# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/Methyltr_RsmB-F.hmm.txt # target sequence database: proteomes/Mus_musculus.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Methyltr_RsmB-F [M=200] Accession: PF01189.16 Description: 16S rRNA methyltransferase RsmB/F Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.2e-84 280.9 0.0 9.3e-84 280.3 0.0 1.3 1 sp|Q922K7|NOP2_MOUSE Probable 28S rRNA (cytosine-C(5))-met 1.2e-45 155.9 0.0 2.4e-45 155.0 0.0 1.5 1 sp|Q7TS68|NSUN6_MOUSE Putative methyltransferase NSUN6 OS=M 1.4e-38 132.9 0.0 1.6e-37 129.4 0.0 2.2 1 sp|Q1HFZ0|NSUN2_MOUSE tRNA (cytosine(34)-C(5))-methyltransf 3.5e-30 105.4 0.0 5.6e-30 104.8 0.0 1.3 1 sp|Q8K4F6|NSUN5_MOUSE Probable 28S rRNA (cytosine-C(5))-met 5.8e-29 101.5 0.0 7.7e-29 101.1 0.0 1.2 1 sp|Q8CCT7|NSUN3_MOUSE tRNA (cytosine(34)-C(5))-methyltransf 3.8e-07 30.2 1.0 2.1e-06 27.9 1.0 2.1 1 sp|Q14AW5|NSUN7_MOUSE Putative methyltransferase NSUN7 OS=M 3.3e-06 27.2 0.0 5.9e-06 26.4 0.0 1.4 1 sp|Q9DCL4|MET15_MOUSE Probable methyltransferase-like prote 0.0016 18.5 0.0 0.0028 17.6 0.0 1.4 1 sp|Q921L7|HEMK1_MOUSE HemK methyltransferase family member ------ inclusion threshold ------ 0.062 13.2 0.0 0.098 12.6 0.0 1.3 1 tr|Q8BML3|Q8BML3_MOUSE Glycosyltransferase 28 domain-contain 0.11 12.5 0.0 0.16 11.9 0.0 1.2 1 sp|Q8K1A0|METL5_MOUSE Methyltransferase-like protein 5 OS=M 0.11 12.4 0.0 0.19 11.7 0.0 1.4 1 sp|P35550|FBRL_MOUSE rRNA 2'-O-methyltransferase fibrillar 0.13 12.2 0.0 0.24 11.3 0.0 1.5 1 sp|Q80WS3|FBLL1_MOUSE rRNA/tRNA 2'-O-methyltransferase fibr 0.14 12.0 0.0 0.34 10.8 0.0 1.6 2 tr|Q8CBC7|Q8CBC7_MOUSE Putative tRNA (cytidine(32)/guanosine 0.2 11.6 0.0 20 5.1 0.0 2.2 2 sp|Q91WU5|AS3MT_MOUSE Arsenite methyltransferase OS=Mus mus Domain annotation for each sequence (and alignments): >> sp|Q922K7|NOP2_MOUSE Probable 28S rRNA (cytosine-C(5))-methyltransferase OS=Mus musculus OX=10090 GN=Nop2 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 280.3 0.0 5.9e-87 9.3e-84 1 200 [] 362 570 .. 362 570 .. 0.95 Alignments for each domain: == domain 1 score: 280.3 bits; conditional E-value: 5.9e-87 HHHH---TT-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CCCCHHHHCC--EEEEEEEE-- CS Methyltr_RsmB-F 1 allLapqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlggelfDriLlDaPC 89 +++Lapqe+e+ilD+c+aPGgKT++ia+lmkn+g+++A+dan+ Rlk+v+ nl+rLgvtnti++++D+r+++kv+gg fDr+LlDaPC sp|Q922K7|NOP2_MOUSE 362 VMALAPQEHERILDMCCAPGGKTSYIAQLMKNTGVILANDANADRLKSVVGNLHRLGVTNTIISHYDGRQFPKVVGG--FDRVLLDAPC 448 589*************************************************************************9..********** PP CCGGGTTT-TTHHHH.