# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/Methyltr_RsmB-F.hmm.txt # target sequence database: proteomes/Nematostella_vectensis.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Methyltr_RsmB-F [M=200] Accession: PF01189.16 Description: 16S rRNA methyltransferase RsmB/F Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-76 257.3 0.0 1.9e-76 256.6 0.0 1.3 1 tr|A7S5Z9|A7S5Z9_NEMVE Predicted protein OS=Nematostella vec 2.7e-42 145.1 0.0 6.2e-42 144.0 0.0 1.7 1 tr|A7SEM2|A7SEM2_NEMVE Predicted protein OS=Nematostella vec 1.1e-37 130.1 0.0 4.2e-37 128.2 0.0 1.8 1 tr|A7SAM8|A7SAM8_NEMVE Predicted protein (Fragment) OS=Nemat 1.3e-31 110.2 0.0 1.5e-31 110.1 0.0 1.0 1 tr|A7S2N2|A7S2N2_NEMVE Predicted protein OS=Nematostella vec 4.8e-25 88.8 0.0 8.2e-25 88.1 0.0 1.4 1 tr|A7RT21|A7RT21_NEMVE Predicted protein OS=Nematostella vec 0.00027 21.1 0.0 0.00027 21.1 0.0 1.1 1 tr|A7TBF3|A7TBF3_NEMVE Predicted protein (Fragment) OS=Nemat 0.00034 20.7 0.0 0.0032 17.6 0.0 2.3 1 tr|A7SXC0|A7SXC0_NEMVE Predicted protein OS=Nematostella vec 0.0045 17.1 0.0 0.27 11.3 0.0 2.3 2 tr|A7RIE8|A7RIE8_NEMVE Predicted protein OS=Nematostella vec 0.0052 16.9 0.0 0.0094 16.0 0.0 1.4 1 tr|A7SXL3|A7SXL3_NEMVE Protein-L-isoaspartate O-methyltransf 0.0091 16.1 0.0 0.015 15.4 0.0 1.4 1 tr|A7RYK6|A7RYK6_NEMVE Predicted protein OS=Nematostella vec ------ inclusion threshold ------ 0.01 15.9 0.0 0.018 15.1 0.0 1.4 1 tr|A7RWP0|A7RWP0_NEMVE Predicted protein OS=Nematostella vec 0.013 15.6 0.0 0.023 14.8 0.0 1.5 1 tr|A7T8E8|A7T8E8_NEMVE Predicted protein OS=Nematostella vec 0.019 15.0 0.0 0.3 11.1 0.0 2.1 2 tr|A7T9Z7|A7T9Z7_NEMVE Predicted protein OS=Nematostella vec 0.02 15.0 0.0 0.3 11.1 0.0 2.1 2 tr|A7SZN3|A7SZN3_NEMVE Predicted protein OS=Nematostella vec 0.028 14.5 0.0 0.042 13.9 0.0 1.1 1 tr|A7RHA8|A7RHA8_NEMVE Predicted protein OS=Nematostella vec 0.053 13.6 0.1 0.075 13.1 0.1 1.2 1 tr|A7RYX9|A7RYX9_NEMVE Predicted protein (Fragment) OS=Nemat 0.13 12.3 8.4 23 5.0 0.2 3.9 5 tr|A7T1V4|A7T1V4_NEMVE Predicted protein (Fragment) OS=Nemat 0.17 11.9 0.0 0.3 11.1 0.0 1.4 1 tr|A7S8G2|A7S8G2_NEMVE Predicted protein OS=Nematostella vec 0.23 11.5 0.0 0.57 10.2 0.0 1.6 2 tr|A7SVE3|A7SVE3_NEMVE Predicted protein OS=Nematostella vec 0.23 11.5 0.0 0.65 10.0 0.0 1.6 2 tr|A7SVE2|A7SVE2_NEMVE Predicted protein OS=Nematostella vec 0.25 11.4 0.0 0.66 10.0 0.0 1.6 2 tr|A7SY09|A7SY09_NEMVE Predicted protein OS=Nematostella vec Domain annotation for each sequence (and alignments): >> tr|A7S5Z9|A7S5Z9_NEMVE Predicted protein OS=Nematostella vectensis OX=45351 GN=v1g166855 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 256.6 0.0 1.6e-79 1.9e-76 1 200 [] 195 403 .. 195 403 .. 0.94 Alignments for each domain: == domain 1 score: 256.6 bits; conditional E-value: 1.6e-79 HHHH---TT-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CCCCHHHHCC--EEEEEEEE CS Methyltr_RsmB-F 1 allLapqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlggelfDriLlDa 87 +++Lapqe+e++lD+caaPGgKTt++a+lmkn+g vvA+da+keR+k++++n++rLgvtnt v+++D+r ++kv+gg fDr LlDa tr|A7S5Z9|A7S5Z9_NEMVE 195 VMALAPQEKERVLDMCAAPGGKTTYLAALMKNTGIVVANDAKKERTKALVANIHRLGVTNTVVCNYDGRAFPKVMGG--FDRTLLDA 279 589*************************************************************************9..