# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/Methyltr_RsmB-F.hmm.txt
# target sequence database: proteomes/Monosiga_brevicollis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Methyltr_RsmB-F [M=200]
Accession: PF01189.16
Description: 16S rRNA methyltransferase RsmB/F
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.2e-73 246.1 0.1 3.9e-73 244.4 0.0 1.8 2 tr|A9UX73|A9UX73_MONBE Predicted protein OS=Monosiga brevico
1.8e-41 141.1 0.0 1.7e-40 137.9 0.0 2.0 1 tr|A9UV72|A9UV72_MONBE Predicted protein (Fragment) OS=Monos
2.1e-40 137.6 0.0 2.8e-40 137.1 0.0 1.1 1 tr|A9UWA2|A9UWA2_MONBE Predicted protein OS=Monosiga brevico
5e-33 113.5 0.0 4.2e-32 110.5 0.0 2.2 1 tr|A9V6W9|A9V6W9_MONBE Predicted protein OS=Monosiga brevico
1.1e-29 102.5 0.0 1.5e-29 102.2 0.0 1.2 1 tr|A9V855|A9V855_MONBE Predicted protein OS=Monosiga brevico
1.1e-16 60.2 0.0 2e-15 56.1 0.0 2.3 2 tr|A9V709|A9V709_MONBE Predicted protein OS=Monosiga brevico
2e-07 29.9 0.0 3.8e-07 29.0 0.0 1.4 1 tr|A9VAA8|A9VAA8_MONBE Predicted protein (Fragment) OS=Monos
0.0043 15.8 0.0 0.015 14.0 0.0 1.8 2 tr|A9UXY5|A9UXY5_MONBE Predicted protein OS=Monosiga brevico
------ inclusion threshold ------
0.014 14.1 0.0 0.025 13.2 0.0 1.5 1 tr|A9VE22|A9VE22_MONBE Predicted protein OS=Monosiga brevico
0.018 13.7 0.0 0.028 13.1 0.0 1.3 1 tr|A9V6Y8|A9V6Y8_MONBE Methyltransferase OS=Monosiga brevico
0.024 13.3 0.0 0.058 12.1 0.0 1.7 1 tr|A9V3Q3|A9V3Q3_MONBE Putative tRNA (cytidine(32)/guanosine
Domain annotation for each sequence (and alignments):
>> tr|A9UX73|A9UX73_MONBE Predicted protein OS=Monosiga brevicollis OX=81824 GN=18734 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.8 0.4 1.2 1e+03 144 190 .. 48 93 .. 46 96 .. 0.72
2 ! 244.4 0.0 4.6e-76 3.9e-73 1 200 [] 245 453 .. 245 453 .. 0.93
Alignments for each domain:
== domain 1 score: -1.8 bits; conditional E-value: 1.2
TCTHHHHHHHHHH-TTEEEESSBSTTSTTSSECEECT-EEE-TTTTS CS
Methyltr_RsmB-F 144 eEneevieeaLkkredvelvetelsepkglklgeeagtlrllPhten 190
+E+e ++e+a ++ e +e ++ +l e + +++ ++++ +lP ++
tr|A9UX73|A9UX73_MONBE 48 DEDELAVERAARELEAAEEEDARLAEEELQTN-IAESKRFVLPSGQE 93
79999999999999999999998888544444.44446888887665 PP
== domain 2 score: 244.4 bits; conditional E-value: 4.6e-76
HHHH---TT-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CCCCHHHHCC--EEEEEEEE CS
Methyltr_RsmB-F 1 allLapqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlggelfDriLlDa 87
+++L p ++e++lD++aaPGgKTth+a++mkn+g vv +d nk R+k++ n++rLg+tnt ++++D+r+++kvlgg fDr+LlDa
tr|A9UX73|A9UX73_MONBE 245 VMALSPLPNEKVLDMAAAPGGKTTHMAAMMKNTGMVVVNDFNKARTKSLFGNIHRLGCTNTVICNYDGREFPKVLGG--FDRVLLDA 329
589*************************************************************************9..******** PP
--CCGGGTTT-TTHHHH.-CCHHCCHHHHHHHHHHHHHHHE....EEEEEEEEEES---CTCTHHHHHHHHHH-TTEEEESSBSTTS CS
Methyltr_RsmB-F 88 PCsgtgvirrdpdvklrrkekdiaqlaklqkellsaaidll....kkgGvlvYsTCsvlveEneevieeaLkkredvelvetelsep 170
PCsg gvi +dp +k +++e d++++++lqkel+ +aid++ k+gG++vYsTCs+ v+Ene v+++aL+kr +v+lv+t l +
tr|A9UX73|A9UX73_MONBE 330 PCSGSGVIAKDPGAKNNKSEDDFMRCSTLQKELILSAIDSVdansKTGGFIVYSTCSIMVDENESVVDYALRKR-NVKLVDTGLDFG 415
