA/rRNA cytosine-C5-methylase, NOL1
2.2e-05 21.4 0.0 3.6e-05 20.7 0.0 1.3 1 tr|Q5JDR0|Q5JDR0_THEKO SAM-dependent methyltransferase, UPF0
4.9e-05 20.3 0.0 7.8e-05 19.6 0.0 1.3 1 tr|Q5JGS7|Q5JGS7_THEKO tRNA (1-methyladenosine) methyltransf
0.001 15.9 0.0 0.0013 15.6 0.0 1.3 1 tr|Q5JJF0|Q5JJF0_THEKO Ribosomal RNA small subunit methyltra
0.0011 15.9 0.0 0.0022 14.8 0.0 1.5 1 tr|Q5JEU8|Q5JEU8_THEKO Predicted SAM-dependent methyltransfe
0.0026 14.6 0.0 0.0035 14.2 0.0 1.1 1 tr|Q5JEE1|Q5JEE1_THEKO Protein-L-isoaspartate O-methyltransf
------ inclusion threshold ------
0.012 12.5 0.0 0.017 11.9 0.0 1.3 1 tr|Q5JH73|Q5JH73_THEKO Uncharacterized protein OS=Thermococc
Domain annotation for each sequence (and alignments):
>> tr|Q5JEI4|Q5JEI4_THEKO tRNA(Phe) (4-demethylwyosine(37)-C(7)) aminocarboxypropyltransferase OS=Thermococcus kodakare
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 229.5 0.1 2.5e-71 3.9e-69 2 199 .] 29 223 .. 28 223 .. 0.98
Alignments for each domain:
== domain 1 score: 229.5 bits; conditional E-value: 2.5e-71
EEEEETTEEEEEB-TTSSHHHHHHHHHHHHHSS-SCEEEE-S-SBTTTTB--EEEEEES-.SEEEEEETTEEEEEETTTS---GGGH CS
Met_10 2 kfeiiGdvvilnlreelkeykkvigevildktkvktvlrkvsevegefRtfelevlaGsdstetihkEngcrfklDvskvyfsskle 88
++ +iGdv+il lr el++yk+ i+ev++++ k+vlrk + +ge+R++++e+l+G+d t+t+h Eng+++klDv++++fs+++
tr|Q5JEI4|Q5JEI4_THEKO 29 HWVQIGDVLILPLRPELEPYKRRIAEVYAQVIGAKAVLRKGHI-HGETRKPDYELLYGND-TITVHVENGVKYKLDVARIMFSPANV 113
6999***********************************9887.****************.************************** PP
HHHHHHHTT--TT-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEES-GGG---TT-EEEEEE- CS
Met_10 89 aErerlaklveegevVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvekvvkpileDgrevireqladrvvmn 175
+Er r+a+++++ge+Vvd+fAGiG++++p+ + k+ rv+ai+++P+++++l eni lN v++ ++p+++D+r++ e++adr++m+
tr|Q5JEI4|Q5JEI4_THEKO 114 KERVRMAEVAKPGELVVDMFAGIGHLSLPMTV-HKGARVIAIEKDPYTFRFLVENIWLNGVQDLMTPYNMDNRDFPAENIADRILMG 199
*******************************9.67788************************************************* PP
-TTTGGGGHHHHHHHEEEEEEEEE CS
Met_10 176 lpksaieFldkvlaalkdggvihy 199
++ +++eF+ k+l+++kd+++ihy
tr|Q5JEI4|Q5JEI4_THEKO 200 YVVTTHEFIPKALSIAKDEAIIHY 223
***********************9 PP
>> tr|Q5JD70|Q5JD70_THEKO Met-10+ like protein OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) OX
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 227.9 0.1 7.8e-71 1.2e-68 2 199 .] 82 277 .. 81 277 .. 0.99
Alignments for each domain:
== domain 1 score: 227.9 bits; conditional E-value: 7.8e-71
EEEEETTEEEEEB-TTSSHHHHHHHHHHHHHS.S-SCEEEE-S-SBTTTTB--EEEEEES-.SEEEEEETTEEEEEETTTS---GGG CS
Met_10 2 kfeiiGdvvilnlreelkeykkvigevildkt.kvktvlrkvsevegefRtfelevlaGsdstetihkEngcrfklDvskvyfsskl 87
+f+iiGd++i++l+eel++y k ige+il+++ ++k+v+ k s+v+ge+R +el +laG+++tet h+Eng+r+klD+++vy+ ++l
tr|Q5JD70|Q5JD70_THEKO 82 SFDIIGDIAIIELPEELMDYGKAIGEAILKVHrHIKAVFAKGSKVSGEYRIRELIHLAGEKRTETLHRENGIRLKLDIARVYYTPRL 168
79************************************************************************************* PP
HHHHHHHHTT--TT-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEES-GGG---TT-EEEEEE CS
Met_10 88 eaErerlaklveegevVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvekvvkpileDgrevireqladrvvm 174
