# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/Methyltr_RsmB-F.hmm.txt
# target sequence database: proteomes/Thermococcus_kodakarensis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Methyltr_RsmB-F [M=200]
Accession: PF01189.16
Description: 16S rRNA methyltransferase RsmB/F
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
8.1e-66 218.6 0.0 1.1e-65 218.1 0.0 1.2 1 tr|Q5JDP5|Q5JDP5_THEKO tRNA/rRNA cytosine-C5-methylase, NOL1
1.5e-58 194.9 0.0 1.9e-58 194.5 0.0 1.1 1 tr|Q5JEW7|Q5JEW7_THEKO tRNA/rRNA cytosine-C5-methylase, NOL1
5.3e-58 193.1 0.0 6.6e-58 192.7 0.0 1.1 1 tr|Q5JI15|Q5JI15_THEKO tRNA/rRNA cytosine-C5-methylase, NOL1
4e-54 180.4 0.0 5.2e-54 180.0 0.0 1.1 1 tr|Q5JCY9|Q5JCY9_THEKO tRNA/rRNA cytosine-C5-methylase, NOL1
1.4e-49 165.6 0.0 2e-49 165.0 0.0 1.2 1 tr|Q5JDB4|Q5JDB4_THEKO tRNA/rRNA cytosine-C5-methylase, NOL1
3.5e-06 23.9 0.0 0.00011 19.0 0.0 2.2 1 tr|Q5JJ78|Q5JJ78_THEKO Probable tRNA/rRNA methyltransferase
0.00021 18.1 0.0 0.0011 15.7 0.0 1.9 2 tr|Q5JD70|Q5JD70_THEKO Met-10+ like protein OS=Thermococcus
0.00038 17.3 0.0 0.00057 16.7 0.0 1.3 1 tr|Q5JDP7|Q5JDP7_THEKO Predicted DNA methylase OS=Thermococc
0.0017 15.1 0.0 0.0025 14.6 0.0 1.1 1 tr|Q5JEE1|Q5JEE1_THEKO Protein-L-isoaspartate O-methyltransf
0.0019 15.0 0.0 0.025 11.3 0.0 2.0 2 tr|Q5JGS7|Q5JGS7_THEKO tRNA (1-methyladenosine) methyltransf
Domain annotation for each sequence (and alignments):
>> tr|Q5JDP5|Q5JDP5_THEKO tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family OS=Thermococcus kodakarensis (strain AT
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 218.1 0.0 5e-68 1.1e-65 2 199 .. 244 437 .. 243 438 .. 0.97
Alignments for each domain:
== domain 1 score: 218.1 bits; conditional E-value: 5e-68
HHH---TT-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CCCCHHHHCC--EEEEEEEE- CS
Methyltr_RsmB-F 2 llLapqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlggelfDriLlDaP 88
l+Lap+++et++Dl+aaPGgKT+h+aelm+n+g+++A d+++ R+kr++e lkr gv+ + v++aD+r+ ++ lg+e Dr+LlDaP
tr|Q5JDP5|Q5JDP5_THEKO 244 LVLAPKPGETVVDLAAAPGGKTAHMAELMENRGKIYAFDVDSARIKRMKEVLKRTGVEIAEVIKADGRNAPELLGEEIADRVLLDAP 330
68************************************************************************************* PP
-CCGGGTTT-TTHHHH.-CCHHCCHHHHHHHHHHHHHHHEEEEEEEEEEES---CTCTHHHHHHHHHH-TTEEEESSBSTTSTTSSE CS
Methyltr_RsmB-F 89 CsgtgvirrdpdvklrrkekdiaqlaklqkellsaaidllkkgGvlvYsTCsvlveEneevieeaLkkredvelvetelsepkglkl 175
C++ g+i ++p++++r +ek+i +++ lqkel+++a++llk+gG l+YsTCs+l+eEneev++ +L++++ +elv++ ++ +
tr|Q5JDP5|Q5JDP5_THEKO 331 CTSDGTIAKNPELRWRLREKNIPKVVALQKELMESAWKLLKPGGRLLYSTCSMLPEENEEVVKWFLERHPGAELVPL--NG--PYDP 413
****************************************************************************9..44..4578 PP
CEECT-EEE-TTTTS.-SEEEEEE CS
Methyltr_RsmB-F 176 geeagtlrllPhtenkdgffiakl 199
g +gt+r +Ph++ + gff+a +
tr|Q5JDP5|Q5JDP5_THEKO 414 GFLKGTMRAWPHRHRTIGFFYALI 437
888888***************975 PP