******** PP --CCGGGTTT-TTHHHH.-CCHHCCHHHHHHHHHHHHHHHE....EEEEEEEEEES---CTCTHHHHHHHHHH-TTEEEESSBSTTS CS Methyltr_RsmB-F 88 PCsgtgvirrdpdvklrrkekdiaqlaklqkellsaaidll....kkgGvlvYsTCsvlveEneevieeaLkkredvelvetelsep 170 PCsgtgvi++dp+vk++++ekdi ++++ qkel+ aaid++ +gG++vYsTCs+ veE+e+v+++aL+kr +v+lv+t l tr|A7S5Z9|A7S5Z9_NEMVE 280 PCSGTGVISKDPSVKTNKTEKDILRCSHVQKELILAAIDSVdaksPTGGYIVYSTCSIMVEEDEWVVDYALSKR-HVKLVPTGLD-- 363 *****************************************997778**************************9.9******543.. PP TTSSECEEC..............T-EEE-TTTTS.-SEEEEEEE CS Methyltr_RsmB-F 171 kglklgeea..............gtlrllPhtenkdgffiaklk 200 +g+e t+r++ h++n+dgff+aklk tr|A7S5Z9|A7S5Z9_NEMVE 364 ----FGREGfskfrgrhfhpslkLTRRFYAHAHNMDGFFVAKLK 403 ....33333333446889999999******************96 PP >> tr|A7SEM2|A7SEM2_NEMVE Predicted protein OS=Nematostella vectensis OX=45351 GN=v1g211081 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 144.0 0.0 5.3e-45 6.2e-42 3 165 .. 266 440 .. 264 488 .. 0.90 Alignments for each domain: == domain 1 score: 144.0 bits; conditional E-value: 5.3e-45 HH---TT-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CCCCHHHHCC............ CS Methyltr_RsmB-F 3 lLapqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlgg............ 77 +L pq +e +lD+caaPGgKT hia+lmknkg +vA d+++ +++++++n + v ++ Da+k ++ + tr|A7SEM2|A7SEM2_NEMVE 266 ILGPQSGESVLDMCAAPGGKTCHIAALMKNKGLIVAFDKSQPKIQKIIANCEMQKVSIVKTHVIDASKALDTKAApssrdvsttspp 352 799***********************************************998888877777778887755555556789999**** PP ...--EEEEEEEE--CCGGGTTT-TTHHHH.-CCHHCCHHHHHHHHHHHHHHHEEEEEEEEEEES---CTCTHHHHHHHHHH-TTEE CS Methyltr_RsmB-F 78 ...elfDriLlDaPCsgtgvirrdpdvklrrkekdiaqlaklqkellsaaidllkkgGvlvYsTCsvlveEneevieeaLkkredve 161 e fDriLlDaPCs++g +r ++v ++ k k+++++ klq++++s+a+ ll++gG+lvYsTC++++eEne++++ aL++ + + tr|A7SEM2|A7SEM2_NEMVE 353 yppEAFDRILLDAPCSALG--QRPQSV-VHMKLKELQSFPKLQRKIFSSAVGLLRPGGTLVYSTCTITPEENEKQVAWALRSFPGLR 436 *****************99..577777.888999***********************************************999999 PP EESS CS Methyltr_RsmB-F 162 lvet 165 lv+ tr|A7SEM2|A7SEM2_NEMVE 437 LVPQ 440 9875 PP >> tr|A7SAM8|A7SAM8_NEMVE Predicted protein (Fragment) OS=Nematostella vectensis OX=45351 GN=v1g20689 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 128.2 0.0 3.6e-40 4.2e-37 3 199 .. 132 388 .. 130 389 .. 0.87 Alignments for each domain: == domain 1 score: 128.2 bits; conditional E-value: 3.6e-40 HH---TT-EEEECS-TT-HHHHHHHHHTT.......TTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CCCCHHHHCC..... CS Methyltr_RsmB-F 3 lLapqeeetilDlcaaPGgKTthiaelmk.......nkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlgg..... 77 l++ +++++ilD caaPG+KT+ i e+++ +g v+A++ +++R +++ krL + +++ Da+ +++ + tr|A7SAM8|A7SAM8_NEMVE 132 LMDIKPGQKILDTCAAPGSKTSQIIEMLHgdketgiAEGLVIANELQNKRCYMLIHQSKRLRSPSCVITNHDASTYPTLHVKkengd 218 6788999********************7522222223578**********************************9998877778999 PP ...