# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
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# query HMM file: pfam_list/Methyltr_RsmB-F.hmm.txt
# target sequence database: proteomes/Natronomonas_moolapensis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Methyltr_RsmB-F [M=200]
Accession: PF01189.16
Description: 16S rRNA methyltransferase RsmB/F
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.7e-52 175.3 0.0 2e-52 175.1 0.0 1.1 1 tr|M1XPJ5|M1XPJ5_NATM8 tRNA/rRNA cytosine-C5-methylase OS=Na
0.0086 13.1 0.0 0.013 12.5 0.0 1.2 1 tr|M1XTZ7|M1XTZ7_NATM8 Ribosomal RNA large subunit methyltra
Domain annotation for each sequence (and alignments):
>> tr|M1XPJ5|M1XPJ5_NATM8 tRNA/rRNA cytosine-C5-methylase OS=Natronomonas moolapensis (strain DSM 18674 / JCM 14361 / 8
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 175.1 0.0 1.5e-55 2e-52 2 199 .. 93 299 .. 92 300 .. 0.91
Alignments for each domain:
== domain 1 score: 175.1 bits; conditional E-value: 1.5e-55
HHH---TT-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CCCCH.HHHCC--EEEEEEEE CS
Methyltr_RsmB-F 2 llLapqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkid.kvlggelfDriLlDa 87
l+L+p ++e++lD caaPG+KTt +a+ m+++g +v +d+n Rl+++ +n +r gvtn+ v++aDar+++ k gge fDr L+D+
tr|M1XPJ5|M1XPJ5_NATM8 93 LALDPDPGERVLDCCAAPGSKTTQLAARMDDRGLLVGNDNNLGRLSALRSNAERCGVTNLVVTRADARNFSlKSFGGEAFDRTLVDV 179
78********************************************************************9345677********** PP
--CCGGGTTT-TTHHHH.-CCHHCCHHHHHHHHHHHHHHHEEEEEEEEEEES---CTCTHHHHHHHHHH-TTEEEESSB..STTSTT CS
Methyltr_RsmB-F 88 PCsgtgvirrdpdvklrrkekdiaqlaklqkellsaaidllkkgGvlvYsTCsvlveEneevieeaLkkredvelvete..lsepkg 172
PCs g+ir++pd+ + + +a qk +l+ a++ +++gG++vYsTC+ ++eEne+ +++aL+++ + +l e e l + +g
tr|M1XPJ5|M1XPJ5_NATM8 180 PCSCEGTIRKNPDALEDWSMDHVEGIAGVQKGILDRALEITRPGGTVVYSTCTFAPEENEAIVQHALETH-ECRLLEYElpLDHVSG 265
**************99999999************************************************.6677665511455566 PP
SSECEEC.......T-EEE-TTTTS.-SEEEEEE CS
Methyltr_RsmB-F 173 lklgeea.......gtlrllPhtenkdgffiakl 199
l+ e+ ++r++Ph++++ gff akl
tr|M1XPJ5|M1XPJ5_NATM8 266 LTAWEGDsfddsmrRAKRIYPHHNDTGGFFCAKL 299
66555558899988899****************9 PP
>> tr|M1XTZ7|M1XTZ7_NATM8 Ribosomal RNA large subunit methyltransferase E OS=Natronomonas moolapensis (strain DSM 18674
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 12.5 0.0 9.6e-06 0.013 8 45 .. 36 71 .. 33 91 .. 0.89
Alignments for each domain:
== domain 1 score: 12.5 bits; conditional E-value: 9.6e-06
TT-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCC CS
Methyltr_RsmB-F 8 eeetilDlcaaPGgKTthiaelmknkgtvvAvdankeR 45
+++t++Dl aaPGg +el+ + gtvv vd + R
tr|M1XTZ7|M1XTZ7_NATM8 36 DGDTVVDLGAAPGGWLQVASELVGEGGTVVGVDLQ--R 71
799****************************9975..4 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (200 nodes)
Target sequences: 2723 (809592 residues searched)
Passed MSV filter: 76 (0.0279104); expected 54.5 (0.02)
Passed bias filter: 70 (0.0257069); expected 54.5 (0.02)
Passed Vit filter: 10 (0.00367242); expected 2.7 (0.001)
Passed Fwd filter: 2 (0.000734484); expected 0.0 (1e-05)
Initial search space (Z): 2723 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01
# Mc/sec: 16191.84
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