**************************************************************************.99***9965432 PP
TTSSECEEC...........T-EEE-TTTTS.-SEEEEEEE CS
Methyltr_RsmB-F 171 kglklgeea...........gtlrllPhtenkdgffiaklk 200
+ g ++ +t+r++Ph++n+dgf++akl+
tr|A9UX73|A9UX73_MONBE 416 ---RPGFTNfrgkrfhptleKTRRYYPHAHNMDGFYVAKLQ 453
...222222334568899999******************96 PP
>> tr|A9UV72|A9UV72_MONBE Predicted protein (Fragment) OS=Monosiga brevicollis OX=81824 GN=36363 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 137.9 0.0 2e-43 1.7e-40 2 200 .] 46 305 .. 45 305 .. 0.89
Alignments for each domain:
== domain 1 score: 137.9 bits; conditional E-value: 2e-43
HHH---TT-EEEECS-TT-HHHHHHHHHTT......TTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CCCCHHHHCC..... CS
Methyltr_RsmB-F 2 llLapqeeetilDlcaaPGgKTthiaelmk......nkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlgg..... 77
llL+ ++++++lD+caaPG+KT+ i e ++ ++g vvA+da+++R +++ krL +v++ Da+ ++ +
tr|A9UV72|A9UV72_MONBE 46 LLLDVKPNQRVLDMCAAPGSKTAQIIEGVSatdetvPRGLVVANDADSKRCYMLVHQSKRLQSPVFMVVNQDASIFPALFLDskggn 132
5899********************98854311111145789***********************************99988778899 PP
.....--EEEEEEEE--CCGGGTTT-TTHHHH.-CCHHCCHHHHHHHHHHHHHHHEEEEEEEEEEES---CTCTHHHHHHHHHH-TT CS
Methyltr_RsmB-F 78 .....elfDriLlDaPCsgtgvirrdpdvklrrkekdiaqlaklqkellsaaidllkkgGvlvYsTCsvlveEneevieeaLkkred 159
+fDr+L D+PCsg g++r++p + + ++ d + l+ lq ++l i+ll gG +vYsTCs+++ Ene+v++eaL+++e
tr|A9UV72|A9UV72_MONBE 133 srrrkLKFDRVLADVPCSGDGTMRKNPGIWRKWNPFDATGLHPLQYRILRRGIQLLEDGGLIVYSTCSLNPIENEAVVAEALRQHEG 219
*999889**********************667799**************************************************86 PP
.EEEESSBSTTS.TTSSECEEC...........................................T-EEE-TTTTS.-SEEEEEEE CS
Methyltr_RsmB-F 160 .velvetelsep.kglklgeea...........................................gtlrllPhtenkdgffiaklk 200
velv+++ + p + g ++ lrllPh++++ gff+a l+
tr|A9UV72|A9UV72_MONBE 220 lVELVDVSDQLPgLVRDPGMTSwklmdrdcnwysstsemrpdlrkrfpdsmnpptaeeaakfhleRCLRLLPHAQDTGGFFVAVLR 305
478888743332134455666699999***********************************999999**************9885 PP
>> tr|A9UWA2|A9UWA2_MONBE Predicted protein OS=Monosiga brevicollis OX=81824 GN=24394 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 137.1 0.0 3.4e-43 2.8e-40 2 164 .. 106 274 .. 105 279 .. 0.93
Alignments for each domain:
== domain 1 score: 137.1 bits; conditional E-value: 3.4e-43
HHH---TT-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CCCCHHHHCC.......--EE CS
Methyltr_RsmB-F 2 llLapqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlgg.......elfD 81
+Lap+++ ++lD+caaPGgKT+hi+ l++ +gtvvA++++ +R+ +++e + Lg++n+ v ++Da+k + + g + fD
tr|A9UWA2|A9UWA2_MONBE 106 RALAPEPGMRVLDMCAAPGGKTSHISLLLRGTGTVVALERSPKRAAQLKEWVASLGCHNVEVHQMDATKCLEGSKGknskfplASFD 192
589******************************************************************988777779999999*** PP
EEEEEE--CCGGGTTT-TTHHHH.-CCHHCCHHHHHHHHHHHHHHHEEEEEEEEEEES---CTCTHHHHHHHHHH-TTEEEES CS
Methyltr_RsmB-F 82 riLlDaPCsgtgvirrdpdvklrrkekdiaqlaklqkellsaaidllkkgGvlvYsTCsvlveEneevieeaLkkredvelve 164