--EEEEEEEE--CCGGGTTT-TTHHHH.-CCHHCCHHHHHHHHHHHHHHHEEEEEEEEEEES---CTCTHHHHHHHHHH-T.TE CS Methyltr_RsmB-F 78 ...elfDriLlDaPCsgtgvirrdpdvklrrkekdiaqlaklqkellsaaidllkkgGvlvYsTCsvlveEneevieeaLkkre.dv 160 lfDriL D+PCsg g++r++p + + +++ +l++ q ++l a+++l gG +vYsTC++ + Ene v++e+L++ + tr|A7SAM8|A7SAM8_NEMVE 219 rtpLLFDRILCDVPCSGDGTMRKNPLIWNKWTPQLGVSLHRTQLRILARAMEMLEVGGRIVYSTCTMSPIENESVVAEMLRNSDgAL 305 99999**********************66668888899*******************************************985234 PP EEESSBSTTSTTSSECEEC...............................................T-EEE-TTTTS.-SEEEEEE CS Methyltr_RsmB-F 161 elvetelsepkglklgeea...............................................gtlrllPhtenkdgffiakl 199 elv++ +e +lk + +r++Ph++++ gffia+l tr|A7SAM8|A7SAM8_NEMVE 306 ELVDL-SNELPNLKRS--PglhswklmmkdgsevtgcdpgspaflggfrpsmlpppdneakamhleCCIRVYPHQQDTGGFFIAAL 388 66666.3333333333..2446799***************************************9999****************98 PP >> tr|A7S2N2|A7S2N2_NEMVE Predicted protein OS=Nematostella vectensis OX=45351 GN=v1g102215 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 110.1 0.0 1.3e-34 1.5e-31 2 178 .. 20 200 .. 19 228 .. 0.85 Alignments for each domain: == domain 1 score: 110.1 bits; conditional E-value: 1.3e-34 HHH---TT-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHT...T--SEEEEES-CCCCHHHHCC--EEEEEE CS Methyltr_RsmB-F 2 llLapqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrL...gvtntivleaDarkidkvlggelfDriLl 85 ++L+ ++ t+lD+ca+PGgKT +++l++++g +vA++ ++R +++ + ++ g+tn+++ +D++k+ +DriL+ tr|A7S2N2|A7S2N2_NEMVE 20 ICLDVGPDSTVLDMCASPGGKTVAMMQLLSERGGLVANEPTQSRRRKLRKVIQEYipkGQTNITIRGMDGTKFGGLEP-CSYDRILV 105 67999999**********************************9988887777764344899************65544.68****** PP EE--CCGGGTTT-TTHHHH.-CCHHCCHHHHHHHHHHHHHHHEEEEEEEEEEES---CTCTHHHHHHHHHH..-TTEEEESSBSTTS CS Methyltr_RsmB-F 86 DaPCsgtgvirrdpdvklrrkekdiaqlaklqkellsaaidllkkgGvlvYsTCsvlveEneevieeaLkk..redvelvetelsep 170 DaPCs+ r + +ek +++++lq++l+ +a+ +l ++G +vYsTC++ + En vi+ +L++ + +++ ++se tr|A7S2N2|A7S2N2_NEMVE 106 DAPCSTDRHCLRSGFQTDSWSEKKSQKFSQLQNKLVMSALGSLTSDGRVVYSTCTMSPYENDGVIQGVLENfrHGGKNISIERISEE 192 ******99999998888899999**********************************************852244455555556666 PP TTSSECEE CS Methyltr_RsmB-F 171 kglklgee 178 ++++ ge tr|A7S2N2|A7S2N2_NEMVE 193 QIAAWGEM 200 66666665 PP >> tr|A7RT21|A7RT21_NEMVE Predicted protein OS=Nematostella vectensis OX=45351 GN=v1g240471 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 88.1 0.0 7e-28 8.2e-25 7 200 .] 221 421 .. 215 421 .. 0.77 Alignments for each domain: == domain 1 score: 88.1 bits; conditional E-value: 7e-28 -TT-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CCCCHHHHCC.--EEEEEEEE--CCG CS Methyltr_RsmB-F 7 qeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlgg.elfDriLlDaPCsgt 92 ++ +++D+caaPG K +h+a+ ++n+g+v+ d++++Rl +++ +k+ g t + + +d +++ + ++ i +D Csg tr|A7RT21|A7RT21_NEMVE 221 PPGAHVIDACAAPGNKSSHLAAKLNNNGRVFSFDISASRLAVMQKQMKKAGATCVVTEHKSFLDVDPRSSQyRNVEYIVVDPSCSGS 307 567799**********************************************95555555555555555556789************ PP GGTTT-TTHHHH.