# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/Methyltransf_10.hmm.txt # target sequence database: proteomes/Danio_rerio.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Methyltransf_10 [M=299] Accession: PF05971.11 Description: Protein of unknown function (DUF890) Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-124 415.7 0.0 2e-124 415.3 0.0 1.1 1 sp|Q6DC64|MET16_DANRE RNA N6-adenosine-methyltransferase met Domain annotation for each sequence (and alignments): >> sp|Q6DC64|MET16_DANRE RNA N6-adenosine-methyltransferase mettl16 OS=Danio rerio OX=7955 GN=mettl16 PE=2 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 415.3 0.0 7.8e-129 2e-124 1 299 [] 1 286 [. 1 286 [. 0.98 Alignments for each domain: == domain 1 score: 415.3 bits; conditional E-value: 7.8e-129 XXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXS-TTSHHHHHHHHHHHHHHHH----.---TTS----HHHHHHHHH CS Methyltransf_10 1 aalksglhprnrhkdky.dfaalikvvPelkqfvilnpkGrvsidfadPlavkalnkallrefygvsewdiPdgfliPpvPgradyih 87 +al++++hprnr+kdk+ df +l++++Pe++++v+ +++Grv+++f+dP+av+al+++ll+e++g+++ +iP ++liP+vP+r++yih sp|Q6DC64|MET16_DANRE 1 MALNKSMHPRNRYKDKPpDFVYLASKYPEFQKHVQTTLTGRVTLNFKDPEAVRALTCTLLKEDFGLTI-EIPLERLIPTVPLRLNYIH 87 6889************99**************************************************.******************* PP HHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT.T-TTTEEEEE--ST-SSTTTSTT-- CS Methyltransf_10 88 yvadllgkadsdisaqvraldiGvGanCiyPllGvteyGWrfvgsevddvslasakaivesnsklsdaiklrkqkekkaifdglieen 175 +v+dl+g + + +r++diG+Ga+CiyPllG+t +GW f+++evdd+++++ak++ve+n +l+++ik++k+++k+ ++d+l+ee+ sp|Q6DC64|MET16_DANRE 88 WVEDLIGGQGNP----QRGIDIGTGASCIYPLLGATMNGWFFLATEVDDICFNYAKKNVEQN-HLAELIKVVKVPQKTLLMDALKEES 170 ******987655....59********************************************.************************* PP S-EEEEEE-----SS------------...---.....---------TTTTHHHHTHHHHHHHHHHHHHHHGGGEEEEEEEESSGGGH CS Methyltransf_10 176 erydvtlCnPPfhaslaeakagserklknlgkanktralpslnfgGqkaelyceGGevafikklieeskqlakqvlWfttlvskkenl 263 yd+++CnPPf+a+++eak++++r+ +++ +ps+ ++G+ +e+++eGGe++f+k++i++s ql+k+++W++++++kk++l sp|Q6DC64|MET16_DANRE 171 IVYDFCMCNPPFFANQLEAKGVNSRNS---RRP-----PPSSINTGGVTEIMAEGGELEFVKRVIHDSLQLKKRLRWYSCMLGKKCSL 250 *************************99...776.....899*********************************************** PP HHHHHHHHHTT-SEEEEEEEEETTEEEEEEEEES-- CS Methyltransf_10 264 aplkeelkklGaskvtvvelaqGqklsrfiaWsfld 299 aplk+el+k+G+ kvt +e++qG+++++++aWsf+d sp|Q6DC64|MET16_DANRE 251 APLKDELRKQGVAKVTHTEFCQGRTMRWALAWSFYD 286 **********************************97 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (299 nodes) Target sequences: 25687 (13798380 residues searched) Passed MSV filter: 604 (0.0235138); expected 513.7 (0.02) Passed bias filter: 492 (0.0191537); expected 513.7 (0.02) Passed Vit filter: 36 (0.00140149); expected 25.7 (0.001) Passed Fwd filter: 1 (3.89302e-05); expected 0.3 (1e-05) Initial search space (Z): 25687 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.27u 0.01s 00:00:00.28 Elapsed: 00:00:00.10 # Mc/sec: 41257.16 // [ok]