# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/Methyltr_RsmB-F.hmm.txt
# target sequence database: proteomes/Xenopus_tropicalis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Methyltr_RsmB-F [M=200]
Accession: PF01189.16
Description: 16S rRNA methyltransferase RsmB/F
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.2e-77 259.6 0.0 3.6e-77 259.0 0.0 1.3 1 tr|F7D8B1|F7D8B1_XENTR NOP2 nucleolar protein OS=Xenopu
3.6e-44 151.2 0.0 5.1e-44 150.7 0.0 1.3 1 tr|F6RCC7|F6RCC7_XENTR NOP2/Sun RNA methyltransferase f
1.1e-38 133.3 0.0 2.1e-37 129.1 0.0 2.2 1 sp|Q28E61|NSUN2_XENTR tRNA (cytosine(34)-C(5))-methylt
6.8e-29 101.4 0.0 8.5e-29 101.0 0.0 1.1 1 tr|F6SQ66|F6SQ66_XENTR NOP2/Sun RNA methyltransferase f
3.7e-27 95.7 0.0 6.6e-27 94.9 0.0 1.4 1 tr|F6TNA7|F6TNA7_XENTR NOP2/Sun RNA methyltransferase f
9.2e-27 94.4 0.0 1.8e-26 93.5 0.0 1.5 2 sp|Q66KI9|NSUN4_XENTR 5-methylcytosine rRNA methyltran
5.7e-09 36.3 0.0 1.6e-08 34.8 0.0 1.7 2 tr|A0A1B8XSV6|A0A1B8XSV6_XENTR Uncharacterized protein (Fragmen
4.2e-08 33.5 0.4 8.6e-07 29.2 0.2 2.5 2 tr|F6ZAA6|F6ZAA6_XENTR NOP2/Sun RNA methyltransferase f
1.4e-06 28.6 0.0 2.5e-06 27.7 0.0 1.4 1 tr|F6PSG1|F6PSG1_XENTR Methyltransferase-like 15 OS=Xen
------ inclusion threshold ------
0.048 13.7 0.1 0.087 12.9 0.1 1.4 1 tr|F6YXL0|F6YXL0_XENTR Sodium/hydrogen exchanger OS=Xen
0.078 13.0 0.0 0.13 12.3 0.0 1.4 1 tr|Q6P623|Q6P623_XENTR Fibrillarin OS=Xenopus tropicali
0.093 12.8 0.0 0.15 12.1 0.0 1.3 1 tr|Q6DFS3|Q6DFS3_XENTR tRNA (adenine(58)-N(1))-methyltr
Domain annotation for each sequence (and alignments):
>> tr|F7D8B1|F7D8B1_XENTR NOP2 nucleolar protein OS=Xenopus tropicalis OX=8364 GN=nop2 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 259.0 0.0 1.8e-80 3.6e-77 1 200 [] 355 563 .. 355 563 .. 0.94
Alignments for each domain:
== domain 1 score: 259.0 bits; conditional E-value: 1.8e-80
HHHH---TT-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CCCCHHHHCC--EEEEEEEE CS
Methyltr_RsmB-F 1 allLapqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlggelfDriLlDa 87
+++Lapqe+e++lD+c+aPGgKT+++a+lmkn+g vvA+d+n+ Rl++v+ nl+rLgvtn i++++D+r+i+kvlgg fDr+LlDa
tr|F7D8B1|F7D8B1_XENTR 355 VIALAPQENERVLDMCCAPGGKTSYMAQLMKNTGIVVANDMNADRLRSVVGNLHRLGVTNCIISNYDGRQISKVLGG--FDRVLLDA 439
589*************************************************************************9..******** PP
--CCGGGTTT-TTHHHH.-CCHHCCHHHHHHHHHHHHHHHE....EEEEEEEEEES---CTCTHHHHHHHHHH-TTEEEESSBSTTS CS
Methyltr_RsmB-F 88 PCsgtgvirrdpdvklrrkekdiaqlaklqkellsaaidll....kkgGvlvYsTCsvlveEneevieeaLkkredvelvetelsep 170