-CCHHCC....HHHHHHHHHHHHHHHEEEEEEEEEEES---CTCTHHHHHHHHHH-T.TEEEESS.BSTTSTTS CS Methyltr_RsmB-F 93 gvirrdpdvklrrkekdiaq....laklqkellsaaidllkkgGvlvYsTCsvlveEneevieeaLkkre.dvelvet.elsepkgl 173 g+i+r + +e d++q la q +l+ a+ + + YsTCs++ +Ene v+++aLk + + el + e ++gl tr|A7RT21|A7RT21_NEMVE 308 GIISRLDGLVSDEQEDDLQQrlesLADFQLSVLTHAFSF-PAVKKVAYSTCSIHSQENEDVVHKALKVSQgQFELAHAlESWPSRGL 393 *********9*******9873222455566666655432.3444699*******************976526666654122223444 PP SECEEC.T-EEE-TTTTS.-SEEEEEEE CS Methyltr_RsmB-F 174 klgeea.gtlrllPhtenkdgffiaklk 200 + ++a + lr P++++++gff+a ++ tr|A7RT21|A7RT21_NEMVE 394 PVFQGAeKCLRASPESDHTNGFFVALFQ 421 4433333589***************885 PP >> tr|A7TBF3|A7TBF3_NEMVE Predicted protein (Fragment) OS=Nematostella vectensis OX=45351 GN=v1g153500 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.1 0.0 2.4e-07 0.00027 134 157 .. 25 48 .. 2 63 .. 0.80 Alignments for each domain: == domain 1 score: 21.1 bits; conditional E-value: 2.4e-07 EEEEES---CTCTHHHHHHHHHH- CS Methyltr_RsmB-F 134 lvYsTCsvlveEneevieeaLkkr 157 + YsTCs++ +Ene v+++aLk tr|A7TBF3|A7TBF3_NEMVE 25 VAYSTCSIHSQENEDVVHKALKVS 48 78*******************965 PP >> tr|A7SXC0|A7SXC0_NEMVE Predicted protein OS=Nematostella vectensis OX=45351 GN=v1g194470 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.6 0.0 2.7e-06 0.0032 10 156 .. 197 356 .. 192 366 .. 0.68 Alignments for each domain: == domain 1 score: 17.6 bits; conditional E-value: 2.7e-06 -EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-C.CCCHHHHCC--EEEEEEEE--CCGGGT CS Methyltr_RsmB-F 10 etilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDa.rkidkvlggelfDriLlDaPCsgtgvi 95 + i+ G T++++ ++++ tv+ a ++++ +++Lg +n++ le i+++ +++ i + +PCs tg++ tr|A7SXC0|A7SXC0_NEMVE 197 DDIIQTHVESGNITAYLSSVIHPDRTVFTFGATPDTKGHLQNKMEKLGARNVTFLEEHFlDAIPNDERFRKVKIIVVNVPCSKTGIV 283 5566666667999*************************************99988764312333333334577799**********9 PP TT-TTHHHH.-CCHHCCHHH...HHHHHHHHHHHHE..........EEEEEEEEEES---CTCTHHHHHHHHHH CS Methyltr_RsmB-F 96 rrdpdvklrrkekdiaqlak...lqkellsaaidll..........kkgGvlvYsTCsvlveEneevieeaLkk 156 + v + + i++la+ ++++ a+++l +G +vY T s++ En v+++a+++ tr|A7SXC0|A7SXC0_NEMVE 284 NPVDFVLQEGVSASIKELARgglDNSKIRGLAFQHLgvlkhamsfpLLQG-IVYITRSIHTWENIDVVKKAMEE 356 87666655555555555554221223333333333344432222223334.67888888888888888887765 PP >> tr|A7RIE8|A7RIE8_NEMVE Predicted protein OS=Nematostella vectensis OX=45351 GN=v1g159091 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 11.3 0.0 0.00023 0.27 3 48 .. 46 89 .. 44 140 .. 0.72 2 ? 3.6 0.0 0.054 63 119 169 .. 266 312 .. 251 335 .. 