+LlDaPCsg+g r + v + +++ +a+ q++ll+ a++ l++gG lv+sTCs+ Ene+ ++ aLk+ ++ lv+
tr|A9UWA2|A9UWA2_MONBE 193 AVLLDAPCSGLGQRPRVR-VDCPLRVAELEDYASYQRKLLQVAVAALRPGGRLVFSTCSLFAGENEANVAWALKAMPELTLVD 274
***********9755543.445667899***********************************************99999876 PP
>> tr|A9V6W9|A9V6W9_MONBE Predicted protein OS=Monosiga brevicollis OX=81824 GN=38306 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 110.5 0.0 5e-35 4.2e-32 2 199 .. 165 425 .. 164 426 .. 0.87
Alignments for each domain:
== domain 1 score: 110.5 bits; conditional E-value: 5e-35
HHH---TT-EEEECS-TT-HHHHHHHHHTTTTSE....EEEEESSCCCHHHHHHHHHHTT..--SEEEEES-CCCCHHHHCC..... CS
Methyltr_RsmB-F 2 llLapqeeetilDlcaaPGgKTthiaelmknkgt....vvAvdankeRlkrvaenlkrLg..vtntivleaDarkidkvlgg..... 77
+L+ +++ ++lD+ca+PG+KTt +e ++ +g+ v+A+d++++R+ +++ l Lg ++++ v++ a+k+++ + +
tr|A9V6W9|A9V6W9_MONBE 165 AFLNIEPHHRVLDMCASPGSKTTQALEALHAQGNasgfVMANDVDAKRAYILVRRLAPLGpaCQKLVVTQHKAQKYPSLSHEredry 251
57999******************999887665433333*********************9556799999999999999998899999 PP
..--EEEEEEEE--CCGGGTTT-TTHHHH..-CCHHCCHHHHHHHHHHHHHHHEEEEEEEEEEES---CTCTHHHHHHHHHH-.TTE CS
Methyltr_RsmB-F 78 ..elfDriLlDaPCsgtgvirrdpdvklrr.kekdiaqlaklqkellsaaidllkkgGvlvYsTCsvlveEneevieeaLkkr.edv 160
fDri+ D+PC g g++r+ pd+ +rr ++ + l++lq ++ + ll++gG++vYsTC+ ++ E+e+v++++L+k v
tr|A9V6W9|A9V6W9_MONBE 252 lrGSFDRIICDVPCCGDGTLRKSPDM-WRRwHPGFAIGLHTLQLQIAMRGLSLLRPGGIMVYSTCTFNPLEDEAVVAALLQKCgGAV 337
9889**********************.66626666778*******************************************972578 PP
EEESSBSTTSTTS.SECEEC................................................T-EEE-TTTTS.-SEEEEE CS
Methyltr_RsmB-F 161 elvetelsepkgl.klgeea................................................gtlrllPhtenkdgffiak 198
elv+ + +p+ + + g+ + +r++Ph +++ gff+a
tr|A9V6W9|A9V6W9_MONBE 338 ELVDCSGRHPDLArRPGVYSwkvydddmrefpdfaatqhdsvspntrkimrptmfppspdvaeslcleRCMRFYPHLQDTGGFFVAV 424
999997766654413444448999999999999999999999999999999999999999999999988899999999999999998 PP
E CS
Methyltr_RsmB-F 199 l 199
l
tr|A9V6W9|A9V6W9_MONBE 425 L 425
7 PP
>> tr|A9V855|A9V855_MONBE Predicted protein OS=Monosiga brevicollis OX=81824 GN=28431 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 102.2 0.0 1.8e-32 1.5e-29 2 160 .. 120 282 .. 119 319 .. 0.84
Alignments for each domain:
== domain 1 score: 102.2 bits; conditional E-value: 1.8e-32
HHH---TT-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHH.....HHTT--SEEEEES-CCCCHHHHCC--EEEE CS
Methyltr_RsmB-F 2 llLapqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenl.....krLgvtntivleaDarkidkvlggelfDri 83
l+L+ q+++t+lDlcaaPGgK +ae ++ +g++ A+++ + R +r+++ + +r+ + + v+ D+++ + lg+e++ +i
tr|A9V855|A9V855_MONBE 120 LALNVQPGDTVLDLCAAPGGKALILAEQLDGRGHIQANERASGRQSRLQRVMidylpERIRHKGVRVTGLDGTRA-RALGKEQYSKI 205
78*************************************98766555554332224589999999********99.889999***** PP
EEEE--CCGGGTTT-TTHHHH.-CCHHCCHHHHHHHHHHHHHHHEEEEEEEEEEES---CTCTHHHHHHHHHH-TTE CS
Methyltr_RsmB-F 84 LlDaPCsgtgvirrdpdvklrrkekdiaqlaklqkellsaaidllkkgGvlvYsTCsvlveEneevieeaLkkredv 160