++Er+r+ + ++ge+V d+fAG+Gp++i +ak kak v+a d+nP +v+yl+en klNk +v+ pil+D+r+v+ + +adrv+m
tr|Q5JD70|Q5JD70_THEKO 169 ATERMRVFERTQPGEIVFDMFAGVGPYSILLAK--KAKLVFACDINPWAVRYLEENKKLNKTPNVI-PILGDVRKVAGQIKADRVIM 252
*********************************..*****************************99.******************** PP
--TTTGGGGHHHHHHHEEEEEEEEE CS
Met_10 175 nlpksaieFldkvlaalkdggvihy 199
nlpk a Fl++++ +k gg++hy
tr|Q5JD70|Q5JD70_THEKO 253 NLPKFADRFLKEAMMSVKSGGIVHY 277
************************9 PP
>> tr|Q5JHN7|Q5JHN7_THEKO Met-10+ like protein OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) OX
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 125.1 0.0 2.5e-39 3.8e-37 2 177 .. 89 266 .. 88 286 .. 0.90
Alignments for each domain:
== domain 1 score: 125.1 bits; conditional E-value: 2.5e-39
EEEEETTEEEEEB-TTSSHHHHHHHHHHHHHS.S-SCEEEE-S-SBTTTTB--EEEEEES-.SEEEEEETTEEEEEETTTS---GGG CS
Met_10 2 kfeiiGdvvilnlreelkeykkvigevildkt.kvktvlrkvsevegefRtfelevlaGsdstetihkEngcrfklDvskvyfsskl 87
++++iGd+++++++ el++ +++i+ + +++ +k v +k + eg fR +++ ++ G+++++t+hkEng+++k+D+sk +f+++
tr|Q5JHN7|Q5JHN7_THEKO 89 RYDVIGDIAVIQIPPELEHRAEDIVWGLRKVHpFIKVVAKKGFH-EGAFRIRDYSIIWGEKRLTTVHKENGVEIKVDLSKAFFNPRM 174
79******************************556655555555.****************************************** PP
HHHHHHHHTT--TT-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT..-TTCEEEEES-GGG---.TT-EEE CS
Met_10 88 eaErerlaklveegevVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNk..vekvvkpileDgrevir.eqladr 171
+ Er rla+lv++ge+++ fAG+ p+a++ia+y k++++ a++ln +++++ eni+lN+ ++ ++ i++D+ +v++ +++r
tr|Q5JHN7|Q5JHN7_THEKO 175 KGERYRLAQLVKDGERILIPFAGVLPYALVIARY-KKVKITAVELNEDAYRLGLENIELNRkrLKGEIELIQGDAFKVLPeLPTFER 260
*********************************6.5667*********************644899***********9995567888 PP
EEE--T CS
Met_10 172 vvmnlp 177
v+ + p
tr|Q5JHN7|Q5JHN7_THEKO 261 VISPTP 266
887766 PP
>> tr|Q5JJ78|Q5JJ78_THEKO Probable tRNA/rRNA methyltransferase OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 67.2 0.3 1.3e-21 2e-19 9 165 .. 120 281 .. 115 370 .. 0.80
Alignments for each domain:
== domain 1 score: 67.2 bits; conditional E-value: 1.3e-21
EEEEEB-TT.SSHHHHHHHHHHHHHS.S-SCEEEE-S-SBTTTTB..--EE.EEEES-.SEEEEEETTEEEEEET..TTS---GGGH CS
Met_10 9 vvilnlree.lkeykkvigevildkt.kvktvlrkvsevegefRt..fele.vlaGsdstetihkEngcrfklDv..skvyfsskle 88
++ +++++ ++ +k +++e+i++ + +++tv++k++ +++ R+ +e+e vl G+++ t+ +E +f +D+ +k f
tr|Q5JJ78|Q5JJ78_THEKO 120 IASIQISSVgMERFKLDLAEAIMEAEpEIETVFEKNTG-RSRRREglPEIErVLLGKEKYRTVIEEGRAKFIVDMrgQKTGFFLDQR 205
5556665541456999*******************999.777776335554389********************9555899999999 PP
HHHHHHHTT--TT-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEES-GGG--- CS
Met_10 89 aErerlaklveegevVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvekvvkpileDgrevir 165
+ r l k v++g +V+dvf G fai +a+ + a +v+a+d+ P +++++ken klN ve+++k i + + v++
tr|Q5JJ78|Q5JJ78_THEKO 206 ENRIALEKYVKPGMRVLDVFTYTGGFAIHAAV-AGADEVVAVDKSPWAINMVKENAKLNGVEDKMKYIVGSAFPVME 281
999999*************************9.67777****************************99987766654 PP