0.80 Alignments for each domain: == domain 1 score: 11.3 bits; conditional E-value: 0.00023 HH---TT-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHH CS Methyltr_RsmB-F 3 lLapqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkr 48 +Lap+++e ++D+ + Gg T i++ k +v+Avd++ ++ tr|A7RIE8|A7RIE8_NEMVE 46 FLAPKDGEVFVDATFGAGGHTCAILNS--AKCKVFAVDRDPVAVEI 89 69********************99766..77889***998766554 PP == domain 2 score: 3.6 bits; conditional E-value: 0.054 HHHHHHHHHEEEEEEEEEEES---CTCTHHHHHHHHHH-TTEEEESSBSTT CS Methyltr_RsmB-F 119 ellsaaidllkkgGvlvYsTCsvlveEneevieeaLkkredvelvetelse 169 + l+aa +ll +gG lv s + +E++ ++++Lk+++ ++++t +s+ tr|A7RIE8|A7RIE8_NEMVE 266 KALKAAKKLLTPGGRLVV--ISFHSAEDS-IVKHFLKDEATRKSSKT-MSD 312 4589999*********95..699999986.78******999998888.444 PP >> tr|A7SXL3|A7SXL3_NEMVE Protein-L-isoaspartate O-methyltransferase OS=Nematostella vectensis OX=45351 GN=v1g136839 PE # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.0 0.0 8.1e-06 0.0094 6 73 .. 76 148 .. 70 161 .. 0.84 Alignments for each domain: == domain 1 score: 16.0 bits; conditional E-value: 8.1e-06 --TT-EEEECS-TT-HHHHHHHHHTTTTSEEEEEES.....SCCCHHHHHHHHHHTT--SEEEEES-CCCCHH CS Methyltr_RsmB-F 6 pqeeetilDlcaaPGgKTthiaelmknkgtvvAvda.....nkeRlkrvaenlkrLgvtntivleaDarkidk 73 +e+ ++lD+ ++ G T+ +a ++ ++g+vv +d+ + +R + ++ n + L + +i++++D+rk + tr|A7SXL3|A7SXL3_NEMVE 76 IREGAKVLDVGSGSGYLTAVMAIMVGKTGKVVGIDHiqelvDMSRKNVLKGNANLLEENRLILVTGDGRKGYS 148 578889*****************************6333336789************************9744 PP >> tr|A7RYK6|A7RYK6_NEMVE Predicted protein OS=Nematostella vectensis OX=45351 GN=v1g241579 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.4 0.0 1.3e-05 0.015 29 89 .. 93 153 .. 68 232 .. 0.78 Alignments for each domain: == domain 1 score: 15.4 bits; conditional E-value: 1.3e-05 HTTTTSEEEEEESSCCCHHHHHHHHHHTT--.SEEEEES-CCCCHHHHCC--EEEEEEEE-- CS Methyltr_RsmB-F 29 lmknkgtvvAvdankeRlkrvaenlkrLgvt.ntivleaDarkidkvlggelfDriLlDaPC 89 l ++++v A+d+n ++ vaen + gv+ +++ ++aD+ d+ g +fD i P tr|A7RYK6|A7RYK6_NEMVE 93 LQVPQAEVWATDINPAAVDDVAENARLHGVEtSVTAIQADVFDCDDLKG-MKFDMIFFRPPA 153 55699*******************99999986788899****9988777.7*****988774 PP >> tr|A7RWP0|A7RWP0_NEMVE Predicted protein OS=Nematostella vectensis OX=45351 GN=v1g203274 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 15.1 0.0 1.6e-05 0.018 6 85 .. 76 158 .. 69 164 .. 0.84 Alignments for each domain: == domain 1 score: 15.1 bits; conditional E-value: 1.6e-05 --TT-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHH.....TT--SEEEEES-CCCCHHHHCC--EEEEEE CS Methyltr_RsmB-F 6 pqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkr.....LgvtntivleaDarkidkvlggelfDriLl 85 ++e+ t lD+ ++ G T+ +a ++ +kg+v+ +d+ ++ + + ++n+k+ L+++++ ++ +D+rk + g fD i + tr|A7RWP0|A7RWP0_NEMVE 76 LKEGATALDVGSGSGYLTACMAYMVGEKGKVYGIDHIDQLVTEAKNNIKKgnpelLSQKKVELIVGDGRKGHAAGG--PFDAIHV 158 678899******************************999999999999865555588889999*****99855444..5888765 PP >> tr|A7T8E8|A7T8E8_NEMVE Predicted protein OS=Nematostella vectensis OX=45351 GN=v1g223766 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.8 0.0 2e-05 0.023 29 88 .. 93 152 .. 68 200 .. 0.82 Alignments for each domain: == domain 1 score: 14.8 bits; conditional E-value: 2e-05 HTTTTSEEEEEESSCCCHHHHHHHHHHTT--.SEEEEES-CCCCHHHHCC--EEEEEEEE- CS Methyltr_RsmB-F 29 lmknkgtvvAvdankeRlkrvaenlkrLgvt.ntivleaDarkidkvlggelfDriLlDaP 88 l ++++v A+d+n ++ vaen + gv+ +++ ++aD+ d+ g +fD i P tr|A7T8E8|A7T8E8_NEMVE 93 LQVPQAEVWATDINPAAVDDVAENARLHGVEtSVTAIQADVFDCDDLKG-MKFDMIFFRPP 152 55699*******************999999867888999***9988777.7****998777 PP >> tr|A7T9Z7|A7T9Z7_NEMVE Predicted protein OS=Nematostella vectensis OX=45351 GN=v1g248861 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.1 0.0 0.00026 0.3 9 53 .. 