# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/Methyltr_RsmB-F.hmm.txt
# target sequence database: proteomes/Amphimedon_queenslandica.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Methyltr_RsmB-F [M=200]
Accession: PF01189.16
Description: 16S rRNA methyltransferase RsmB/F
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.8e-72 243.1 0.0 1e-71 242.0 0.0 1.6 1 tr|A0A1X7UHI1|A0A1X7UHI1_AMPQE Uncharacterized protein OS=Amphi
1.5e-44 153.3 0.0 2.1e-44 152.8 0.0 1.3 1 tr|A0A1X7VKX0|A0A1X7VKX0_AMPQE Uncharacterized protein OS=Amphi
1e-37 131.0 0.0 3.4e-37 129.3 0.0 1.8 1 tr|A0A1X7U173|A0A1X7U173_AMPQE Uncharacterized protein OS=Amphi
4.3e-37 129.0 0.0 1.1e-36 127.6 0.0 1.8 1 tr|A0A1X7V4K8|A0A1X7V4K8_AMPQE Uncharacterized protein OS=Amphi
6.8e-37 128.3 0.0 9.2e-37 127.9 0.0 1.2 1 tr|A0A1X7TGD9|A0A1X7TGD9_AMPQE Uncharacterized protein OS=Amphi
2.6e-21 77.5 0.0 3.1e-21 77.2 0.0 1.1 1 tr|A0A1X7T0M2|A0A1X7T0M2_AMPQE Uncharacterized protein OS=Amphi
2.9e-05 25.1 0.0 0.00028 21.9 0.0 2.0 2 tr|A0A1X7V969|A0A1X7V969_AMPQE Uncharacterized protein OS=Amphi
6.7e-05 23.9 0.0 9.8e-05 23.3 0.0 1.3 1 tr|A0A1X7VEF1|A0A1X7VEF1_AMPQE Uncharacterized protein OS=Amphi
0.00041 21.3 0.0 0.0006 20.8 0.0 1.3 1 tr|A0A1X7VHW0|A0A1X7VHW0_AMPQE Uncharacterized protein OS=Amphi
------ inclusion threshold ------
0.019 15.9 0.1 0.11 13.3 0.1 2.2 1 tr|A0A1X7UE53|A0A1X7UE53_AMPQE Uncharacterized protein OS=Amphi
0.019 15.9 0.0 0.03 15.2 0.0 1.3 1 tr|A0A1X7VJI0|A0A1X7VJI0_AMPQE Uncharacterized protein OS=Amphi
0.026 15.4 0.0 0.99 10.3 0.0 2.6 3 tr|A0A1X7VHW4|A0A1X7VHW4_AMPQE Uncharacterized protein OS=Amphi
0.059 14.3 0.0 0.2 12.6 0.0 1.8 2 tr|A0A1X7TQI1|A0A1X7TQI1_AMPQE Uncharacterized protein OS=Amphi
0.071 14.0 0.0 0.32 11.8 0.0 1.9 2 tr|A0A1X7TQB9|A0A1X7TQB9_AMPQE Uncharacterized protein OS=Amphi
0.077 13.9 0.0 0.14 13.0 0.0 1.4 1 tr|A0A1X7UPR6|A0A1X7UPR6_AMPQE tRNA (guanine(37)-N1)-methyltran
0.1 13.5 0.0 0.65 10.9 0.0 2.0 2 tr|A0A1X7TQ01|A0A1X7TQ01_AMPQE Uncharacterized protein OS=Amphi
0.14 13.1 0.0 0.33 11.8 0.0 1.6 2 tr|A0A1X7TZT1|A0A1X7TZT1_AMPQE Uncharacterized protein OS=Amphi
0.14 13.0 0.0 0.24 12.3 0.0 1.3 1 tr|A0A1X7UZ07|A0A1X7UZ07_AMPQE Uncharacterized protein OS=Amphi
0.15 12.9 0.0 0.26 12.2 0.0 1.4 1 tr|A0A1X7V2C8|A0A1X7V2C8_AMPQE Uncharacterized protein OS=Amphi
0.18 12.7 0.0 0.19 12.6 0.0 1.1 1 tr|A0A1X7V5I2|A0A1X7V5I2_AMPQE Uncharacterized protein OS=Amphi
0.25 12.2 0.0 1.5 9.7 0.0 1.9 2 tr|A0A1X7SEL2|A0A1X7SEL2_AMPQE Uncharacterized protein OS=Amphi
0.3 12.0 0.0 0.46 11.4 0.0 1.4 1 tr|A0A1X7U326|A0A1X7U326_AMPQE tRNA (adenine(58)-N(1))-methyltr
0.36 11.7 0.0 0.72 10.7 0.0 1.4 1 tr|A0A1X7VMP2|A0A1X7VMP2_AMPQE Uncharacterized protein OS=Amphi
Domain annotation for each sequence (and alignments):
>> tr|A0A1X7UHI1|A0A1X7UHI1_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 242.0 0.0 5.5e-75 1e-71 1 200 [] 320 528 .. 320 528 .. 0.93
Alignments for each domain:
== domain 1 score: 242.0 bits; conditional E-value: 5.5e-75
HHHH---TT-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CCCCHHHHCC-- CS
Methyltr_RsmB-F 1 allLapqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlggel 79