-CCHHCCHHHHHHHHHHHHHHHE....EEEEEEEEEES---CTCTHHHHHHHHHH-TTEEEESSBSTTSTTSS CS Methyltr_RsmB-F 90 sgtgvirrdpdvklrrkekdiaqlaklqkellsaaidll....kkgGvlvYsTCsvlveEneevieeaLkkredvelvetelsepkglk 174 sgtgvi++dp+vk++++ekdi+++a+lqkell +aid++ k+gG+lvY+TCs++veEne+v+++aLkkr +v+lv+t l +++ sp|Q922K7|NOP2_MOUSE 449 SGTGVISKDPAVKTNKDEKDIQRCAHLQKELLLSAIDSVnaasKTGGYLVYCTCSITVEENEWVVDYALKKR-NVRLVPTGLDFGQEGF 536 ***********************************************************************9.9******665544444 PP ECEEC........T-EEE-TTTTS.-SEEEEEEE CS Methyltr_RsmB-F 175 lgeea........gtlrllPhtenkdgffiaklk 200 + +a +t+r++Pht+n+dgffiak+k sp|Q922K7|NOP2_MOUSE 537 TRFQArrfhptlrSTRRFYPHTHNMDGFFIAKFK 570 44444899************************96 PP >> sp|Q7TS68|NSUN6_MOUSE Putative methyltransferase NSUN6 OS=Mus musculus OX=10090 GN=Nsun6 PE=2 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 155.0 0.0 1.5e-48 2.4e-45 2 166 .. 228 400 .. 227 464 .. 0.88 Alignments for each domain: == domain 1 score: 155.0 bits; conditional E-value: 1.5e-48 HHH---TT-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CCCCHHHHCC...........- CS Methyltr_RsmB-F 2 llLapqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlgg...........e 78 +L+pq++e+ilD+caaPGgKTth a+lm++kg+v+A+d+ ++++++++n + Lg++++ ++ Da+k k + e sp|Q7TS68|NSUN6_MOUSE 228 HVLDPQPGEKILDMCAAPGGKTTHTAALMQDKGEVIALDKILTKVNKLKQNASLLGLHSIRAFCFDATKALKLDTTdgieggppflpE 315 68*****************************************************************997665444467889****** PP -EEEEEEEE--CCGGGTTT-TTHHHH.-CCHHCCHHHHHHHHHHHHHHHEEEEEEEEEEES---CTCTHHHHHHHHHH-TTEEEESSB CS Methyltr_RsmB-F 79 lfDriLlDaPCsgtgvirrdpdvklrrkekdiaqlaklqkellsaaidllkkgGvlvYsTCsvlveEneevieeaLkkredvelvete 166 fDri+lDaPCsg+g ++p++ + + k++++++ lq++ll+ a++llk+gGvlvYsTC+++++Enee+++ aL++ + +l++ e sp|Q7TS68|NSUN6_MOUSE 316 SFDRIILDAPCSGMG---QRPNMACTWTLKEVTSYQPLQRKLLHVAVQLLKPGGVLVYSTCTITLAENEEQVAWALRTFPCLQLQPQE 400 *************98...689999999999************************************************9999998875 PP >> sp|Q1HFZ0|NSUN2_MOUSE tRNA (cytosine(34)-C(5))-methyltransferase OS=Mus musculus OX=10090 GN=Nsun2 PE=1 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 129.4 0.0 1e-40 1.6e-37 2 199 .. 170 427 .. 169 428 .. 0.89 Alignments for each domain: == domain 1 score: 129.4 bits; conditional E-value: 1e-40 HHH---TT-EEEECS-TT-HHHHHHHHHTT.......TTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CCCCHHHHCC..... CS Methyltr_RsmB-F 2 llLapqeeetilDlcaaPGgKTthiaelmk.......nkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlgg..... 77 llL+ +++ +ilD+caaPG+KTt + e+++ ++g v+A+d++++R +++ krL+ ++v++ Da+ i++ + + sp|Q1HFZ0|NSUN2_MOUSE 170 LLLNVEPHHKILDMCAAPGSKTTQLIEMLHadmsvpfPEGFVIANDVDNKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLTVDvdgrk 257 58999**********************976222233347899************************************9998888899 PP ..--EEEEEEEE--CCGGGTTT-TTHHHH.