PCsgtg+i++dp+vk++++ +d++++a+ qkel+ +aid l ++gG++vY+TCs++veEne v+++aLkkr +v+lv+t l +
tr|F7D8B1|F7D8B1_XENTR 440 PCSGTGIISKDPAVKTNKSVQDVQRCAHIQKELILSAIDALdaqsQTGGFMVYCTCSITVEENECVVDYALKKR-NVKLVPTGLDFG 525
*****************************************99999***************************9.9******65544 PP
TTSSECEEC..............T-EEE-TTTTS.-SEEEEEEE CS
Methyltr_RsmB-F 171 kglklgeea..............gtlrllPhtenkdgffiaklk 200
k+ +++r++Pht+n+dgffiakl+
tr|F7D8B1|F7D8B1_XENTR 526 KE------GfvrfkerrfhpslrQARRFYPHTHNMDGFFIAKLR 563
43......3333444789***999******************96 PP
>> tr|F6RCC7|F6RCC7_XENTR NOP2/Sun RNA methyltransferase family member 6 OS=Xenopus tropicalis OX=8364 GN=nsun6 PE=3 SV
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 150.7 0.0 2.5e-47 5.1e-44 3 178 .. 229 413 .. 227 464 .. 0.81
Alignments for each domain:
== domain 1 score: 150.7 bits; conditional E-value: 2.5e-47
HH---TT-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CCCCHHHHCC............ CS
Methyltr_RsmB-F 3 lLapqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlgg............ 77
+L+pq++e+ilD+caaPGgKTthia lmk++g+v+A+d+ +++++++++n + L ++ ++ ++ +k ++
tr|F6RCC7|F6RCC7_XENTR 229 VLNPQPGERILDMCAAPGGKTTHIATLMKDQGEVIAMDKIANKVEKIKHNASVLKLKCIKAFCFNSTKAVRDQNSpseqgdgppflp 315
8****************************************************99997777766666554333333457889***** PP
--EEEEEEEE--CCGGGTTT-TTHHHH.-CCHHCCHHHHHHHHHHHHHHHEEEEEEEEEEES---CTCTHHHHHHHHHH-TTEEEES CS
Methyltr_RsmB-F 78 elfDriLlDaPCsgtgvirrdpdvklrrkekdiaqlaklqkellsaaidllkkgGvlvYsTCsvlveEneevieeaLkkredvelve 164
+ fDriLlDaPCsg+g ++p++ + k++++++ lq++l++aa++ll++gG+lvYsTC+v++ Enee+++ aLk+ + el++
tr|F6RCC7|F6RCC7_XENTR 316 KSFDRILLDAPCSGMG---QRPNMVCPFSLKELTSYQPLQRKLFTAAVELLRPGGTLVYSTCTVTLSENEEQVAWALKTFPCLELQP 399
**************98...688988999********************************************************999 PP
SBSTTSTTSSECEE CS
Methyltr_RsmB-F 165 telsepkglklgee 178
e + + + lg e
tr|F6RCC7|F6RCC7_XENTR 400 QEPHVGGEGMLGAE 413
87665544444444 PP
>> sp|Q28E61|NSUN2_XENTR tRNA (cytosine(34)-C(5))-methyltransferase OS=Xenopus tropicalis OX=8364 GN=nsun2 PE=2 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 129.1 0.0 1.1e-40 2.1e-37 2 199 .. 172 429 .. 171 430 .. 0.89
Alignments for each domain:
== domain 1 score: 129.1 bits; conditional E-value: 1.1e-40
HHH---TT-EEEECS-TT-HHHHHHHHHTT.......TTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CCCCHHHHCC..... CS
Methyltr_RsmB-F 2 llLapqeeetilDlcaaPGgKTthiaelmk.......nkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlgg..... 77