+++Lapq +e+ilD+caaPGgK t+ia+lmkn+g +v +d +keR k++++n+ r+gv+ntiv+++D+rk+ kv++g
tr|A0A1X7UHI1|A0A1X7UHI1_AMPQE 320 VMALAPQVNERILDMCAAPGGKATYIAALMKNTGLLVCNDYKKERCKSLIANIYRMGVQNTIVCNYDGRKFTKVMSG-- 396
589*************************************************************************9.. PP
EEEEEEEE--CCGGGTTT-TTHHHH.-CCHHCCHHHHHHHHHHHHHHHE....EEEEEEEEEES---CTCTHHHHHHHH CS
Methyltr_RsmB-F 80 fDriLlDaPCsgtgvirrdpdvklrrkekdiaqlaklqkellsaaidll....kkgGvlvYsTCsvlveEneevieeaL 154
fDriLlDaPCsgtgvi +d++vk++++e i ++++ qkel+ aid l +gG+lvYsTCsvlveEne vi++aL
tr|A0A1X7UHI1|A0A1X7UHI1_AMPQE 397 FDRILLDAPCSGTGVIAKDQSVKTSKSEVAIERCSHMQKELILEAIDALnassSTGGYLVYSTCSVLVEENEGVIDYAL 475
************************************************9998899************************ PP
HH-TTEEEESSBSTTST.TSSECEEC........T-EEE-TTTTS.-SEEEEEEE CS
Methyltr_RsmB-F 155 kkredvelvetelsepk.glklgeea........gtlrllPhtenkdgffiaklk 200
++r +v++v+t l+ ++ g + + + t+r++Pht+n+dgff+aklk
tr|A0A1X7UHI1|A0A1X7UHI1_AMPQE 476 SRR-NVKVVDTGLNFGVsGFTRFR-EkrfhpslsLTKRFYPHTHNMDGFFVAKLK 528
*99.89999986654330333222.2579999999******************96 PP
>> tr|A0A1X7VKX0|A0A1X7VKX0_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 152.8 0.0 1.1e-47 2.1e-44 3 165 .. 226 401 .. 224 453 .. 0.87
Alignments for each domain:
== domain 1 score: 152.8 bits; conditional E-value: 1.1e-47
HH---TT-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CCCCHHHHCC.... CS
Methyltr_RsmB-F 3 lLapqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlgg.... 77
+L+p e +++lD+caaPGgK th+a lm+nkg+++A+d+++ ++k++++n+kr+g+tn+ +++ D + + ++
tr|A0A1X7VKX0|A0A1X7VKX0_AMPQE 226 VLKPTETDRVLDMCAAPGGKATHLATLMRNKGVIIALDRSAGKMKSLKHNVKRFGLTNVHCFHHDSTAACSSKSDdass 304
89***************************************************************98765554445666 PP
............--EEEEEEEE--CCGGGTTT-TTHHHH.-CCHHCCHHHHHHHHHHHHHHHEEEEEEEEEEES---CT CS
Methyltr_RsmB-F 78 ............elfDriLlDaPCsgtgvirrdpdvklrrkekdiaqlaklqkellsaaidllkkgGvlvYsTCsvlve 144
++fD++LlDaPCsg+g ++p ++ + +d+++l qk+ll a+ llk+gG l+YsTCs+ +e
tr|A0A1X7VKX0|A0A1X7VKX0_AMPQE 305 qrnfpgpppyppAFFDKVLLDAPCSGLG---QRPRFNFSINLTDFTSLPLYQKKLLAQAVLLLKPGGKLLYSTCSLSPE 380
79************************98...57778888899************************************* PP
CTHHHHHHHHHH-TTEEEESS CS
Methyltr_RsmB-F 145 EneevieeaLkkredvelvet 165
Ene++++ +L++ +++ l+e
tr|A0A1X7VKX0|A0A1X7VKX0_AMPQE 381 ENEAQVKWLLSTFKEMILIEQ 401
**********99888877654 PP
>> tr|A0A1X7U173|A0A1X7U173_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 129.3 0.0 1.8e-40 3.4e-37 3 199 .. 167 425 .. 165 426 .. 0.88
Alignments for each domain:
== domain 1 score: 129.3 bits; conditional E-value: 1.8e-40
HH---TT-EEEECS-TT-HHHHHHHHHTTTT.........SEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CCCCH CS
Methyltr_RsmB-F 3 lLapqeeetilDlcaaPGgKTthiaelmknk.........gtvvAvdankeRlkrvaenlkrLgvtntivleaDarkid 72
lL ++ +lD+caaPG+KT+ + e ++ + g v+A+da+++R +++ krL+ +i+++ Da++++
tr|A0A1X7U173|A0A1X7U173_AMPQE 167 LLGVEPRHYVLDMCAAPGSKTSQLIESLHYQdtlessipsGIVIANDADNSRCYTLVHQAKRLNSPCLIITNNDATQFP 245
566778889*************998764432112222222789**********************************99 PP
HHHCC........--EEEEEEEE--CCGGGTTT-TTHHHH.-CCHHCCHHHHHHHHHHHHHHHEEEEEEEEEEES---C CS
