# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/Methyltransf_10.hmm.txt # target sequence database: proteomes/Amphimedon_queenslandica.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Methyltransf_10 [M=299] Accession: PF05971.11 Description: Protein of unknown function (DUF890) Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.9e-68 230.1 0.0 1.3e-67 229.6 0.0 1.2 1 tr|A0A1X7U5N0|A0A1X7U5N0_AMPQE U6 small nuclear RNA (adenine-(4 Domain annotation for each sequence (and alignments): >> tr|A0A1X7U5N0|A0A1X7U5N0_AMPQE U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase OS=Amphimedon queenslandic # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 229.6 0.0 2.9e-72 1.3e-67 7 297 .. 1 286 [. 1 288 [. 0.91 Alignments for each domain: == domain 1 score: 229.6 bits; conditional E-value: 2.9e-72 XXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXX..XX...XXXS-TTSHHHHHHHHHHHHHHHH----.---TTS----H CS Methyltransf_10 7 lhprnrhkdky.dfaalikvvPelkqfvilnp..kG...rvsidfadPlavkalnkallrefygvsewdiPdgfliPpv 79 +hprn ++++ dfa+ +k++P l+ ++i++ kG +++idf ++++ l+ a l++++g+s d+P g+l+P++ tr|A0A1X7U5N0|A0A1X7U5N0_AMPQE 1 MHPRNIFNKRKpDFAEYAKTHPALEPHLIKKAtsKGegfQYTIDFSSTQSLHELAAATLQHEFGLSV-DLPSGHLVPSI 78 8*****987666****************9865125544568*************************9.*********** PP HHHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHH.HH--EEEEEES-HHHHHHHHHHHHHT.T-TTTEE CS Methyltransf_10 80 PgradyihyvadllgkadsdisaqvraldiGvGanCiyPllGvt.eyGWrfvgsevddvslasakaivesnsklsdaik 157 P r++yih+v+dl+gk+++ i ++diG G Ci+Pll t ++ W+f+++ev++ + ++a +++ n +l+ +i tr|A0A1X7U5N0|A0A1X7U5N0_AMPQE 79 PQRLNYIHWVEDLVGKESDVI-----GIDIGCGPLCIFPLLSCTiNNNWKFIATEVQPDCTTYALENIKRN-NLKPKIT 151 ****************99988.....9**************9883578***********************.******* PP EEE--ST...-SSTTTSTT--S-EEEEEE-----SS------------...---.....---------TTTTHHHHTHH CS Methyltransf_10 158 lrkqkek...kaifdglieenerydvtlCnPPfhaslaeakagserklknlgkanktralpslnfgGqkaelyceGGev 233 + ++ k ++d+ + ++++++CnPPf+ + +e k+g++r ++ p+ ++G++ e ++ GGev tr|A0A1X7U5N0|A0A1X7U5N0_AMPQE 152 VIQVAPDvflKGVVDTASYDHTQFTFCMCNPPFYKDGDELKGGASRTG---HRP-----VPKTLNTGNEIETMTSGGEV 222 9988654111334444444566************************98...455.....789999************** PP HHHHHHHHHHHHHGGGEEEEEEEESSGGGHHHHHHHHHHTT-SEEEEEEEEETTEEEEEEEEES CS Methyltransf_10 234 afikklieeskqlakqvlWfttlvskkenlaplkeelkklGaskvtvvelaqGqklsrfiaWsf 297 +f++++++es ++ +++ W+t++++kk++la++k+ lk+l ++ + + ++qG++ ++ +aWs+ tr|A0A1X7U5N0|A0A1X7U5N0_AMPQE 223 EFVRNIVKESMSIGTRIKWYTSMLGKKDSLAKIKNFLKELKVPVILDTTFVQGRTHRWGVAWSY 286 ***************************************************************9 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (299 nodes) Target sequences: 43435 (14716620 residues searched) Passed MSV filter: 949 (0.0218487); expected 868.7 (0.02) Passed bias filter: 747 (0.0171981); expected 868.7 (0.02) Passed Vit filter: 37 (0.000851848); expected 43.4 (0.001) Passed Fwd filter: 1 (2.30229e-05); expected 0.4 (1e-05) Initial search space (Z): 43435 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.30u 0.01s 00:00:00.31 Elapsed: 00:00:00.11 # Mc/sec: 40002.45 // [ok]