>> tr|Q5JEW7|Q5JEW7_THEKO tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family, containing RNA-binding PUA domain OS=T
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 194.5 0.0 8.4e-61 1.9e-58 3 200 .] 193 381 .. 191 381 .. 0.91
Alignments for each domain:
== domain 1 score: 194.5 bits; conditional E-value: 8.4e-61
HH---TT-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CCCCHHHHCC--EEEEEEEE-- CS
Methyltr_RsmB-F 3 lLapqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlggelfDriLlDaPC 89
+L+p ee+ i+D++aaPGgKT+hia+lm+n+g+++A+d++++Rl++++e lkrLgv+n+ ++++Dark ++ + D+iLlDaPC
tr|Q5JEW7|Q5JEW7_THEKO 193 VLEPSEEDLIIDMAAAPGGKTSHIAQLMQNRGEIIAIDKSRNRLRKMEEELKRLGVKNVRLIHMDARKLPELGIE--ADKILLDAPC 277
79*******************************************************************998776..9********* PP
CCGGGTTT-TTHHHH.-CCHHCCHHHHHHHHHHHHHHHEEEEEEEEEEES---CTCTHHHHHHHHHH-TTEEEESSBSTTSTTSSEC CS
Methyltr_RsmB-F 90 sgtgvirrdpdvklrrkekdiaqlaklqkellsaaidllkkgGvlvYsTCsvlveEneevieeaLkkredvelvetelsepkglklg 176
+++g+ + + +r++kdi + a+ q++ + aai++l+kgG+lvYsTC++ eEne+ ++++L+k + e +++ + + +g++++
tr|Q5JEW7|Q5JEW7_THEKO 278 TALGIRPK---LWETRTPKDIEATARYQRAFIWAAIKSLRKGGTLVYSTCTISYEENEANVKYMLQKGLKLEEQSVFIAS-HGIDME 360
****9655...55569***************************************************9777776663333.444444 PP
EECT-EEE-TTTTS.-SEEEEEEE CS
Methyltr_RsmB-F 177 eeagtlrllPhtenkdgffiaklk 200
+r++P+++ ++gffiakl+
tr|Q5JEW7|Q5JEW7_THEKO 361 G---VQRFYPNRHLTQGFFIAKLR 381
3...569***************96 PP
>> tr|Q5JI15|Q5JI15_THEKO tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family OS=Thermococcus kodakarensis (strain AT
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 192.7 0.0 2.9e-60 6.6e-58 2 200 .] 106 307 .. 105 307 .. 0.92
Alignments for each domain:
== domain 1 score: 192.7 bits; conditional E-value: 2.9e-60
HHH---TT-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CCCCHHHHCC--EEEEEEEE- CS
Methyltr_RsmB-F 2 llLapqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlggelfDriLlDaP 88
++L p+++e + D++aaPGgKT+++a+lm+n g ++A d+ + Rl++ nl+rLgvtnti+++ +id+ + fD+iLlDaP
tr|Q5JI15|Q5JI15_THEKO 106 VALGPKPGEVVADMAAAPGGKTSYMAQLMENGGIIYAFDVGEDRLRETRLNLSRLGVTNTILFHSSSLHIDELGVE--FDKILLDAP 190
5899******************************************************************988776..********* PP
-CCGGGTTT-TTHHHH.-CCHHCCHHHHHHHHHHHHHHHEEEEEEEEEEES---CTCTHHHHHHHHHH-TTEEEESSBSTTST.... CS
Methyltr_RsmB-F 89 CsgtgvirrdpdvklrrkekdiaqlaklqkellsaaidllkkgGvlvYsTCsvlveEneevieeaLkkredvelvetelsepk.... 171
C+g g+i+++p+ k +r+ +d++ ++ lq +ll+ + +lkkgGvlvYsTCs+++eEne vi+ +L + +vel ++++ ep
tr|Q5JI15|Q5JI15_THEKO 191 CTGSGTIHKNPERKANRTMEDVKFCQGLQMKLLEKGLSVLKKGGVLVYSTCSLEPEENEFVIQWVLDNF-EVELLPLRYGEPAltkp 276
******************************************************************998.89999998777651111 PP
.TSSECEEC.T-EEE-TTTTS.-SEEEEEEE CS
Methyltr_RsmB-F 172 .glklgeea.gtlrllPhtenkdgffiaklk 200
g++l+ee +++r++P+++ + gff+ak+k