Methyltr_RsmB-F 73 kvlgg........elfDriLlDaPCsgtgvirrdpdvklrrkekdiaqlaklqkellsaaidllkkgGvlvYsTCsvlv 143
+ ++Dr+L D+PCsg g++r++p + + + ++ +l++lq +ll ++llk+gG lvYsTCs+++
tr|A0A1X7U173|A0A1X7U173_AMPQE 246 VLYYNnvdgkrvpLQYDRVLCDVPCSGDGTMRKNPTIWRSWNSSTPLSLHRLQLRLLMRGLELLKPGGRLVYSTCSMNP 324
776666778899999**********************7777888999******************************** PP
TCTHHHHHHHHHH-T.TEEEESSBST.TSTTSSECEEC......................................... CS
Methyltr_RsmB-F 144 eEneevieeaLkkre.dvelvetels.epkglklgeea......................................... 179
E+e+vi+ aLk + velv+t+ + + ++g+++
tr|A0A1X7U173|A0A1X7U173_AMPQE 325 IEDEAVIAGALKLCNgSVELVDTSSLlPGLKRTNGVNTwkvltkngewissyketpsnllhtvhssmfpptaleadtyq 403
************8653799999964414466677777799*************************************** PP
..T-EEE-TTTTS.-SEEEEEE CS
Methyltr_RsmB-F 180 ..gtlrllPhtenkdgffiakl 199
+r++Ph++++ gff+a l
tr|A0A1X7U173|A0A1X7U173_AMPQE 404 lnRCIRIFPHQQDTGGFFVALL 425
99999***************87 PP
>> tr|A0A1X7V4K8|A0A1X7V4K8_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 127.6 0.0 5.9e-40 1.1e-36 2 199 .. 778 975 .. 777 976 .. 0.88
Alignments for each domain:
== domain 1 score: 127.6 bits; conditional E-value: 5.9e-40
HHH---TT-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CCCC.HHHHCC-- CS
Methyltr_RsmB-F 2 llLapqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarki.dkvlggel 79
++L p ++ ++D+caaPG+KT+hia+ mkn+g + A d++k+R +++++ l++ +vt ++v+++D k+ +++ ++
tr|A0A1X7V4K8|A0A1X7V4K8_AMPQE 778 YVLSPPPGASVIDACAAPGSKTSHIAAAMKNTGSIHAFDRDKKRCDAMKALLRKYNVTCVTVSNMDFLKVcPEDYSN-- 854
6899**************************************************************87752566665.. PP
EEEEEEEE--CCGGGTTT-TTHHHH.-CCHHCCHHHHHHHHHHHHHH..HEEEEEEEEEEES---CTCTHHHHHHHHHH CS
Methyltr_RsmB-F 80 fDriLlDaPCsgtgvirrdpdvklrrkekdiaqlaklqkellsaaid..llkkgGvlvYsTCsvlveEneevieeaLkk 156
+ iL+D Csg g+irr ++++ + +++ +++l++ q+ +l+ a+ ++k +vYsTCs+++eEne v+ eaL++
tr|A0A1X7V4K8|A0A1X7V4K8_AMPQE 855 VQYILVDPSCSGSGIIRR-QEIHSSVSPQRLTSLSRFQSMILKHALSfpSVK---RVVYSTCSIHPEENEGVVSEALSA 929
99**************87.68**********************987511555...69*********************9 PP
-TT.EEEESS..BSTTSTTSSECEECT-EEE-TTTTS.-SEEEEEE CS
Methyltr_RsmB-F 157 red.velvet..elsepkglklgeeagtlrllPhtenkdgffiakl 199
++d +lv++ ++++ ++++ ++ +r++P ++ +gff+a +
tr|A0A1X7V4K8|A0A1X7V4K8_AMPQE 930 HKDqFKLVHIlpDWTNRGLAEYEGGSCCVRVIPSEDFCQGFFVASF 975
9762688876334555555666666799****************87 PP
>> tr|A0A1X7TGD9|A0A1X7TGD9_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 127.9 0.0 4.9e-40 9.2e-37 3 165 .. 6 186 .. 4 211 .. 0.85
Alignments for each domain:
== domain 1 score: 127.9 bits; conditional E-value: 4.9e-40
HH---TT-EEEECS-TT-HHHHHHHHHTTTT.........SEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CCCCH CS
Methyltr_RsmB-F 3 lLapqeeetilDlcaaPGgKTthiaelmknk.........gtvvAvdankeRlkrvaenlkrLgvtntivleaDarkid 72
lL ++ ++lD+caaPG+KT+ + e ++ + g v+A+da+++R +++ krL+ +i+++ Da++++
tr|A0A1X7TGD9|A0A1X7TGD9_AMPQE 6 LLGVEPRHFVLDMCAAPGSKTSQLIESLHYQdtlessipsGIVIANDADNSRCYTLVHQAKRLNSPCLIITNNDATQFP 84
677788899*************998764432112222222789**********************************99 PP
HHHCC........--EEEEEEEE--CCGGGTTT-TTHHHH.-CCHHCCHHHHHHHHHHHHHHHEEEEEEEEEEES---C CS