L+DaPCs+ + d d +++ i + +k+q +ll aa++ lk+gG++vYsTC++ En v+ +++k+ +
tr|A9V855|A9V855_MONBE 206 LVDAPCSSDRHVLMDLDELAVWSPTRIRANSKRQIQLLWAAAQALKPGGTVVYSTCALSDMENDDVVRTIIKRSGGT 282
*******998888887777899************************************************9987554 PP
>> tr|A9V709|A9V709_MONBE Predicted protein OS=Monosiga brevicollis OX=81824 GN=38325 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.4 0.0 0.13 1.1e+02 31 72 .. 7 48 .. 2 57 .. 0.86
2 ! 56.1 0.0 2.3e-18 2e-15 71 199 .. 141 281 .. 123 282 .. 0.78
Alignments for each domain:
== domain 1 score: 1.4 bits; conditional E-value: 0.13
TTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CCCCH CS
Methyltr_RsmB-F 31 knkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkid 72
+g v+ vd+++eRl + + l++ +++ ++ +D+ +
tr|A9V709|A9V709_MONBE 7 TGQGSVTGVDVQRERLAACRNLLQKYASNKVRLFLGDGCTFA 48
56899***************9999999999999999987765 PP
== domain 2 score: 56.1 bits; conditional E-value: 2.3e-18
CHHHHCC--EEEEEEEE--CCGGGTTT-TTH.HH..H.......-CCHHCCHHHHHHHHHHHHHHHEEEEEEEEEEES---CTCTHH CS
Methyltr_RsmB-F 71 idkvlggelfDriLlDaPCsgtgvirrdpdv.kl..rr......kekdiaqlaklqkellsaaidllkkgGvlvYsTCsvlveEnee 148
++ +++l+D++L+Da C+ g i++ + ++ + +++ i+ql +lq+ ll+ + l++gG+lvYsTCs ne
tr|A9V709|A9V709_MONBE 141 PPVQATDQLYDKVLVDAECTHDGSIKHLTKFdRWgwSTfeqrffDPTRISQLETLQRGLLQNGFRRLREGGTLVYSTCSFSHRQNED 227
44455669***************9987665433322322222446889*************************************** PP
HHHHHHHH-TTEEEESSBSTT.S..TTSSECEECT-EEE-TTTTS.-SEEEEEE CS
Methyltr_RsmB-F 149 vieeaLkkredvelvetelse.p..kglklgeeagtlrllPhtenkdgffiakl 199
++ +L +++ ++l + + + + + +a l++ P + + g+f+a++
tr|A9V709|A9V709_MONBE 228 IVQWLLDHEPGAQLLSCKGMAaFpaAAFHPLATADVLKFSPVATATSGLFVARF 281
*************999864441200233333445899**************997 PP
>> tr|A9VAA8|A9VAA8_MONBE Predicted protein (Fragment) OS=Monosiga brevicollis OX=81824 GN=34220 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 29.0 0.0 4.6e-10 3.8e-07 4 88 .. 1036 1120 .. 1033 1125 .. 0.95
Alignments for each domain:
== domain 1 score: 29.0 bits; conditional E-value: 4.6e-10
H---TT-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CCCCHHHHCC--EEEEEEEE- CS
Methyltr_RsmB-F 4 LapqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlggelfDriLlDaP 88
L++ + ++l+ ++ G+ T +a + ++g+v+ d +++R++ + r g+tn++v +aDa+ +d + +e +D + D P
tr|A9VAA8|A9VAA8_MONBE 1036 LDLCAGSRVLETGTGSGSLTHALARAVGPQGRVFSFDFHQQRVEIARDEFARHGLTNVQVAHADATMPDAWGLHEEVDAVFFDLP 1120
6777788999999**********************************************************************98 PP
>> tr|A9UXY5|A9UXY5_MONBE Predicted protein OS=Monosiga brevicollis OX=81824 GN=36815 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.0 0.0 1.8e-05 0.015 9 84 .. 126 197 .. 122 201 .. 0.90
2 ? -1.4 0.0 0.96 8.1e+02 114 134 .. 205 225 .. 198 228 .. 0.81
Alignments for each domain:
== domain 1 score: 14.0 bits; conditional E-value: 1.8e-05
T-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CCCCHHHHCC--EEEEE CS
Methyltr_RsmB-F 9 eetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlggelfDriL 84