tr|Q5JI15|Q5JI15_THEKO 277 fGIELSEEIkKARRFYPDRHGTSGFFVAKIK 307
1455555446899***************985 PP
>> tr|Q5JCY9|Q5JCY9_THEKO tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family OS=Thermococcus kodakarensis (strain AT
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 180.0 0.0 2.2e-56 5.2e-54 2 199 .. 101 304 .. 100 305 .. 0.90
Alignments for each domain:
== domain 1 score: 180.0 bits; conditional E-value: 2.2e-56
HHH---TT-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CCCCHHHHCC--EEEEEEEE- CS
Methyltr_RsmB-F 2 llLapqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlggelfDriLlDaP 88
++L+p+++e +lD++aaPG+KT ia+ m+n+g+++A+d n+ R++ +++nl+r+gv + v++ D+ + ++ +fDr+LlDaP
tr|Q5JCY9|Q5JCY9_THEKO 101 VVLDPKPGELVLDMAAAPGSKTGQIAQYMQNEGCIIANDPNRDRANVLIANLNRMGVLIARVTTRDGASFARFEN--TFDRVLLDAP 185
68********************************************************************77766..6********* PP
-CCGGGTTT-TTHHHH.-CCHHCCHHHHHHHHHHHHHHHEEEEEEEEEEES---CTCTHHHHHHHHHH-TTEEEESS....BSTTST CS
Methyltr_RsmB-F 89 CsgtgvirrdpdvklrrkekdiaqlaklqkellsaaidllkkgGvlvYsTCsvlveEneevieeaLkkredvelvet....elsepk 171
Cs+ g+ir+ + +ek + ++++ qk+l+ a lk+gGv+vYsTC++ + Eneev++++L+k+ d++l+ + ++sep+
tr|Q5JCY9|Q5JCY9_THEKO 186 CSSVGMIRKSWRFLREWREKAVVKYMNVQKRLILAGYRALKPGGVMVYSTCTIDPLENEEVVDYLLRKT-DARLERIdlpvKTSEPV 271
**********99988889*************************************************99.77776551111445555 PP
TSSECEEC.....T-EEE-TTTTS.-SEEEEEE CS
Methyltr_RsmB-F 172 glklgeea.....gtlrllPhtenkdgffiakl 199
g+e+ ++lr+ P+ +++++ffiak+
tr|Q5JCY9|Q5JCY9_THEKO 272 LEWEGKEYseelkKALRIHPNDNDTEAFFIAKI 304
555555557777899****************96 PP
>> tr|Q5JDB4|Q5JDB4_THEKO tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family, fused to N-terminal NusB regulator dom
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 165.0 0.0 8.8e-52 2e-49 2 200 .] 255 449 .. 254 449 .. 0.93
Alignments for each domain:
== domain 1 score: 165.0 bits; conditional E-value: 8.8e-52
HHH---TT-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CCCCHHHHCC--EEEEEEEE- CS
Methyltr_RsmB-F 2 llLapqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlggelfDriLlDaP 88
+L p+++e++lDl+aaPG+KT h a+lm+nkg++vAvd + Rl r++e k Lgv+n+ ++aD++ + + +e+fD+i+lDaP
tr|Q5JDB4|Q5JDB4_THEKO 255 HVLSPEPGERLLDLAAAPGSKTFHAAALMENKGEIVAVDYSYDRLMRMKEKAKVLGVKNVRFVHADGQSFRD---KEKFDKIILDAP 338
689******************************************************************954...467********* PP
-CCGGGTTT-TTHHHH.-CCHHCCHHHHHHHHHHHHHHHEEEEEEEEEEES---CTCTHHHHHHHHHH-TTEEEESSBSTTSTTSSE CS
Methyltr_RsmB-F 89 CsgtgvirrdpdvklrrkekdiaqlaklqkellsaaidllkkgGvlvYsTCsvlveEneevieeaLkkredvelvetelsepkglkl 175
Cs+ g+ r+ p+vk+r +e+ i+++ + q+++l a + l++gG + YsTCs+ ++E+ee + a+++ el + ++s +++ l
tr|Q5JDB4|Q5JDB4_THEKO 339 CSSSGTYRQFPEVKWRFDEAKIKKIISVQRNMLRNAYENLREGGEMTYSTCSIRIDEDEENVLFAINRV-GLELLDYPFSWGDRGFL 424