Methyltr_RsmB-F 73 kvlgg........elfDriLlDaPCsgtgvirrdpdvklrrkekdiaqlaklqkellsaaidllkkgGvlvYsTCsvlv 143
+ ++Dr+L D+PCsg g++r++p + + ++++ +l++lq +ll ++llk+gG lvYsTCs+++
tr|A0A1X7TGD9|A0A1X7TGD9_AMPQE 85 VLYYNnvdgkrvpLQYDRVLCDVPCSGDGTMRKNPTIWRSWNPNTPLSLHRLQLRLLMRGLELLKPGGRLVYSTCSMNP 163
776666778899999**********************88899************************************* PP
TCTHHHHHHHHHH-T.TEEEESS CS
Methyltr_RsmB-F 144 eEneevieeaLkkre.dvelvet 165
E+e+vi+ aLk + velv+t
tr|A0A1X7TGD9|A0A1X7TGD9_AMPQE 164 IEDEAVIAGALKLCNgSVELVDT 186
***********975426777777 PP
>> tr|A0A1X7T0M2|A0A1X7T0M2_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 77.2 0.0 1.6e-24 3.1e-21 79 166 .. 9 97 .. 2 129 .. 0.87
Alignments for each domain:
== domain 1 score: 77.2 bits; conditional E-value: 1.6e-24
-EEEEEEEE--CCGGGTTT-TTHHHH.-CCHHCCHHHHHHHHHHHHHHHEEEEEEEEEEES---CTCTHHHHHHHHHH- CS
Methyltr_RsmB-F 79 lfDriLlDaPCsgtgvirrdpdvklrrkekdiaqlaklqkellsaaidllkkgGvlvYsTCsvlveEneevieeaLkkr 157
++Dr+L D+PCsg g++r++p + + + ++ +l++lq +ll ++llk+gG lvYsTCs+++ E+e+vi+ aLk
tr|A0A1X7T0M2|A0A1X7T0M2_AMPQE 9 QYDRVLCDVPCSGDGTMRKNPTIWRSWNSSTPLSLHRLQLRLLMRGLELLKPGGRLVYSTCSMNPIEDEAVIAGALKFC 87
69*********************7777888999*******************************************975 PP
T.TEEEESSB CS
Methyltr_RsmB-F 158 e.dvelvete 166
+ velv+t+
tr|A0A1X7T0M2|A0A1X7T0M2_AMPQE 88 NgSVELVDTS 97
4267777774 PP
>> tr|A0A1X7V969|A0A1X7V969_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 21.9 0.0 1.5e-07 0.00028 6 74 .. 27 95 .. 23 104 .. 0.87
2 ? 1.1 0.0 0.33 6.3e+02 108 144 .. 101 137 .. 99 146 .. 0.89
Alignments for each domain:
== domain 1 score: 21.9 bits; conditional E-value: 1.5e-07
--TT-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CCCCHHH CS
Methyltr_RsmB-F 6 pqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkv 74
+e++++lDl ++ G +++++ ++g+v+Avd n+eR++ +e + ++++ + + aD +++
tr|A0A1X7V969|A0A1X7V969_AMPQE 27 VKEGDHVLDLGCGTGHLAVVLSKIVGEEGKVIAVDPNNERIELAKEVNSSINIEYLVASDADFPTDQQY 95
6899****************************************9999999999777777776655555 PP
== domain 2 score: 1.1 bits; conditional E-value: 0.33
CHHCCHHHHHHHHHHHHHHHEEEEEEEEEEES---CT CS
Methyltr_RsmB-F 108 kdiaqlaklqkellsaaidllkkgGvlvYsTCsvlve 144
+d+++ k ++ +++ + +l++gG+ ++T s +++
tr|A0A1X7V969|A0A1X7V969_AMPQE 101 TDVIHWIKDKESIFKKVYCSLRPGGTFGFTTFSNEPK 137
58889999999******************99998775 PP
>> tr|A0A1X7VEF1|A0A1X7VEF1_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 23.3 0.0 5.2e-08 9.8e-05 4 76 .. 27 98 .. 24 119 .. 0.88
Alignments for each domain:
== domain 1 score: 23.3 bits; conditional E-value: 5.2e-08
H---TT-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CCCCHHHHC CS
Methyltr_RsmB-F 4 LapqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlg 76
L pqe++++lDl ++ G T +ae + ++g vv +d ++eR+k a k+ g n+i + aD + ++++
tr|A0A1X7VEF1|A0A1X7VEF1_AMPQE 27 LSPQEKDKVLDLGCGTGRLTQVLAERVGPEGLVVGIDPDEERIKV-AIEEKGHGRSNLIFVVADDQSFPEDQY 98
89****************************************985.555678899999999999888877655 PP
>> tr|A0A1X7VHW0|A0A1X7VHW0_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 20.8 0.0 3.2e-07 0.0006 4 72 .. 25 93 .. 22 121 .. 0.82
Alignments for each domain:
== domain 1 score: 20.8 bits; conditional E-value: 3.2e-07
H---TT-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CCCCH CS
Methyltr_RsmB-F 4 LapqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkid 72
++p+e++ +lDl ++ G +ae + ++g+vvAvd +++R++ ++ l + tn++ + a + ++
tr|A0A1X7VHW0|A0A1X7VHW0_AMPQE 25 MNPKEGDVLLDLGCGTGFHARDVAERVGETGRVVAVDPDRSRIEVAKNALDSNPPTNLQFIVASDKDFP 93
79*****************************************99999998888888775555444443 PP
>> tr|A0A1X7UE53|A0A1X7UE53_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 13.3 0.1 6e-05 0.11 16 160 .. 299 452 .. 284 486 .. 0.74
Alignments for each domain:
== domain 1 score: 13.3 bits; conditional E-value: 6e-05
S-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CCCCHHHHCC.--EEEEEEEE--CCGG CS
Methyltr_RsmB-F 16 caaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlgg.elfDriLlDaPCsgtg 93
c G +h++ lmk kg+v+ + a ++ +++nl ++v+n++++ + ++d + + + i+ +P s
tr|A0A1X7UE53|A0A1X7UE53_AMPQE 299 C-DNGTIPAHVSSLMKGKGKVIVLGATPANIRTIESNLAAISVKNVQLIPVPFPNVDPTDSMfSNAGLIICNVPSSLSS 376
3.5688889***************************************999887776554433446679999**99988 PP
GTT......T...-TTHHHH.-CC.HHCCHHHHHHHHHHHHHHHEEEEEEEEEEES---CTCTHHHHHHHHHH-TTE CS
Methyltr_RsmB-F 94 vir......r...dpdvklrrkek.diaqlaklqkellsaaidllkkgGvlvYsTCsvlveEneevieeaLkkredv 160
+++ + + ++l++ e+ d+ +l + qk ls a++ + ++ Y T s En+ ++ aL+++
tr|A0A1X7UE53|A0A1X7UE53_AMPQE 377 ILNpidyimQegdEYTAQLLKAEHiDMVALIQEQKTCLSHALKFPQ-AKYVAYFTRSSMAVENSDLVQGALSSHTAE 452
8762222212111233556665544899999999999998887655.558999999999999*********999544 PP
>> tr|A0A1X7VJI0|A0A1X7VJI0_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 15.2 0.0 1.6e-05 0.03 4 70 .. 25 91 .. 22 104 .. 0.81
Alignments for each domain:
== domain 1 score: 15.2 bits; conditional E-value: 1.6e-05
H---TT-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CCC CS
Methyltr_RsmB-F 4 LapqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDark 70
++++e++ +lDl ++ G a + ++g+vvAvd +k+R++ ++ l + tn++ + a +
tr|A0A1X7VJI0|A0A1X7VJI0_AMPQE 25 MNLKEGDVLLDLGCGTGFHARDAAGRVGETGRVVAVDPDKSRIEVAKNALDSNSPTNLQFIVASDKD 91
6899***************************************988888877777776655544444 PP
>> tr|A0A1X7VHW4|A0A1X7VHW4_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.3 0.0 0.00053 0.99 6 63 .. 26 81 .. 22 98 .. 0.79
2 ? 1.6 0.0 0.23 4.3e+02 108 138 .. 100 130 .. 96 135 .. 0.89
3 ? -1.1 0.0 1.6 2.9e+03 66 87 .. 162 183 .. 153 190 .. 0.74
Alignments for each domain:
== domain 1 score: 10.3 bits; conditional E-value: 0.00053
--TT-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEE CS
Methyltr_RsmB-F 6 pqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntiv 63
p +e++lD+ ++ G i++ + n g+v+ vd ++eR+k ++ r g +n++
tr|A0A1X7VHW4|A0A1X7VHW4_AMPQE 26 PGLNEKVLDIGCGTGRLSKVISKRVGNGGKVIGVDPDEERIKIAINE--RKGYNNIQF 81
56689************************************966554..445555554 PP
== domain 2 score: 1.6 bits; conditional E-value: 0.23
CHHCCHHHHHHHHHHHHHHHEEEEEEEEEEE CS
Methyltr_RsmB-F 108 kdiaqlaklqkellsaaidllkkgGvlvYsT 138
+d+ + k ++ l++ + d lk+gG l ++T
tr|A0A1X7VHW4|A0A1X7VHW4_AMPQE 100 TDVFHWIKDKEPLFKRIYDNLKPGGKLGFTT 130
688888899999*************998877 PP