36 80 .. 30 106 .. 0.83 2 ? 1.5 0.0 0.22 2.6e+02 120 138 .. 120 140 .. 110 147 .. 0.75 Alignments for each domain: == domain 1 score: 11.1 bits; conditional E-value: 0.00026 T-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHH CS Methyltr_RsmB-F 9 eetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenl 53 +++lDl ++ G T +a+ +n + ++ +d +k R++ ++n tr|A7T9Z7|A7T9Z7_NEMVE 36 AKFVLDLGCGTGDVTGAMAANFSNDASIIGIDPDKYRVELAKSNH 80 5689**********************************9988884 PP == domain 2 score: 1.5 bits; conditional E-value: 0.22 HHHHHHHHEEEEEEE..EEEE CS Methyltr_RsmB-F 120 llsaaidllkkgGvl..vYsT 138 + + d+lk+gG+l vY+T tr|A7T9Z7|A7T9Z7_NEMVE 120 AFRDIYDSLKPGGMLvmVYAT 140 5667899******87235887 PP >> tr|A7SZN3|A7SZN3_NEMVE Predicted protein OS=Nematostella vectensis OX=45351 GN=v1g248239 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.1 0.0 0.00026 0.3 9 53 .. 36 80 .. 30 106 .. 0.83 2 ? 1.5 0.0 0.23 2.7e+02 120 138 .. 120 140 .. 110 146 .. 0.74 Alignments for each domain: == domain 1 score: 11.1 bits; conditional E-value: 0.00026 T-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHH CS Methyltr_RsmB-F 9 eetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenl 53 +++lDl ++ G T +a+ +n + ++ +d +k R++ ++n tr|A7SZN3|A7SZN3_NEMVE 36 AKFVLDLGCGTGDVTGAMAANFSNDASIIGIDPDKYRVELAKSNH 80 5689**********************************9988884 PP == domain 2 score: 1.5 bits; conditional E-value: 0.23 HHHHHHHHEEEEEEE..EEEE CS Methyltr_RsmB-F 120 llsaaidllkkgGvl..vYsT 138 + + d+lk+gG+l vY+T tr|A7SZN3|A7SZN3_NEMVE 120 AFRDIYDSLKPGGMLvmVYAT 140 5667899******87235887 PP >> tr|A7RHA8|A7RHA8_NEMVE Predicted protein OS=Nematostella vectensis OX=45351 GN=v1g197133 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.9 0.0 3.6e-05 0.042 12 84 .. 76 147 .. 66 152 .. 0.82 Alignments for each domain: == domain 1 score: 13.9 bits; conditional E-value: 3.6e-05 EEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--.SEEEEES-CCCCHHHHCC--EEEEE CS Methyltr_RsmB-F 12 ilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvt.ntivleaDarkidkvlggelfDriL 84 +l++ ++ g T+ +a+l ++k +v A+d+n + +k+ aen k gv ++ ++D+ k + g+ +fD i tr|A7RHA8|A7RHA8_NEMVE 76 LLEIGCGT-GLTSIMAALYSKKCQVWATDVNPSAVKNTAENAKLHGVDnQVRTATGDVFKAPGLAGK-TFDIIF 147 55555554.57*******************************9999994577889999999888875.999775 PP >> tr|A7RYX9|A7RYX9_NEMVE Predicted protein (Fragment) OS=Nematostella vectensis OX=45351 GN=v1g98246 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.1 0.1 6.4e-05 0.075 8 92 .. 16 94 .. 12 118 .. 