**************************************************************9999987.88888877766555544 PP
CEECT-EEE-TTTTS.-SEEEEEEE CS
Methyltr_RsmB-F 176 geeagtlrllPhtenkdgffiaklk 200
+ + r + h+++ ++ffiaklk
tr|Q5JDB4|Q5JDB4_THEKO 425 DIGDKVFRAWTHRHDCNSFFIAKLK 449
444455*****************96 PP
>> tr|Q5JJ78|Q5JJ78_THEKO Probable tRNA/rRNA methyltransferase OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 19.0 0.0 4.8e-07 0.00011 10 144 .. 219 341 .. 210 364 .. 0.78
Alignments for each domain:
== domain 1 score: 19.0 bits; conditional E-value: 4.8e-07
-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--.SEE.EEES-CCCCHHHHCC.--EEEEEEEE--CCGG CS
Methyltr_RsmB-F 10 etilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvt.nti.vleaDarkidkvlgg.elfDriLlDaPCsgtg 93
++lD+ + Gg h a ++ + +vvAvd++ + ++ v+en k gv+ +++ ++ +++++ e+fD ++lD P
tr|Q5JJ78|Q5JJ78_THEKO 219 MRVLDVFTYTGGFAIHAA--VAGADEVVAVDKSPWAINMVKENAKLNGVEdKMKyIVGSAFPVMEEMIKRgEKFDIVILDPPA---- 299
568888888888877754..368899*****************99999984333144444444455554369********995.... PP
GTTT-TTHHHH.-CCHHCCHHHHHHHHHHHHHHHEEEEEEEEEEES---CT CS
Methyltr_RsmB-F 94 virrdpdvklrrkekdiaqlaklqkellsaaidllkkgGvlvYsTCsvlve 144
+ ++ekd+++ + ++ a ++l+k+gG+lv + Cs +v+
tr|Q5JJ78|Q5JJ78_THEKO 300 ---------FVQHEKDLKRGLRAYFNVNYAGLQLVKEGGILVTASCSQHVD 341
.........346777788888888888899999**************9997 PP
>> tr|Q5JD70|Q5JD70_THEKO Met-10+ like protein OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) OX
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.7 0.0 4.8e-06 0.0011 7 88 .. 180 255 .. 175 262 .. 0.83
2 ? 3.1 0.0 0.035 8 105 138 .. 246 279 .. 243 304 .. 0.81
Alignments for each domain:
== domain 1 score: 15.7 bits; conditional E-value: 4.8e-06
-TT-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CCCCHHHHCC--EEEEEEEE- CS
Methyltr_RsmB-F 7 qeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlggelfDriLlDaP 88
q++e ++D+ a+ G + l k+++ v+A d+n + ++ ++en k n+i + +D+rk+ g+++ Dr+++ P
tr|Q5JD70|Q5JD70_THEKO 180 QPGEIVFDMFAGVGPYSIL---LAKKAKLVFACDINPWAVRYLEENKKLNKTPNVIPILGDVRKV---AGQIKADRVIMNLP 255
788999****999976555...457899*****************976555559999******99...556668***99888 PP
== domain 2 score: 3.1 bits; conditional E-value: 0.035
.-CCHHCCHHHHHHHHHHHHHHHEEEEEEEEEEE CS
Methyltr_RsmB-F 105 rkekdiaqlaklqkellsaaidllkkgGvlvYsT 138
+ ++ i++l k + l+ a+ ++k+gG++ Y
tr|Q5JD70|Q5JD70_THEKO 246 KADRVIMNLPKFADRFLKEAMMSVKSGGIVHYYG 279
56778999999999****************9965 PP
>> tr|Q5JDP7|Q5JDP7_THEKO Predicted DNA methylase OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.7 0.0 2.5e-06 0.00057 9 135 .. 48 169 .. 40 174 .. 0.68
Alignments for each domain:
== domain 1 score: 16.7 bits; conditional E-value: 2.5e-06
T-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--.SEEEEES-CCCCHHHHCC--EEEEEEEE--CCGGG CS
Methyltr_RsmB-F 9 eetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvt.ntivleaDarkidkvlggelfDriLlDaPCsgtgv 94
++ i Dl a+ G i +++ + +v+Av+++ke l+ en + Lgv+ ++ ++aD+++++ +D +++ P + v