+lL+ q++ +ilD+caaPG+KT+ i e+++ ++g v+A+d++++R +++ krL+ ++v++ Da+ i++ l +
sp|Q28E61|NSUN2_XENTR 172 VLLKVQPHHKILDMCAAPGSKTAQIIEMLHadmnvpfPEGFVIANDVDNKRCYLLVHQAKRLNSPCIMVVNHDASSIPRLLVEnngsr 259
5899***********************976222233346889*************************************999999999 PP
..--EEEEEEEE--CCGGGTTT-TTHHHH.-CCHHCCHHHHHHHHHHHHHHHEEEEEEEEEEES---CTCTHHHHHHHHHH-T.TEEE CS
Methyltr_RsmB-F 78 ..elfDriLlDaPCsgtgvirrdpdvklrrkekdiaqlaklqkellsaaidllkkgGvlvYsTCsvlveEneevieeaLkkre.dvel 162
+DriL D+PCsg g++r++ dv + + + ql+ lq ++ + +++l +gG +vYsTCs+++ E+e+vi+++L k e el
sp|Q28E61|NSUN2_XENTR 260 evLYYDRILCDVPCSGDGTLRKNIDVWKKWTTLNSLQLHGLQIRIATRGVEQLAEGGRMVYSTCSLNPVEDEAVIASLLDKSEgSLEL 347
88889*********************6666888999*******************************************998635677 PP
ESSBSTTSTTSSECEEC..............................................T-EEE-TTTTS.-SEEEEEE CS
Methyltr_RsmB-F 163 vetelsepkglklgeea..............................................gtlrllPhtenkdgffiakl 199
++ +se glk + +r+lPh++n+ gff+a l
sp|Q28E61|NSUN2_XENTR 348 ADV-ASEIPGLKWMPGItqwkvmtkeghwyekwediptsrhtqirptmfppkdeeklksmnlnRCMRILPHHQNTGGFFVAVL 429
777.666666655444455899999************************************99999**************987 PP
>> tr|F6SQ66|F6SQ66_XENTR NOP2/Sun RNA methyltransferase family member 3 OS=Xenopus tropicalis OX=8364 GN=nsun3 PE=3 SV
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 101.0 0.0 4.2e-32 8.5e-29 2 199 .. 114 319 .. 113 320 .. 0.81
Alignments for each domain:
== domain 1 score: 101.0 bits; conditional E-value: 4.2e-32
HHH---TT-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--....SEEEEES-CCCCHHHHCC--EEEEE CS
Methyltr_RsmB-F 2 llLapqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvt....ntivleaDarkidkvlggelfDriL 84
l+L+ +++e +lD+caaPGgK ++ ++ g++ ++ + R + ++++l+ + + ++ +e D+r k+ +g ++D++L
tr|F6SQ66|F6SQ66_XENTR 114 LALDVRDGENWLDMCAAPGGKSLAFLQC-ATPGRLHCNEPDLPRSRWLKQTLESFVPEtdrnHIFFSELDGRLLGKFHSG-FYDKVL 198
6899******************999999.999********************9986544555788999***********8.****** PP
EEE--CCGGGTTT-TTHHHH.-CCHH...CCHHHHHHHHHHHHHHHEEEEEEEEEEES---CTCTHHHHHHHHHH-TTEEEESSBST CS
Methyltr_RsmB-F 85 lDaPCsgtgvirrdpdvklrrkekdi...aqlaklqkellsaaidllkkgGvlvYsTCsvlveEneevieeaLkkredvelvetels 168
+DaPCs dv+ + + i ++l lq ell +a++ l++gG lvYsTC++ +En+ vi ++L++ +v +++ s
tr|F6SQ66|F6SQ66_XENTR 199 VDAPCSNDRSWLFSSDVQ--QAAARIsqrKSLPVLQTELLRSAVEALRPGGSLVYSTCTLSRAENTDVITNILNSCSNVVPMDL--S 281
********9999999995..444444111568889***************************************9988765555..2 PP
TSTTSSECEEC.......T-EEE-TTT.TS.-SEEEEEE CS
Methyltr_RsmB-F 169 epkglklgeea.......gtlrllPht.enkdgffiakl 199