-CCHHCCHHHHHHHHHHHHHHHEEEEEEEEEEES---CTCTHHHHHHHHHH-T.TEEE CS Methyltr_RsmB-F 78 ..elfDriLlDaPCsgtgvirrdpdvklrrkekdiaqlaklqkellsaaidllkkgGvlvYsTCsvlveEneevieeaLkkre.dvel 162 ++DriL D+PCsg g++r++ dv + + + ql+ lq ++ + +++l +gG +vYsTCs+++ E+e+vi+++L+k e el sp|Q1HFZ0|NSUN2_MOUSE 258 eiLFYDRILCDVPCSGDGTMRKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPVEDEAVIAALLEKSEgALEL 345 87789*********************6666888999*******************************************998724577 PP ESSBSTTS.TTSSECEEC............................................T-EEE-TTTTS.-SEEEEEE CS Methyltr_RsmB-F 163 vetelsep.kglklgeea............................................gtlrllPhtenkdgffiakl 199 +++++ p + g+ + lr+lPh++n+ gff+a l sp|Q1HFZ0|NSUN2_MOUSE 346 ADVSAELPgLKWMPGVSQwkvmtrdgqwfadwhevpqgrhtqirptmfpptdleklqamhleRCLRILPHHQNTGGFFVAVL 427 77744432134445555599999*************************************9999***************987 PP >> sp|Q8K4F6|NSUN5_MOUSE Probable 28S rRNA (cytosine-C(5))-methyltransferase OS=Mus musculus OX=10090 GN=Nsun5 PE=2 SV= # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 104.8 0.0 3.5e-33 5.6e-30 1 199 [. 219 422 .. 219 423 .. 0.81 Alignments for each domain: == domain 1 score: 104.8 bits; conditional E-value: 3.5e-33 HHHH---TT-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CCCCHHHHCC.--EEEEEEEE CS Methyltr_RsmB-F 1 allLapqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlgg.elfDriLlDa 87 a+lL p ++ +++D+caaPG KT++ia+l+kn+g+++A d++++Rl ++a+ + r gv + e D ++ +++ iLlD sp|Q8K4F6|NSUN5_MOUSE 219 AMLLSPPPGSHVIDACAAPGNKTSYIAALLKNQGKIFAFDQDAKRLAAMATLVARAGVSCCELAEKDFLTVSPSDQRySQVQYILLDP 306 689********************************************************99******8766433333478******** PP --CCGGGTTT-TTHHHH.-C..CHHCCHHHHHHHHHHHHHHHEEEEEEEEEEES---CTCTHHHHHHHHHH-T.TEEEESS..BS.TT CS Methyltr_RsmB-F 88 PCsgtgvirrdpdvklrrke..kdiaqlaklqkellsaaidllkkgGvlvYsTCsvlveEneevieeaLkkre.dvelvet..el.se 169 Csg g+++r+ + + + ++ + +++la q++ l a+ + lvYsTCs+ eEne v++eaL+++ +l ++ + + sp|Q8K4F6|NSUN5_MOUSE 307 SCSGSGMLSRQLEEHGEGTPskERLQALAGFQQRALCHALRF-PSLQRLVYSTCSLCQEENEDVVQEALQHNSgTFRLAPVlpTWpHR 393 **********99988776552167899999888777666543.34457*********************9876256787752122122 PP STTSSECEECT-EEE-TTTTS.-SEEEEEE CS Methyltr_RsmB-F 170 pkglklgeeagtlrllPhtenkdgffiakl 199 + + g e+ lr P+t + gffia + sp|Q8K4F6|NSUN5_MOUSE 394 GLSTFPGSEH-CLRASPETTLTGGFFIAVF 422 2333345555.99**************987 PP >> sp|Q8CCT7|NSUN3_MOUSE tRNA (cytosine(34)-C(5))-methyltransferase, mitochondrial OS=Mus musculus OX=10090 GN=Nsun3 PE # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 101.1 0.0 4.8e-32 7.7e-29 2 200 .] 125 332 .. 124 332 .. 0.80 Alignments for each domain: == domain 1 score: 101.1 bits; conditional E-value: 4.8e-32 HHH---TT-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--....SEEEEES-CCCCHHHHCC--EEEEEE CS Methyltr_RsmB-F 2 llLapqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvt....ntivleaDarkidkvlggelfDriLl 85 l+L+++++e +lDlcaaPGgK +++ + g ++ ++ ++ R + + ++l+ + + ++v+e D+r++ + ++fD++L+ sp|Q8CCT7|NSUN3_MOUSE 125 LALELRDGEAVLDLCAAPGGKSVALLQC-AYPGYLLCNEYDRPRGRWLRQTLESFIPQplinVIKVSELDGREMGDAQP-ATFDKVLV 210 789************************9.999*******************9997544344367899*******77766.69****** PP EE--CCGG.GTTT-TTHHHH.