0.81 Alignments for each domain: == domain 1 score: 13.1 bits; conditional E-value: 6.4e-05 TT-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CCCCHHHHCC--EEEEEEEE--CCG CS Methyltr_RsmB-F 8 eeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlggelfDriLlDaPCsgt 92 ++ +l ++a gK t +a ++ ++v+A+d+n+e+lk++++ + ++ + v +D i+k+ ++ +Dr+ + C+g+ tr|A7RYX9|A7RYX9_NEMVE 16 NKVVVLSAAAQGIGKATALACA-REGAKVIATDINAEKLKELHS-VPGIETR--VVDVTDYEAIKKFASE--VDRVDVLFNCAGL 94 55567777777779***99987.999**************9975.4555555..6667899999999998..9**9888888886 PP >> tr|A7T1V4|A7T1V4_NEMVE Predicted protein (Fragment) OS=Nematostella vectensis OX=45351 GN=v1g5201 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.9 0.2 0.021 25 116 141 .. 10 35 .. 3 39 .. 0.78 2 ? 3.8 0.6 0.044 51 117 141 .. 25 49 .. 19 52 .. 0.75 3 ? 5.0 0.2 0.019 23 117 142 .. 39 64 .. 35 71 .. 0.83 4 ? 4.8 0.2 0.023 27 117 141 .. 53 77 .. 48 85 .. 0.80 5 ? 4.3 0.2 0.033 38 117 141 .. 81 105 .. 76 107 .] 0.77 Alignments for each domain: == domain 1 score: 4.9 bits; conditional E-value: 0.021 HHHHHHHHHHHHEEEEEEEEEEES-- CS Methyltr_RsmB-F 116 lqkellsaaidllkkgGvlvYsTCsv 141 + +l+ l+ + G l+Y Cs+ tr|A7T1V4|A7T1V4_NEMVE 10 TRGQLIYMNCSLIATRGQLIYMNCSL 35 45678888888889999999999997 PP == domain 2 score: 3.8 bits; conditional E-value: 0.044 HHHHHHHHHHHEEEEEEEEEEES-- CS Methyltr_RsmB-F 117 qkellsaaidllkkgGvlvYsTCsv 141 + +l+ l+ + G l+Y Cs+ tr|A7T1V4|A7T1V4_NEMVE 25 RGQLIYMNCSLIATRGQLIYINCSL 49 5577777888888888899988886 PP == domain 3 score: 5.0 bits; conditional E-value: 0.019 HHHHHHHHHHHEEEEEEEEEEES--- CS Methyltr_RsmB-F 117 qkellsaaidllkkgGvlvYsTCsvl 142 + +l+ + l+ + G l+Y Cs+ tr|A7T1V4|A7T1V4_NEMVE 39 RGQLIYINCSLIATRGQLIYMNCSLI 64 568888999999999********975 PP == domain 4 score: 4.8 bits; conditional E-value: 0.023 HHHHHHHHHHHEEEEEEEEEEES-- CS Methyltr_RsmB-F 117 qkellsaaidllkkgGvlvYsTCsv 141 + +l+ l+ + G l+Y Cs+ tr|A7T1V4|A7T1V4_NEMVE 53 RGQLIYMNCSLIATRGQLIYMNCSL 77 5678888888899999999999997 PP == domain 5 score: 4.3 bits; conditional E-value: 0.033 HHHHHHHHHHHEEEEEEEEEEES-- CS Methyltr_RsmB-F 117 qkellsaaidllkkgGvlvYsTCsv 141 + +l+ l+ + G l+Y Cs+ tr|A7T1V4|A7T1V4_NEMVE 81 RGQLIYMNCSLIATRGQLIYMNCSL 105 5577888888888999999999986 PP >> tr|A7S8G2|A7S8G2_NEMVE Predicted protein OS=Nematostella vectensis OX=45351 GN=v1g186929 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.1 0.0 0.00026 0.3 10 86 .. 139 214 .. 133 234 .. 0.75 Alignments for each domain: == domain 1 score: 11.1 bits; conditional E-value: 0.00026 -EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHH.HHHHHTT--SEEEEES-CCCCHHHHCC.--EEEEEEE CS Methyltr_RsmB-F 10 etilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrva.enlkrLgvtntivleaDarkidkvlgg.elfDriLlD 86 ++l l aa G +h+++++ ++g v+Av+ +++ + ++ kr + + + Dar+++k+ ++D i D tr|A7S8G2|A7S8G2_NEMVE 139 SKVLYLGAASGTTVSHVSDIVGPEGLVYAVEFSHRSGRDLInVAKKRTN---IVPIIEDARHPHKYRMLvGMVDCIFAD 214 6789999************************987655544404444544...445667888888764432467776666 PP >> tr|A7SVE3|A7SVE3_NEMVE Predicted protein OS=Nematostella vectensis OX=45351 GN=v1g218064 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.2 0.0 0.00049 0.57 28 88 .. 92 152 .. 65 162 .. 0.83 2 ? -2.5 0.0 4 4.6e+03 82 109 .. 195 222 .. 188 235 .. 