+ ++l++e l +lP++ ++ ++f+akl
tr|F6SQ66|F6SQ66_XENTR 282 S-MASALSHEFtfapgipHGLLVLPDNgKSWGPMFVAKL 319
2.2333333333345666566777776234567888887 PP
>> tr|F6TNA7|F6TNA7_XENTR NOP2/Sun RNA methyltransferase family member 5 OS=Xenopus tropicalis OX=8364 GN=nsun5 PE=3 SV
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 94.9 0.0 3.3e-30 6.6e-27 2 199 .. 222 424 .. 221 425 .. 0.81
Alignments for each domain:
== domain 1 score: 94.9 bits; conditional E-value: 3.3e-30
HHH---TT-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CCCC.HHHHCC--EEEEEEEE CS
Methyltr_RsmB-F 2 llLapqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarki.dkvlggelfDriLlDa 87
llLap + ++D+caaPG KT+ +a++++nkg+++A d +++Rl + + l r gvt + + D + +++ +++ +iL+D
tr|F6TNA7|F6TNA7_XENTR 222 LLLAPPVGSCVIDACAAPGNKTSQLAAMLQNKGKLFAFDLDTKRLATMSTLLLRAGVTCQELANQDFLTVsPEDPKYQKVSHILVDP 308
6899999***********************************************************866515667779********* PP
--CCGGGTTT-TTH...HHH.-CCHHCCHHHHHHHHHHHHHHHEEEEEEEEEEES---CTCTHHHHHHHHHH-TTEEEESS.BSTTS CS
Methyltr_RsmB-F 88 PCsgtgvirrdpdv...klrrkekdiaqlaklqkellsaaidllkkgGvlvYsTCsvlveEneevieeaLkkredvelvet.elsep 170
Csg g+ ++ + + + + + + +l+ q++ ls a+ + +vYsTCs++ +Eneev+ ++L+++++ l++ + +
tr|F6TNA7|F6TNA7_XENTR 309 SCSGSGIPDQMRILadkEESAQSERLEALSGFQRRALSHALSF-PSVQRVVYSTCSIHQQENEEVVRDILEQHPHFSLIDAlPSWPM 394
*******998876511134445667888888999999988765.455579**************************99876133344 PP
TTSSECEEC.T-EEE-TTTTS.-SEEEEEE CS
Methyltr_RsmB-F 171 kglklgeea.gtlrllPhtenkdgffiakl 199
+gl++ ++ lr ++gff+a +
tr|F6TNA7|F6TNA7_XENTR 395 HGLNIFPGSsCCLRATLSDTLTNGFFVAVF 424
555554444235666666668888888876 PP
>> sp|Q66KI9|NSUN4_XENTR 5-methylcytosine rRNA methyltransferase NSUN4 OS=Xenopus tropicalis OX=8364 GN=nsun4 PE=2 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -3.3 0.0 3.8 7.6e+03 41 77 .. 134 170 .. 129 182 .. 0.66
2 ! 93.5 0.0 8.9e-30 1.8e-26 2 157 .. 189 350 .. 188 402 .. 0.84
Alignments for each domain:
== domain 1 score: -3.3 bits; conditional E-value: 3.8
SSCCCHHHHHHHHHHTT--SEEEEES-CCCCHHHHCC CS
Methyltr_RsmB-F 41 ankeRlkrvaenlkrLgvtntivleaDarkidkvlgg 77
a+k+ + ++ + l+ +t + +++D++++++ ++
sp|Q66KI9|NSUN4_XENTR 134 AEKTQATNLLSSLSNTKLTCFKFSRGDISRFPQSRSD 170
5566666666667666777777788888888777665 PP
== domain 2 score: 93.5 bits; conditional E-value: 8.9e-30
HHH---TT-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHH....HTT--..SEEEEES-CCCCHHHHCC--EEEE CS
Methyltr_RsmB-F 2 llLapqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlk....rLgvt..ntivleaDarkidkvlggelfDri 83