>> tr|Q5JE68|Q5JE68_THEKO 23S rRNA (Uracil-5-)-methyltransferase OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 34.5 0.1 1.4e-11 2.1e-09 95 155 .. 276 334 .. 272 375 .. 0.84
2 ? -1.7 0.0 1.7 2.6e+02 123 143 .. 368 388 .. 356 403 .. 0.75
Alignments for each domain:
== domain 1 score: 34.5 bits; conditional E-value: 1.4e-11
HTT--TT-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTCEEE CS
Met_10 95 aklveegevVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvekvvkp 155
++ + ge+++d++AG+G f + +ak + +v +i+lnP +v+ ++n + N+v+ + k+
tr|Q5JE68|Q5JE68_THEKO 276 VENFASGEMILDLYAGVGTFGVWLAK--RRFQVEGIELNPFAVEIANKNAEINNVDATFKV 334
567899********************..9999***********************998865 PP
== domain 2 score: -1.7 bits; conditional E-value: 1.7
TSSEEEEEES-HHHHHHHHHH CS
Met_10 123 kakrvlaidlnPesvkylken 143
+ +v+ + nP+++k+ en
tr|Q5JE68|Q5JE68_THEKO 368 EIGKVVYVSCNPKAFKLDYEN 388
455688889999999975555 PP
>> tr|Q5JHF7|Q5JHF7_THEKO 23S rRNA (Uracil-5-)-methyltransferase OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 34.6 0.1 1.3e-11 1.9e-09 95 172 .. 272 345 .. 257 369 .. 0.80
Alignments for each domain:
== domain 1 score: 34.6 bits; conditional E-value: 1.3e-11
HTT--TT-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEES-GGG---TT-EEEE CS
Met_10 95 aklveegevVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvekvvkpileDgrevireqladrv 172
++ ege V+d++ G+G f i +ak ++ +v +i++nP +v++ k+n + N v+ ++ ++ ++v + d v
tr|Q5JHF7|Q5JHF7_THEKO 272 VAELVEGEKVLDLYSGVGTFGIYLAK--RGFKVEGIEINPFAVEMAKKNAQINGVDAEFRV--GEDKDVNSLSEYDTV 345
334558********************..9**************************988743..223344444455555 PP
>> tr|Q5JDP7|Q5JDP7_THEKO Predicted DNA methylase OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 30.0 0.3 3.3e-10 5.1e-08 100 177 .. 47 121 .. 39 148 .. 0.89
2 ? -0.8 0.0 0.9 1.4e+02 76 93 .. 138 155 .. 122 184 .. 0.61
Alignments for each domain:
== domain 1 score: 30.0 bits; conditional E-value: 3.3e-10
TT-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEES-GGG---TT-EEEEEE--T CS
Met_10 100 egevVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvekvvkpileDgrevireqladrvvmnlp 177
eg+v+ d+ AG G + i + ++ a+ v+a++ + e+ + +en + ve++++ +++D+ e+ + +d v+mn p
tr|Q5JDP7|Q5JDP7_THEKO 47 EGKVIADLGAGTGVLGIGAVLLG-AENVYAVERDKEALEIARENARSLGVEDKIEFVNADVSEF--SVNVDTVIMNPP 121
799**************998755.666*************************************..599*******77 PP
== domain 2 score: -0.8 bits; conditional E-value: 0.9
EETTTS---GGGHHHHHH CS
Met_10 76 lDvskvyfsskleaErer 93
++vs+v +s +l++ r
tr|Q5JDP7|Q5JDP7_THEKO 138 FEVSDVVYSIHLAKPEVR 155
667777777776654333 PP
>> tr|Q5JIX8|Q5JIX8_THEKO N5-glutamine methyltransferase, HemK family OS=Thermococcus kodakarensis (strain ATCC BAA-918
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 26.3 0.0 4.6e-09 7.1e-07 98 151 .. 32 83 .. 23 108 .. 0.90
Alignments for each domain:
== domain 1 score: 26.3 bits; conditional E-value: 4.6e-09
--TT-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TT CS
Met_10 98 veegevVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvek 151
v+ g++ +d+ G G a+ +a+ ka+ vl++d+nP +v++ +en + N + +
tr|Q5JIX8|Q5JIX8_THEKO 32 VKVGDIALDMGTGTGIIALLLAR--KARWVLGVDINPLAVELARENARINGIIN 83