== domain 3 score: -1.1 bits; conditional E-value: 1.6
S-CCCCHHHHCC--EEEEEEEE CS
Methyltr_RsmB-F 66 aDarkidkvlggelfDriLlDa 87
++k+++ + + fD +LlD+
tr|A0A1X7VHW4|A0A1X7VHW4_AMPQE 162 DTGQKYKELAAAIGFDVMLLDV 183
34566777777799******97 PP
>> tr|A0A1X7TQI1|A0A1X7TQI1_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.6 0.0 0.0001 0.2 4 49 .. 32 77 .. 29 111 .. 0.86
2 ? -0.8 0.0 1.3 2.5e+03 112 140 .. 113 141 .. 104 144 .. 0.78
Alignments for each domain:
== domain 1 score: 12.6 bits; conditional E-value: 0.0001
H---TT-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHH CS
Methyltr_RsmB-F 4 LapqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrv 49
L pq + +lD+ ++ G ++e +++ g+v+ +d ++eR++
tr|A0A1X7TQI1|A0A1X7TQI1_AMPQE 32 LSPQSSDSVLDMGCGTGRLCMVLSERLSDGGKVLGIDPDEERINVA 77
89****************************************9854 PP
== domain 2 score: -0.8 bits; conditional E-value: 1.3
CHHHHHHHHHHHHHHHEEEEEEEEEEES- CS
Methyltr_RsmB-F 112 qlaklqkellsaaidllkkgGvlvYsTCs 140
+ k + + ++ + + lk+gG ++T +
tr|A0A1X7TQI1|A0A1X7TQI1_AMPQE 113 HWIKNKDATFKRVYENLKPGGKFAFATIT 141
55566777788889999999999999965 PP
>> tr|A0A1X7TQB9|A0A1X7TQB9_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.8 0.0 0.00017 0.32 4 50 .. 32 77 .. 29 107 .. 0.84
2 ? -0.3 0.0 0.9 1.7e+03 111 140 .. 112 141 .. 103 144 .. 0.80
Alignments for each domain:
== domain 1 score: 11.8 bits; conditional E-value: 0.00017
H---TT-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHH CS
Methyltr_RsmB-F 4 LapqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrva 50
L pq + +lD+ ++ G ++e +++ g+v+ +d ++eR++ va
tr|A0A1X7TQB9|A0A1X7TQB9_AMPQE 32 LSPQSSDSVLDMGCGTGRLCMVLSERLSDGGKVLGIDPDEERIR-VA 77
89****************************************85.44 PP
== domain 2 score: -0.3 bits; conditional E-value: 0.9
CCHHHHHHHHHHHHHHHEEEEEEEEEEES- CS
Methyltr_RsmB-F 111 aqlaklqkellsaaidllkkgGvlvYsTCs 140
++ k + + ++ + d lk+gG ++T +
tr|A0A1X7TQB9|A0A1X7TQB9_AMPQE 112 IHWIKNKDATFKRVYDNLKPGGKFAFATIT 141
555667777788899999****99999965 PP
>> tr|A0A1X7UPR6|A0A1X7UPR6_AMPQE tRNA (guanine(37)-N1)-methyltransferase OS=Amphimedon queenslandica OX=400682 PE=3 SV
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 13.0 0.0 7.6e-05 0.14 7 101 .. 236 325 .. 230 328 .. 0.79
Alignments for each domain:
== domain 1 score: 13.0 bits; conditional E-value: 7.6e-05
-TT-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CCCCHHHHCC--EEEEEE CS
Methyltr_RsmB-F 7 qeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlggelfDriLl 85
++++ lD+ a+ G i + k+ tv+A+d n + +++++n kr +v +++ + D+r++ + + e++ +L+
tr|A0A1X7UPR6|A0A1X7UPR6_AMPQE 236 KPKDIALDMFAGVGPFS--IPA-AKKGVTVFANDLNPHSYSALVDNSKRNSVG-IKCYNLDGREFIDETR-EKVQGLLV 309
55666777777666432..333.377889********************9999.***********87777.58999999 PP
EE--CCGGGTTT-TTH CS
Methyltr_RsmB-F 86 DaPCsgtgvirrdpdv 101
P + + vi p++
tr|A0A1X7UPR6|A0A1X7UPR6_AMPQE 310 SEPSARLHVIMNLPAI 325
9998888888776665 PP
>> tr|A0A1X7TQ01|A0A1X7TQ01_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.9 0.0 0.00035 0.65 4 49 .. 32 77 .. 29 108 .. 0.86
2 ? 0.3 0.0 0.6 1.1e+03 111 140 .. 112 141 .. 107 144 .. 0.80
Alignments for each domain:
== domain 1 score: 10.9 bits; conditional E-value: 0.00035