-CCHHCCHHHHHHHHHHHHHHHEEEEEEEEEEES---CTCTHHHHHHHHHH-TTEEEESSBSTTSTT CS Methyltr_RsmB-F 86 DaPCsgtg.virrdpdvklrrkekdiaqlaklqkellsaaidllkkgGvlvYsTCsvlveEneevieeaLkkredvelvetelsepkg 172 DaPCs + + k + ++ ++l lq el+ +ai+ l++gG lvYsTC++ +En+ vi e+L + ++ v++ s+ sp|Q8CCT7|NSUN3_MOUSE 211 DAPCSNDRsWLFSSDSQKAAYRIHQRKNLPVLQVELVRSAIKALRPGGLLVYSTCTLSKAENQDVISEVLTSDSNIVPVDI--SG-IA 295 *****86515666667778888888899******************************************99876554443..22.22 PP SSECEEC........T-EEE-TTTTS..-SEEEEEEE CS Methyltr_RsmB-F 173 lklgeea........gtlrllPhtenk.dgffiaklk 200 +++++ l ++P++ + +++iaklk sp|Q8CCT7|NSUN3_MOUSE 296 RTFSQDFtfaptdqkCSLLVIPEKGKAwGPMYIAKLK 332 2222222233344447888899886542679999986 PP >> sp|Q14AW5|NSUN7_MOUSE Putative methyltransferase NSUN7 OS=Mus musculus OX=10090 GN=Nsun7 PE=2 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.9 1.0 1.3e-09 2.1e-06 51 157 .. 342 462 .. 311 478 .. 0.67 Alignments for each domain: == domain 1 score: 27.9 bits; conditional E-value: 1.3e-09 HHHHHTT--SEEEEES-CCCCHHHHCC.--EEEEEEEE--CCGGG.......TTT-TTHHHH.-......CCH.HCCHHHHHHHHHHH CS Methyltr_RsmB-F 51 enlkrLgvtntivleaDarkidkvlgg.elfDriLlDaPCsgtgv.......irrdpdvklrrk......ekd.iaqlaklqkellsa 123 + +r+g++n+ +l+ i++ + + iLl Cs++gv ++ ++d l+++ +kd + +l+++q e l+ sp|Q14AW5|NSUN7_MOUSE 342 KLFTRMGCQNIEILHETFLSIESKDHRlQNVKVILLLPRCSSLGVsnpvefiLNEHEDKSLLQDlsqgglPKDkLETLVQQQFEQLTH 429 4568999999999998877776555544778888888889999982222222334444444443222233333256677777788888 PP HHHHEEEEEEEEEEES---CTCTHHHHHHHHHH- CS Methyltr_RsmB-F 124 aidllkkgGvlvYsTCsvlveEneevieeaLkkr 157 a++ +k + +vY+TCsv eEne v+e+aL+ + sp|Q14AW5|NSUN7_MOUSE 430 AMKFTKVQ-AIVYCTCSVSKEENEDVVEKALEYQ 462 88877876.79********************865 PP >> sp|Q9DCL4|MET15_MOUSE Probable methyltransferase-like protein 15 OS=Mus musculus OX=10090 GN=Mettl15 PE=1 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.4 0.0 3.7e-09 5.9e-06 2 92 .. 82 175 .. 81 189 .. 0.92 Alignments for each domain: == domain 1 score: 26.4 bits; conditional E-value: 3.7e-09 HHH---TT-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CCCCHHHHCC.....--EEEEE CS Methyltr_RsmB-F 2 llLapqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlgg.....elfDriL 84 +Lapq+++ +lD+ + Gg T i++ ++ v+A+d++ + ++ae l+rL t+++ l + ++ + l + ++D iL sp|Q9DCL4|MET15_MOUSE 82 HCLAPQKGQVFLDMTFGSGGHTRAILQK-EPDVMVYALDRDPV-AYAIAEQLSRLYPTQIQALLGQFSQAEALLMKagvqpGTIDGIL 167 579************************8.9999*******987.679***********************9999888888889***** PP EEE--CCG CS Methyltr_RsmB-F 85 lDaPCsgt 92 +D Cs++ sp|Q9DCL4|MET15_MOUSE 168 MDLGCSSM 175 ******86 PP >> sp|Q921L7|HEMK1_MOUSE HemK methyltransferase family member 1 OS=Mus musculus OX=10090 GN=Hemk1 PE=2 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.6 0.0 1.7e-06 0.0028 5 69 .. 