7899*******************..*************************8755 PP
>> tr|Q5JCY9|Q5JCY9_THEKO tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family OS=Thermococcus kodakarensis (strain AT
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 20.8 0.0 2.2e-07 3.3e-05 99 199 .] 106 210 .. 97 210 .. 0.82
Alignments for each domain:
== domain 1 score: 20.8 bits; conditional E-value: 2.2e-07
-TT-EEEETT-TTTCCHHHCCHHTT.SSEEEEEES-HHHHHHHHHHHHHTT-TTCE.EEEES-GGG---.TT-EEEEEE--TTTGGG CS
Met_10 99 eegevVvdvfAGiGpfaipiakysk.akrvlaidlnPesvkylkeniklNkvekvv.kpileDgrevir.eqladrvvmnlpksaie 182
++ge+V+d+ A G + ia+y + + ++a+d n + + l n+ N++ + ++ + Dg+ ++r e+++drv++++p s++
tr|Q5JCY9|Q5JCY9_THEKO 106 KPGELVLDMAAAPGSKTGQIAQYMQnEGCIIANDPNRDRANVLIANL--NRMGVLIaRVTTRDGASFARfENTFDRVLLDAPCSSVG 190
79*******************99751678*************99885..5565555156789************************9 PP
GHHH...HHHHEEEEEEEEE CS
Met_10 183 Fldk...vlaalkdggvihy 199
+ k l+ ++++v+ y
tr|Q5JCY9|Q5JCY9_THEKO 191 MIRKswrFLREWREKAVVKY 210
99994444455555577665 PP
>> tr|Q5JDR0|Q5JDR0_THEKO SAM-dependent methyltransferase, UPF0020 family OS=Thermococcus kodakarensis (strain ATCC BAA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 20.7 0.0 2.3e-07 3.6e-05 90 166 .. 116 196 .. 110 241 .. 0.73
Alignments for each domain:
== domain 1 score: 20.7 bits; conditional E-value: 2.3e-07
HHHHHHTT.--TT-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-..TTCEEEEES-GGG---...T CS
Met_10 90 Ererlakl.veegevVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkv..ekvvkpileDgrevir...e 166
r+++ ++ +ege+V+d G G+ ai ++k ++ v++i+++P+ ++ + n ++ ++++i++D+ ev++ +
tr|Q5JDR0|Q5JDR0_THEKO 116 TRNKVNTVmPREGETVLDTCMGLGYTAIEASK--RGAYVITIEKDPNVIEIARINPWSRELftGGKIQVIQGDAFEVVKkfkQ 196
566666553689********************..99**************999887655542267899999999998874423 PP
>> tr|Q5JGS7|Q5JGS7_THEKO tRNA (1-methyladenosine) methyltransferase OS=Thermococcus kodakarensis (strain ATCC BAA-918
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 19.6 0.0 5.1e-07 7.8e-05 98 194 .. 91 187 .. 84 203 .. 0.87
Alignments for each domain:
== domain 1 score: 19.6 bits; conditional E-value: 5.1e-07
--TT-EEEETT-TTTCCHHHCCHH.TTSSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEES-GGG---TT-EEEEEE--TTTGGGG CS
Met_10 98 veegevVvdvfAGiGpfaipiaky.skakrvlaidlnPesvkylkeniklNkvekvvkpileDgrevireqladrvvmnlpksaieF 183
+++g++V++ AG G ++i +a + +v++ ++ + ++ k+n++l +++v ++ + i e+ ad++v++lp + ++
tr|Q5JGS7|Q5JGS7_THEKO 91 ISPGDTVIEAGAGSGALTIFLANAvGPTGKVISYEVRKDFYEIAKKNVELAGFSDRVVLKNKSIYDGIDEKEADHIVLDLP-QPENV 176
689****************98874166789***************************999999999999************.66777 PP
HHHHHHHEEEE CS
Met_10 184 ldkvlaalkdg 194
l +++++l+ g
tr|Q5JGS7|Q5JGS7_THEKO 177 LPHAVDVLRPG 187
77777777665 PP
>> tr|Q5JJF0|Q5JJF0_THEKO Ribosomal RNA small subunit methyltransferase C OS=Thermococcus kodakarensis (strain ATCC BAA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.6 0.0 8.6e-06 0.0013 94 152 .. 48 106 .. 14 151 .. 0.76
Alignments for each domain:
== domain 1 score: 15.6 bits; conditional E-value: 8.6e-06
HHTT..--TT-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTC CS