H---TT-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHH CS
Methyltr_RsmB-F 4 LapqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrv 49
L pq + +lD+ ++ G ++e +++ g+v+ +d ++eR++
tr|A0A1X7TQ01|A0A1X7TQ01_AMPQE 32 LSPQSSNSVLDMGCGTGRLCMVLSERLSDGGKVLGIDPDAERINVA 77
89****************************************9854 PP
== domain 2 score: 0.3 bits; conditional E-value: 0.6
CCHHHHHHHHHHHHHHHEEEEEEEEEEES- CS
Methyltr_RsmB-F 111 aqlaklqkellsaaidllkkgGvlvYsTCs 140
++ k + + ++ + d lk+gG ++T +
tr|A0A1X7TQ01|A0A1X7TQ01_AMPQE 112 IHWIKNKDATFKRIYDNLKPGGKFAFATVT 141
555667777889999*********999975 PP
>> tr|A0A1X7TZT1|A0A1X7TZT1_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.8 0.0 0.00017 0.33 3 65 .. 26 86 .. 24 105 .. 0.81
2 ? -2.1 0.0 3.2 6e+03 115 145 .. 110 140 .. 96 157 .. 0.68
Alignments for each domain:
== domain 1 score: 11.8 bits; conditional E-value: 0.00017
HH---TT-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEE CS
Methyltr_RsmB-F 3 lLapqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivle 65
+L p+ ++ +lD+ ++ G +++ +++ g+++ vd ++eR+k + +++ g tn++ +
tr|A0A1X7TZT1|A0A1X7TZT1_AMPQE 26 VLSPRSNDSVLDIGCGTGRLSMILSDKLRDGGKLIGVDPDSERIKI--AAIEGKGYTNLQFMV 86
799***************999999999****************995..456666666666554 PP
== domain 2 score: -2.1 bits; conditional E-value: 3.2
HHHHHHHHHHHHHEEEEEEEEEEES---CTC CS
Methyltr_RsmB-F 115 klqkellsaaidllkkgGvlvYsTCsvlveE 145
k ++e ++ + + lk+gG + T v E
tr|A0A1X7TZT1|A0A1X7TZT1_AMPQE 110 KDKRETFKRVYNNLKPGGKFGFNTLVNGVPE 140
4566667777777777777666665555555 PP
>> tr|A0A1X7UZ07|A0A1X7UZ07_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.3 0.0 0.00013 0.24 10 87 .. 86 162 .. 80 172 .. 0.78
Alignments for each domain:
== domain 1 score: 12.3 bits; conditional E-value: 0.00013
-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CCCCHHHHCC.--EEEEEEEE CS
Methyltr_RsmB-F 10 etilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlgg.elfDriLlDa 87
++l l aa G +h+++++ + g v+Av+ +++ + +++ k+ tn+i + Dar+++k+ ++D i D+
tr|A0A1X7UZ07|A0A1X7UZ07_AMPQE 86 SKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINVAKK--RTNIIPIIEDARHPHKYRMLmGMVDTIFADV 162
5789999************************987665555544433..3456778889999998754335788888775 PP
>> tr|A0A1X7V2C8|A0A1X7V2C8_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.2 0.0 0.00014 0.26 4 52 .. 39 86 .. 36 118 .. 0.82
Alignments for each domain:
== domain 1 score: 12.2 bits; conditional E-value: 0.00014
H---TT-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHH CS
Methyltr_RsmB-F 4 LapqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaen 52
L qe + +lDl ++ G T+ ia+ +g+v+ +d ++eR+k ++
tr|A0A1X7V2C8|A0A1X7V2C8_AMPQE 39 LPIQETDVVLDLGCGTGRLTSNIAKR-VINGKVIGIDPDEERIKIAMAE 86
667999******************98.67899**********9976555 PP
>> tr|A0A1X7V5I2|A0A1X7V5I2_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.6 0.0 0.0001 0.19 59 115 .. 29 85 .. 11 103 .. 0.74
Alignments for each domain:
== domain 1 score: 12.6 bits; conditional E-value: 0.0001
-SEEEEES-CCCCHHHHCC--EEEEEEEE--CCGGGTTT-TTHHHH.-CCHHCCHHH CS
Methyltr_RsmB-F 59 tntivleaDarkidkvlggelfDriLlDaPCsgtgvirrdpdvklrrkekdiaqlak 115
+++ ++++D++ +++ e ++++ lD PC + + ++ ++ k++ l+k