l+L+ q++ +lDlcaaPGgKT +++ +n + + A+d +++R +r+++ l+ r t ++ +++ D+r + + +++Dr+
sp|Q66KI9|NSUN4_XENTR 189 LALDVQHGHSVLDLCAAPGGKTLALLQT-ENCQYLAANDLSTSRSSRLHRVLRsyvpRAQRTehKVCITSQDGRLWGDAEA-NTYDRV 274
68999**********************9.88889*******999888877665211233333334778899**99988888.59**** PP
EEEE--CC..GGGTTT-TTHHHH.-CCHHCCHHHHHHHHHHHHHHHEEEEEEEEEEES---CTCTHHHHHHHHHH- CS
Methyltr_RsmB-F 84 LlDaPCsg..tgvirrdpdvklrrkekdiaqlaklqkellsaaidllkkgGvlvYsTCsvlveEneevieeaLkkr 157
L+D+PC++ ++ ++++ r + k+ + l lq ell a + +++gG +vYsTCs+ ne v+e+a +
sp|Q66KI9|NSUN4_XENTR 275 LVDVPCTTdrHSLLEEENNIFHRIRTKQRQMLPLLQAELLVAGLRAVRPGGEVVYSTCSLSQLQNECVVERAVELA 350
*******83357899*****8888999999999*************************************998654 PP
>> tr|A0A1B8XSV6|A0A1B8XSV6_XENTR Uncharacterized protein (Fragment) OS=Xenopus tropicalis OX=8364 GN=XENTR_v900296902m
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.9 0.0 1.4 2.9e+03 40 77 .. 105 142 .. 95 155 .. 0.68
2 ! 34.8 0.0 8.1e-12 1.6e-08 2 83 .. 161 249 .. 160 252 .. 0.69
Alignments for each domain:
== domain 1 score: -1.9 bits; conditional E-value: 1.4
ESSCCCHHHHHHHHHHTT--SEEEEES-CCCCHHHHCC CS
Methyltr_RsmB-F 40 dankeRlkrvaenlkrLgvtntivleaDarkidkvlgg 77
+a+k+ + ++ + l+ +t + +++D++++++ ++
tr|A0A1B8XSV6|A0A1B8XSV6_XENTR 105 NAEKTQATNLLSSLSNTKLTCFKFSRGDISRFPQSRSD 142
45566666677777777777778888888888887766 PP
== domain 2 score: 34.8 bits; conditional E-value: 8.1e-12
HHH---TT-EEEECS-TT-HHHHHHHHHTTT..TSEEEEEESSCCCHHHHHHHHH....HTT--..SEEEEES-CCCCH CS
Methyltr_RsmB-F 2 llLapqeeetilDlcaaPGgKTthiaelmkn..kgtvvAvdankeRlkrvaenlk....rLgvt..ntivleaDarkid 72
l+L+ q++ +lDlcaaPGgKT +++ ++ ++ v A+d +++R +r+++ l+ r t ++ +++ D+r
tr|A0A1B8XSV6|A0A1B8XSV6_XENTR 161 LALDVQHGHSVLDLCAAPGGKTLALLQTENClqQNIVAANDWSTSRSSRLHRVLRsyvpRAQRTehKVYITSQDGRLWG 239
68999*********************99554216668899999999888877655111122222334666777777776 PP
HHHCC--EEEE CS
Methyltr_RsmB-F 73 kvlggelfDri 83
+ + +++Dr+
tr|A0A1B8XSV6|A0A1B8XSV6_XENTR 240 DAEA-NTYDRV 249
6655.367776 PP
>> tr|F6ZAA6|F6ZAA6_XENTR NOP2/Sun RNA methyltransferase family member 7 OS=Xenopus tropicalis OX=8364 GN=nsun7 PE=3 SV
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 2.6 0.0 0.06 1.2e+02 78 95 .. 267 284 .. 231 297 .. 0.70
2 ! 29.2 0.2 4.3e-10 8.6e-07 24 199 .. 284 480 .. 273 481 .. 0.54
Alignments for each domain:
== domain 1 score: 2.6 bits; conditional E-value: 0.06
--EEEEEEEE--CCGGGT CS
Methyltr_RsmB-F 78 elfDriLlDaPCsgtgvi 95
+l D i++ aPCsg +
tr|F6ZAA6|F6ZAA6_XENTR 267 NLDDDIIVAAPCSGYILA 284
56699********98764 PP