Met_10 94 lakl..veegevVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvekv 152
l++ ++g +V+d+ G Gp i+++++ v+ d+n ++v k+n+k N v +
tr|Q5JJF0|Q5JJF0_THEKO 48 LIESmvLQPGWRVLDLGCGYGPIGIVASRFV--DYVVMTDVNRRAVSIAKKNLKINGVRNA 106
44433489********************955..567999******************9875 PP
>> tr|Q5JEU8|Q5JEU8_THEKO Predicted SAM-dependent methyltransferase OS=Thermococcus kodakarensis (strain ATCC BAA-918 /
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.8 0.0 1.5e-05 0.0022 97 171 .. 38 111 .. 26 146 .. 0.86
Alignments for each domain:
== domain 1 score: 14.8 bits; conditional E-value: 1.5e-05
T--TT-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEES-GGG---TT-EEE CS
Met_10 97 lveegevVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvekvvkpileDgrevireqladr 171
+ +g +V+d+ AG G +++ak + ak + d + ++ ke +k +++ ++ +++D+rev++ + ++
tr|Q5JEU8|Q5JEU8_THEKO 38 KLPKGGRVLDICAGTGVAGVALAKATGAKLLTVLDARKDDLELAKEWLKIADINPELNLVQGDAREVAK-LVGEH 111
5668999*****************999999999**********************************84.44444 PP
>> tr|Q5JEE1|Q5JEE1_THEKO Protein-L-isoaspartate O-methyltransferase OS=Thermococcus kodakarensis (strain ATCC BAA-918
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.2 0.0 2.3e-05 0.0035 98 175 .. 75 151 .. 67 157 .. 0.87
Alignments for each domain:
== domain 1 score: 14.2 bits; conditional E-value: 2.3e-05
--TT-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEES-GGG.---TT-EEEEEE- CS
Met_10 98 veegevVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvekvvkpileDgre.vireqladrvvmn 175
++g V+++ G G a i+ + k v++i+ Pe v++ ++n+++ v++v ++il+Dg + + ++ dr++
tr|Q5JEE1|Q5JEE1_THEKO 75 LKPGMNVLEIGTGSGWNAALISELVKTD-VYTIERIPELVEFARRNLERAGVKNV-HVILGDGTKgFPPKAPYDRIIVT 151
68899999999*******99*9988877.***********************875.69999987626669999999975 PP
>> tr|Q5JH73|Q5JH73_THEKO Uncharacterized protein OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.9 0.0 0.00011 0.017 73 160 .. 55 140 .. 31 194 .. 0.82
Alignments for each domain:
== domain 1 score: 11.9 bits; conditional E-value: 0.00011
EEEEETTTS---GGGHHHHHHHHTT--TT.-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEES CS
Met_10 73 rfklDvskvyfsskleaErerlaklveeg.evVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvekvvkpile 158
+++D+ + ++ + r +l e g e + dv GiG i a k +r ++id++P +++ ++n + v++ ++ i++
tr|Q5JH73|Q5JH73_THEKO 55 DLWMDMEGLRYATHEVVAKYRAERLKEFGvESIADVSCGIGIQLIFYAM--KVERAYGIDIDPLKIEFARRNAEKYGVSN-IEFINA 138
5667777777777777777777777665548999**************9..9999*******************999987.568888 PP
-G CS
Met_10 159 Dg 160
D+
tr|Q5JH73|Q5JH73_THEKO 139 DS 140
86 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (199 nodes)
Target sequences: 2301 (637680 residues searched)
Passed MSV filter: 110 (0.0478053); expected 46.0 (0.02)
Passed bias filter: 87 (0.0378096); expected 46.0 (0.02)
Passed Vit filter: 22 (0.00956106); expected 2.3 (0.001)
Passed Fwd filter: 15 (0.0065189); expected 0.0 (1e-05)
Initial search space (Z): 2301 [actual number of targets]
Domain search space (domZ): 15 [number of targets reported over threshold]
# CPU time: 0.04u 0.00s 00:00:00.04 Elapsed: 00:00:00.02
# Mc/sec: 6344.92
//
[ok]