tr|A0A1X7V5I2|A0A1X7V5I2_AMPQE 29 ESAVIVRYDGSTNNRDAIIENIEKLFLDNPCKEELLKTATNILQAVKNAKQVRDLNK 85
57899*******99999999***********98776666554444444444444443 PP
>> tr|A0A1X7SEL2|A0A1X7SEL2_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 9.7 0.0 0.0008 1.5 26 75 .. 4 53 .. 1 61 [. 0.83
2 ? 0.4 0.0 0.54 1e+03 108 143 .. 58 93 .. 56 103 .. 0.87
Alignments for each domain:
== domain 1 score: 9.7 bits; conditional E-value: 0.0008
HHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CCCCHHHH CS
Methyltr_RsmB-F 26 iaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvl 75
+++++ ++g+v+Avd n+eR++ +e + ++++ + + aD+ +++
tr|A0A1X7SEL2|A0A1X7SEL2_AMPQE 4 LSKIVGEEGKVIAVDPNNERIELAKEVNSAINIEYLVASDADIPTDQQYH 53
6788999******************9999999998888888876666655 PP
== domain 2 score: 0.4 bits; conditional E-value: 0.54
CHHCCHHHHHHHHHHHHHHHEEEEEEEEEEES---C CS
Methyltr_RsmB-F 108 kdiaqlaklqkellsaaidllkkgGvlvYsTCsvlv 143
+d+++ k ++ +++ + +l++gG+ ++T s ++
tr|A0A1X7SEL2|A0A1X7SEL2_AMPQE 58 TDVIHWIKDKESMFKKVYCSLRPGGTFGFTTFSGEP 93
5888889999999*************9999988776 PP
>> tr|A0A1X7U326|A0A1X7U326_AMPQE tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A OS=Amphimedon que
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.4 0.0 0.00024 0.46 2 101 .. 97 196 .. 96 234 .. 0.84
Alignments for each domain:
== domain 1 score: 11.4 bits; conditional E-value: 0.00024
HHH---TT-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SE.EEEES-CCCCHHHHCC-- CS
Methyltr_RsmB-F 2 llLapqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtnt.ivleaDarkidkvlggel 79
+ L+++++ t+ + ++ G+ ia +++ g+++ + +++R + ++ + g+ ++ +v + D+ + + ++
tr|A0A1X7U326|A0A1X7U326_AMPQE 97 MQLELRPGSTVCECGTGSGSLSHAIARTIAPDGHLFTFEFHEKRSQIAKDEFEAHGLSHIvTVKCSDVCQE-GFGLEDR 174
568899999999999999999999****************************9999997526778888887.555568* PP
EEEEEEEE--CCGGGTTT-TTH CS
Methyltr_RsmB-F 80 fDriLlDaPCsgtgvirrdpdv 101
+D + lD P + + + ++
tr|A0A1X7U326|A0A1X7U326_AMPQE 175 VDAVFLDLPNPWEAISSAKTAI 196
*******997655555555554 PP
>> tr|A0A1X7VMP2|A0A1X7VMP2_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.7 0.0 0.00038 0.72 23 77 .. 385 440 .. 382 452 .. 0.85
Alignments for each domain:
== domain 1 score: 10.7 bits; conditional E-value: 0.00038
HHHHHHH.TTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CCCCHHHHCC CS
Methyltr_RsmB-F 23 Tthiael.mknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlgg 77
T++ ++l m n g+vv + +eR + ++++lk Lg+ + + D+r++ +v g
tr|A0A1X7VMP2|A0A1X7VMP2_AMPQE 385 TAYAMDLlMPNIGEVVGGSVREERFDILENTLKNLGMDEKYQWYLDLRRFGTVPHG 440
888887779****************************************9888766 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (200 nodes)
Target sequences: 43435 (14716620 residues searched)
Passed MSV filter: 1384 (0.0318637); expected 868.7 (0.02)
Passed bias filter: 904 (0.0208127); expected 868.7 (0.02)
Passed Vit filter: 76 (0.00174974); expected 43.4 (0.001)
Passed Fwd filter: 23 (0.000529527); expected 0.4 (1e-05)
Initial search space (Z): 43435 [actual number of targets]
Domain search space (domZ): 23 [number of targets reported over threshold]
# CPU time: 0.29u 0.01s 00:00:00.30 Elapsed: 00:00:00.10
# Mc/sec: 29433.24
//
[ok]