0.68 Alignments for each domain: == domain 1 score: 10.2 bits; conditional E-value: 0.00049 HHTTTTSEEEEEESSCCCHHHHHHHHHHTT--.SEEEEES-CCCCHHHHCC--EEEEEEEE- CS Methyltr_RsmB-F 28 elmknkgtvvAvdankeRlkrvaenlkrLgvt.ntivleaDarkidkvlggelfDriLlDaP 88 +l ++++v A+d+n ++ vaen gv+ +++ ++aD+ d g +fD i P tr|A7SVE3|A7SVE3_NEMVE 92 ALQVPQAEVWATDINPAAVEDVAENACLHGVEnSVTAIQADVFDCDGLKG-MKFDMIFFRQP 152 455699*******************9999999557899*****9987777.79**9987655 PP == domain 2 score: -2.5 bits; conditional E-value: 4 EEEEEE--CCGGGTTT-TTHHHH.-CCH CS Methyltr_RsmB-F 82 riLlDaPCsgtgvirrdpdvklrrkekd 109 ++Ll P sg g + + + k+r + tr|A7SVE3|A7SVE3_NEMVE 195 KLLLTTPVSGWGLDEEKLEEKVREASWE 222 6788888888887776666666655444 PP >> tr|A7SVE2|A7SVE2_NEMVE Predicted protein OS=Nematostella vectensis OX=45351 GN=v1g218063 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.0 0.0 0.00056 0.65 29 88 .. 93 152 .. 68 156 .. 0.82 2 ? -1.7 0.0 2.1 2.5e+03 82 106 .. 195 219 .. 158 237 .. 0.68 Alignments for each domain: == domain 1 score: 10.0 bits; conditional E-value: 0.00056 HTTTTSEEEEEESSCCCHHHHHHHHHHTT--.SEEEEES-CCCCHHHHCC--EEEEEEEE- CS Methyltr_RsmB-F 29 lmknkgtvvAvdankeRlkrvaenlkrLgvt.ntivleaDarkidkvlggelfDriLlDaP 88 l ++++v A+d+n ++ vaen gv+ +++ ++aD+ d g +fD i P tr|A7SVE2|A7SVE2_NEMVE 93 LQVPQAEVWATDINPAAVEDVAENACLHGVEnSVTAIQADVFDCDGLKG-MKFDMIFFRQP 152 55699*******************9999999557899*****9987777.79**9987555 PP == domain 2 score: -1.7 bits; conditional E-value: 2.1 EEEEEE--CCGGGTTT-TTHHHH.- CS Methyltr_RsmB-F 82 riLlDaPCsgtgvirrdpdvklrrk 106 ++Ll P sg g + + + k+r tr|A7SVE2|A7SVE2_NEMVE 195 KLLLTTPVSGWGLDEEKLEEKVREA 219 6788888888887766655555443 PP >> tr|A7SY09|A7SY09_NEMVE Predicted protein OS=Nematostella vectensis OX=45351 GN=v1g248028 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.0 0.0 0.00057 0.66 29 88 .. 93 152 .. 67 157 .. 0.83 2 ? -1.7 0.0 2.3 2.6e+03 82 111 .. 195 224 .. 160 233 .. 0.71 Alignments for each domain: == domain 1 score: 10.0 bits; conditional E-value: 0.00057 HTTTTSEEEEEESSCCCHHHHHHHHHHTT--.SEEEEES-CCCCHHHHCC--EEEEEEEE- CS Methyltr_RsmB-F 29 lmknkgtvvAvdankeRlkrvaenlkrLgvt.ntivleaDarkidkvlggelfDriLlDaP 88 l ++++v A+d+n ++ vaen gv+ +++ ++aD+ d g +fD i P tr|A7SY09|A7SY09_NEMVE 93 LQVPQAEVWATDINPAAVEDVAENACLHGVEnSVTAIQADVFDCDGLKG-MKFDMIFFRQP 152 55699*******************9999999557899*****9987777.79**9987655 PP == domain 2 score: -1.7 bits; conditional E-value: 2.3 EEEEEE--CCGGGTTT-TTHHHH.-CCHHC CS Methyltr_RsmB-F 82 riLlDaPCsgtgvirrdpdvklrrkekdia 111 ++Ll P sg g + + + k+r +++ tr|A7SY09|A7SY09_NEMVE 195 KLLLTTPVSGWGLDEEKLEEKVREASWELK 224 778888888888877777777666655555 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (200 nodes) Target sequences: 24428 (8257945 residues searched) Passed MSV filter: 719 (0.0294334); expected 488.6 (0.02) Passed bias filter: 517 (0.0211642); expected 488.6 (0.02) Passed Vit filter: 53 (0.00216964); expected 24.4 (0.001) Passed Fwd filter: 21 (0.000859669); expected 0.2 (1e-05) Initial search space (Z): 24428 [actual number of targets] Domain search space (domZ): 21 [number of targets reported over threshold] # CPU time: 0.18u 0.01s 00:00:00.19 Elapsed: 00:00:00.07 # Mc/sec: 23594.13 // [ok]