tr|Q5JDP7|Q5JDP7_THEKO 48 GKVIADLGAGTGV--LGIGAVLLGAENVYAVERDKEALEIARENARSLGVEdKIEFVNADVSEFS-----VNVDTVIMNPPFGS-QV 126
5566666665553..346667778899***********************977899*******92.....34899999877644.44 PP
TTT-TTHHH.H.-CCHHCCHHHHHHHHHHHHHHH.EEEEEEEE CS
Methyltr_RsmB-F 95 irrdpdvkl.rrkekdiaqlaklqkellsaaidl.lkkgGvlv 135
++ d+ + + +d+ + +l k + a i+ ++ +G+++
tr|Q5JDP7|Q5JDP7_THEKO 127 KHADRPFLIkAFEVSDVVYSIHLAKPEVRAFIEAfVRDNGFVI 169
4444433220334456666666666666665554157777765 PP
>> tr|Q5JEE1|Q5JEE1_THEKO Protein-L-isoaspartate O-methyltransferase OS=Thermococcus kodakarensis (strain ATCC BAA-918
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.6 0.0 1.1e-05 0.0025 6 87 .. 75 152 .. 68 155 .. 0.87
Alignments for each domain:
== domain 1 score: 14.6 bits; conditional E-value: 1.1e-05
--TT-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CCCCHHHHCC--EEEEEEEE CS
Methyltr_RsmB-F 6 pqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlggelfDriLlDa 87
++++ +l++ ++ G ++i+el k v+ +++ e ++ +nl+r gv+n+ v+ +D++k + ++ +Dri++ a
tr|Q5JEE1|Q5JEE1_THEKO 75 LKPGMNVLEIGTGSGWNAALISEL--VKTDVYTIERIPELVEFARRNLERAGVKNVHVILGDGTKG--FPPKAPYDRIIVTA 152
55667799999999**********..5678*********************************987..66677799999865 PP
>> tr|Q5JGS7|Q5JGS7_THEKO tRNA (1-methyladenosine) methyltransferase OS=Thermococcus kodakarensis (strain ATCC BAA-918
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 11.3 0.0 0.00011 0.025 8 88 .. 93 171 .. 89 175 .. 0.86
2 ? 1.4 0.0 0.12 26 119 144 .. 175 201 .. 172 238 .. 0.78
Alignments for each domain:
== domain 1 score: 11.3 bits; conditional E-value: 0.00011
TT-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CCCCHHHHCC--EEEEEEEE- CS
Methyltr_RsmB-F 8 eeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlggelfDriLlDaP 88
+++t++++ a+ G+ T ++a+ + ++g+v+ ++ k + ++n++ g + vl + + + + ++ D+i lD P
tr|Q5JGS7|Q5JGS7_THEKO 93 PGDTVIEAGAGSGALTIFLANAVGPTGKVISYEVRKDFYEIAKKNVELAGFSDRVVL-KNKSIY-DGIDEKEADHIVLDLP 171
6899*******************************************9999955555.555555.45666789******98 PP
== domain 2 score: 1.4 bits; conditional E-value: 0.12
HHHHHHHHHEEEEEEEE.EEES---CT CS
Methyltr_RsmB-F 119 ellsaaidllkkgGvlv.YsTCsvlve 144
++l a+d+l++gG+ v Y+ C +v
tr|Q5JGS7|Q5JGS7_THEKO 175 NVLPHAVDVLRPGGYFVaYTPCMNQVH 201
5788899*******9775888877765 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (200 nodes)
Target sequences: 2301 (637680 residues searched)
Passed MSV filter: 79 (0.0343329); expected 46.0 (0.02)
Passed bias filter: 70 (0.0304216); expected 46.0 (0.02)
Passed Vit filter: 18 (0.00782269); expected 2.3 (0.001)
Passed Fwd filter: 10 (0.00434594); expected 0.0 (1e-05)
Initial search space (Z): 2301 [actual number of targets]
Domain search space (domZ): 10 [number of targets reported over threshold]
# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.01
# Mc/sec: 12753.60
//
[ok]