== domain 2 score: 29.2 bits; conditional E-value: 4.3e-10
HHHHHH.TTTTSEEEEEES.SCCCHHHHHHHHHHTT--SEEEEES-CCCCHHHHCC.--EEEEEEEE--CCGGG.......TTT-TT CS
Methyltr_RsmB-F 24 thiael.mknkgtvvAvda.nkeRlkrvaenlkrLgvtntivleaDarkidkvlgg.elfDriLlDaPCsgtgv.......irrdpd 100
+h++ l ++n+ +++ + ++ R +++ e +g++n+++l+ + d ++ iLl sg gv ++++ d
tr|F6ZAA6|F6ZAA6_XENTR 284 AHMSVLtNQNACRIFVCGIkSEARERALLELFADMGCKNIKLLKESFTDLDPSDPRlQKAKVILLLPQSSGSGVsdpvqfvLNQHGD 370
666666445555565554414567777777777777777777777666665444442333334444445666651111111344444 PP
HHHH.-.......CCHHCCHHHHHHHHHHHHHHHE..EEEEEEEEEES---CTCTHHHHHHHHHH-TTEEEESS.BSTTSTTSSECE CS
Methyltr_RsmB-F 101 vklrrk.......ekdiaqlaklqkellsaaidll..kkgGvlvYsTCsvlveEneevieeaLkkredvelvet.elsepkglklge 177
l+++ +++l+k+q l+ a + k lvY+TCsv eEne vi++aL ++++ + + t ++ +p++ l+
tr|F6ZAA6|F6ZAA6_XENTR 371 TSLLQDfsqgsvgTDKLNALSKQQVTELTHA---MtfNKVQALVYCTCSVYHEENEDVINQALGQKPESNKILTyRIGSPVI-PLSS 453
4444431111110112223333333333333...23455568*********************9888766554404555444.4444 PP
EC......T-EEE-TTTTS.-SEEEEEE CS
Methyltr_RsmB-F 178 ea......gtlrllPhtenkdgffiakl 199
+ + +++ P + ++gff+a l
tr|F6ZAA6|F6ZAA6_XENTR 454 SEltllsdKFIKVQPSE-TTNGFFLAVL 480
43467766677888877.8899999977 PP
>> tr|F6PSG1|F6PSG1_XENTR Methyltransferase-like 15 OS=Xenopus tropicalis OX=8364 GN=mettl15 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 27.7 0.0 1.2e-09 2.5e-06 3 92 .. 56 148 .. 54 162 .. 0.86
Alignments for each domain:
== domain 1 score: 27.7 bits; conditional E-value: 1.2e-09
HH---TT-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CCCCHHHHCC.....--EEEEE CS
Methyltr_RsmB-F 3 lLapqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlgg.....elfDriL 84
+Lapqe++tilDl + Gg Tt i++ +++ +v+A+d++ ++ + g + ++ l + ++ ++ l+ +D +L
tr|F6PSG1|F6PSG1_XENTR 56 CLAPQEGQTILDLTFGAGGHTTSILKR-ASNIKVLALDRDPAAFAIAQQLAHSCGHN-IQPLLGRFSESKDLLTSagvepGSIDGVL 140
69************************8.88899*******99887666666777766.998999999888887766788889***** PP
EEE--CCG CS
Methyltr_RsmB-F 85 lDaPCsgt 92
lDa Cs++
tr|F6PSG1|F6PSG1_XENTR 141 LDAGCSSM 148
******86 PP
>> tr|F6YXL0|F6YXL0_XENTR Sodium/hydrogen exchanger OS=Xenopus tropicalis OX=8364 GN=slc9a3 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.9 0.1 4.3e-05 0.087 102 187 .. 536 629 .. 496 641 .. 0.77
Alignments for each domain:
== domain 1 score: 12.9 bits; conditional E-value: 4.3e-05
HHH.-CCHHCCHHHHHHHHHHHHHHHEEEEEEEEEEES---CTCTHHHHHHHHHH-TTEEEESSBSTTSTTSSECEEC......... CS
Methyltr_RsmB-F 102 klrrkekdiaqlaklqkellsaaidllkkgGvlvYsTCsvlveEneevieeaLkkredvelvetelsepkglklgeea......... 179