157 221 .. 153 228 .. 0.87 Alignments for each domain: == domain 1 score: 17.6 bits; conditional E-value: 1.7e-06 ---TT-EEEECS-TT-HHH.HHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--.SEEEEES-CC CS Methyltr_RsmB-F 5 apqeeetilDlcaaPGgKT.thiaelmknkgtvvAvdankeRlkrvaenlkrLgvt.ntivleaDar 69 q++ il++ ++ G+ T +++++l +k++vvAvd+++ ++ +en +rL ++ + +++ D++ sp|Q921L7|HEMK1_MOUSE 157 RAQDGPLILEVGCGSGAITlSLLSQL--PKSRVVAVDKEEAAVSLTHENAQRLQLQdRIRIIHLDIT 221 5688889**********995667777..999************************967889999986 PP >> tr|Q8BML3|Q8BML3_MOUSE Glycosyltransferase 28 domain-containing 2 OS=Mus musculus OX=10090 GN=Glt28d2 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.6 0.0 6.2e-05 0.098 125 144 .. 113 132 .. 98 138 .. 0.86 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 6.2e-05 HHHEEEEEEEEEEES---CT CS Methyltr_RsmB-F 125 idllkkgGvlvYsTCsvlve 144 +++l+k+G l Y+TCs+l+e tr|Q8BML3|Q8BML3_MOUSE 113 AKQLHKEGHLFYCTCSMLPE 132 577899***********997 PP >> sp|Q8K1A0|METL5_MOUSE Methyltransferase-like protein 5 OS=Mus musculus OX=10090 GN=Mettl5 PE=2 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.9 0.0 9.7e-05 0.16 29 88 .. 70 128 .. 47 145 .. 0.83 Alignments for each domain: == domain 1 score: 11.9 bits; conditional E-value: 9.7e-05 HTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CCCCHHHHCC--EEEEEEEE- CS Methyltr_RsmB-F 29 lmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlggelfDriLlDaP 88 m +g v d+++ l+ ++n++ + +tn+ +++ D+ ++ +++ lfD +++ P sp|Q8K1A0|METL5_MOUSE 70 AMLGAGLCVGFDIDEDALEIFNKNVEEFELTNVDMIQCDVYSLSNRMSK-LFDTVIMNPP 128 45567888999************************************96.******9988 PP >> sp|P35550|FBRL_MOUSE rRNA 2'-O-methyltransferase fibrillarin OS=Mus musculus OX=10090 GN=Fbl PE=1 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.7 0.0 0.00012 0.19 7 87 .. 164 243 .. 159 267 .. 0.81 Alignments for each domain: == domain 1 score: 11.7 bits; conditional E-value: 0.00012 -TT-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CCCCHHHHCC.--EEEEEEEE CS Methyltr_RsmB-F 7 qeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlgg.elfDriLlDa 87 +++ ++l l aa G +h+++++ + g v+Av+ +++ + ++ nl + tn+i + Dar+++k+ +++D i D+ sp|P35550|FBRL_MOUSE 164 KPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLI-NLAKK-RTNIIPVIEDARHPHKYRMLiAMVDVIFADV 243 567789999*************************9866555554.44443.3457788899999999866547788777775 PP >> sp|Q80WS3|FBLL1_MOUSE rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1 OS=Mus musculus OX=10090 GN=Fbll1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.3 0.0 0.00015 0.24 7 86 .. 152 230 .. 147 242 .. 