+ +ilDl ++ G+ T ++ae +k+t+ + ++++ + + + + g +n++v++ D++ ++ g +Dr++
tr|A9UXY5|A9UXY5_MONBE 126 GLRILDLGCGWGSLTLWLAEH-YPKATIHSISNSRTQKQYIDDQCRAKGYKNVTVFTSDINDFEA-EG--NYDRVM 197
558*****************9.899***********************************99943.34..488885 PP
== domain 2 score: -1.4 bits; conditional E-value: 0.96
HHHHHHHHHHHHHHEEEEEEE CS
Methyltr_RsmB-F 114 aklqkellsaaidllkkgGvl 134
+k ++l++ + + lk+gG+l
tr|A9UXY5|A9UXY5_MONBE 205 MKNYEKLMNKITNWLKPGGFL 225
45567999***********98 PP
>> tr|A9VE22|A9VE22_MONBE Predicted protein OS=Monosiga brevicollis OX=81824 GN=13022 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 13.2 0.0 3e-05 0.025 10 86 .. 149 224 .. 142 248 .. 0.78
Alignments for each domain:
== domain 1 score: 13.2 bits; conditional E-value: 3e-05
-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHH.HHHTT--SEEEEES-CCCCHHHHCC.--EEEEEEE CS
Methyltr_RsmB-F 10 etilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaen.lkrLgvtntivleaDarkidkvlgg.elfDriLlD 86
++l l aa G +h+a+l+ + g v+Av+ +++ + +++ kr tn+i + Dar+++k+ ++D i D
tr|A9VE22|A9VE22_MONBE 149 SKVLYLGAASGTTVSHVADLVGKDGLVYAVEFSHRSGRDLINMaKKR---TNVIPIIEDARHPHKYRMLvPMVDCIFAD 224
6789999************************9876655555430344...34556778999998875543566666665 PP
>> tr|A9V6Y8|A9V6Y8_MONBE Methyltransferase OS=Monosiga brevicollis OX=81824 GN=33702 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 13.1 0.0 3.3e-05 0.028 5 81 .. 151 226 .. 147 238 .. 0.86
Alignments for each domain:
== domain 1 score: 13.1 bits; conditional E-value: 3.3e-05
---TT-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--.SEEEEES-CCCCHHHHCC--EE CS
Methyltr_RsmB-F 5 apqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvt.ntivleaDarkidkvlggelfD 81
+++++lD+ ++ Gg t ia + ++ ++ + +n++ ++r ++ k+Lg+ ++++D ++++ ++fD
tr|A9V6Y8|A9V6Y8_MONBE 151 GAGKGDRVLDVGCGIGGPLTNIARFEGPEVDLTGITINQHQVSRGNTRCKQLGLShRCRLVRGDFTQMPFKD--AVFD 226
566789************************************************9557899***99986433..3455 PP
>> tr|A9V3Q3|A9V3Q3_MONBE Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Monosiga brevicollis OX=
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.1 0.0 6.9e-05 0.058 7 43 .. 40 80 .. 38 157 .. 0.77
Alignments for each domain:
== domain 1 score: 12.1 bits; conditional E-value: 6.9e-05
-TT-EEEECS-TT-HHHHHHHHHTTTT....SEEEEEESSC CS
Methyltr_RsmB-F 7 qeeetilDlcaaPGgKTthiaelmknk....gtvvAvdank 43
++ e+++DlcaaPG+ +++ ++++ ++vAvd ++
tr|A9V3Q3|A9V3Q3_MONBE 40 RNVERVVDLCAAPGSWSQVLSQKLRPTendrVKIVAVDLQA 80
57799***********9999986544311115688888765 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (200 nodes)
Target sequences: 9188 (5511963 residues searched)
Passed MSV filter: 301 (0.0327601); expected 183.8 (0.02)
Passed bias filter: 211 (0.0229647); expected 183.8 (0.02)
Passed Vit filter: 21 (0.00228559); expected 9.2 (0.001)
Passed Fwd filter: 11 (0.00119721); expected 0.1 (1e-05)
Initial search space (Z): 9188 [actual number of targets]
Domain search space (domZ): 11 [number of targets reported over threshold]
# CPU time: 0.12u 0.00s 00:00:00.12 Elapsed: 00:00:00.04
# Mc/sec: 27559.81
//
[ok]