k r+ +di + ++lq+ l + +++ +Ys v+v+E+e++ +e+ +++ + +l++++++++ + ++++ +
tr|F6YXL0|F6YXL0_XENTR 536 KSVRDVEDILSHHTLQQYLYKP-----RRQQKHLYSRHEVTVDEDEKQAKEIFQRTMKKRLESFKTTKFGRKHVKKINknykkdlgq 617
3447777888887777777654.....4445569******************************99998887777666555666666 PP
....T-EEE-TT CS
Methyltr_RsmB-F 180 ....gtlrllPh 187
+t+++lP+
tr|F6YXL0|F6YXL0_XENTR 618 rkrnSTMNMLPN 629
666666666665 PP
>> tr|Q6P623|Q6P623_XENTR Fibrillarin OS=Xenopus tropicalis OX=8364 GN=fbl PE=2 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.3 0.0 6.5e-05 0.13 7 86 .. 162 240 .. 157 268 .. 0.79
Alignments for each domain:
== domain 1 score: 12.3 bits; conditional E-value: 6.5e-05
-TT-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CCCCHHHHCC.--EEEEEEE CS
Methyltr_RsmB-F 7 qeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlgg.elfDriLlD 86
+++ ++l l aa G +h+++++ ++g v+Av+ +++ + +++ k+ tn+i + Dar+++k+ ++D + D
tr|Q6P623|Q6P623_XENTR 162 KPGAKVLYLGAASGTTVSHVSDVVGPEGLVYAVEFSHRSGRDLINVAKK--RTNIIPVIEDARHPHKYRMLvGMVDVVFAD 240
567789999*************************987665555544433..345677788999998875432466666655 PP
>> tr|Q6DFS3|Q6DFS3_XENTR tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A OS=Xenopus tropicalis OX=
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.1 0.0 7.5e-05 0.15 2 89 .. 97 184 .. 96 200 .. 0.86
Alignments for each domain:
== domain 1 score: 12.1 bits; conditional E-value: 7.5e-05
HHH---TT-EEEECS-TT-HHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--S.EEEEES-CCCCHHHHCC--EEEEEEEE CS
Methyltr_RsmB-F 2 llLapqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtn.tivleaDarkidkvlggelfDriLlDa 87
++L+++++ + + ++ G+ i ++++g+++ v+ +++R+++ +e ++ v + ++v + D+ k ++g D + lD
tr|Q6DFS3|Q6DFS3_XENTR 97 MMLELKPGSVVCESGTGSGSLSHAIIRTVAPTGHLYTVEFHQQRAEKAIEEFRQHKVDHlVTVKNQDVCKHGFGVTG-IADAVFLDI 182
67888888888899999999999999999*********************9999999862689999**999888887.89******9 PP
-- CS
Methyltr_RsmB-F 88 PC 89
P
tr|Q6DFS3|Q6DFS3_XENTR 183 PS 184
96 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (200 nodes)
Target sequences: 24182 (11782085 residues searched)
Passed MSV filter: 796 (0.032917); expected 483.6 (0.02)
Passed bias filter: 568 (0.0234885); expected 483.6 (0.02)
Passed Vit filter: 45 (0.00186089); expected 24.2 (0.001)
Passed Fwd filter: 12 (0.000496237); expected 0.2 (1e-05)
Initial search space (Z): 24182 [actual number of targets]
Domain search space (domZ): 12 [number of targets reported over threshold]
# CPU time: 0.20u 0.01s 00:00:00.21 Elapsed: 00:00:00.09
# Mc/sec: 26182.41
//
[ok]