0.75 Alignments for each domain: == domain 1 score: 11.3 bits; conditional E-value: 0.00015 -TT-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CCCCHHHHCC.--EEEEEEE CS Methyltr_RsmB-F 7 qeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlgg.elfDriLlD 86 +++ ++l l aa G +h+++++ + g v+Av+ ++ R+ r n+ + tn+i + Dar++ k+ ++D i D sp|Q80WS3|FBLL1_MOUSE 152 KPKSKVLYLGAASGTTVSHVSDIIGPDGLVYAVEFSH-RAGRDLVNVAKKR-TNIIPVLEDARHPLKYRMLiGMVDVIFAD 230 56778999**************************975.5555445555433.45778888999887664332456666555 PP >> tr|Q8CBC7|Q8CBC7_MOUSE Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Mus musculus OX=10090 GN # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.8 0.0 0.00021 0.34 11 44 .. 44 79 .. 39 120 .. 0.75 2 ? -2.4 0.0 2.5 3.9e+03 109 134 .. 126 153 .. 108 154 .. 0.64 Alignments for each domain: == domain 1 score: 10.8 bits; conditional E-value: 0.00021 EEEECS-TT-HHHHHHHHH..TTTTSEEEEEESSCC CS Methyltr_RsmB-F 11 tilDlcaaPGgKTthiael..mknkgtvvAvdanke 44 + +DlcaaPG+ +++ + +g+vvAvd ++ tr|Q8CBC7|Q8CBC7_MOUSE 44 RAVDLCAAPGSWSQVLSQKvgGQGSGQVVAVDLQAM 79 568*************99834466789*****8764 PP == domain 2 score: -2.4 bits; conditional E-value: 2.5 HHCCHHHHHHHH..HHHHHHHEEEEEEE CS Methyltr_RsmB-F 109 diaqlaklqkel..lsaaidllkkgGvl 134 d+ ++++ q l l++a ++lk gG tr|Q8CBC7|Q8CBC7_MOUSE 126 DVDEYMQAQLLLaaLNIATHVLKLGGCF 153 4444444443322266777778999876 PP >> sp|Q91WU5|AS3MT_MOUSE Arsenite methyltransferase OS=Mus musculus OX=10090 GN=As3mt PE=1 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.3 0.0 0.021 34 8 47 .. 71 110 .. 65 153 .. 0.83 2 ? 5.1 0.0 0.012 20 110 145 .. 158 195 .. 151 202 .. 0.79 Alignments for each domain: == domain 1 score: 4.3 bits; conditional E-value: 0.021 TT-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHH CS Methyltr_RsmB-F 8 eeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlk 47 e+ +ilDl ++ G +++l+ +kg+v+ +d+ + ++ sp|Q91WU5|AS3MT_MOUSE 71 ENCRILDLGSGSGRDCYVLSQLVGEKGHVTGIDMTEVQVE 110 5678*****************************9887665 PP == domain 2 score: 5.1 bits; conditional E-value: 0.012 HCCHHHHHHHHHHHHHHHEEEEEEEEEEE..S---CTC CS Methyltr_RsmB-F 110 iaqlaklqkellsaaidllkkgGvlvYsT..CsvlveE 145 +++l+ ++++l+ + +lk+gG l +s s++v E sp|Q91WU5|AS3MT_MOUSE 158 VINLVPDKQQVLQEVYRVLKHGGELYFSDvyASLEVPE 195 67788899*****************9885223555555 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (200 nodes) Target sequences: 22289 (11757923 residues searched) Passed MSV filter: 765 (0.0343219); expected 445.8 (0.02) Passed bias filter: 516 (0.0231504); expected 445.8 (0.02) Passed Vit filter: 50 (0.00224326); expected 22.3 (0.001) Passed Fwd filter: 14 (0.000628113); expected 0.2 (1e-05) Initial search space (Z): 22289 [actual number of targets] Domain search space (domZ): 14 [number of targets reported over threshold] # CPU time: 0.22u 0.01s 00:00:00.23 Elapsed: 00:00:00.08 # Mc/sec: 29394.81 // [ok]