# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/Methyltransf_10.hmm.txt # target sequence database: proteomes/Monosiga_brevicollis.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Methyltransf_10 [M=299] Accession: PF05971.11 Description: Protein of unknown function (DUF890) Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.7e-60 201.8 0.1 2.6e-31 108.1 0.2 2.9 2 tr|A9V4W7|A9V4W7_MONBE Predicted protein OS=Monosiga brevico ------ inclusion threshold ------ 0.018 13.5 0.0 0.022 13.2 0.0 1.1 1 tr|A9UWC2|A9UWC2_MONBE Predicted protein OS=Monosiga brevico Domain annotation for each sequence (and alignments): >> tr|A9V4W7|A9V4W7_MONBE Predicted protein OS=Monosiga brevicollis OX=81824 GN=27301 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 108.1 0.2 5.6e-35 2.6e-31 7 163 .. 1 172 [. 1 179 [. 0.85 2 ! 89.8 0.0 2.1e-29 9.8e-26 176 298 .. 212 324 .. 193 325 .. 0.89 Alignments for each domain: == domain 1 score: 108.1 bits; conditional E-value: 5.6e-35 XXXXXXXXXXX.XXXXXXXXXXXXXXXXX.......XXXXX.........XXXS-TTSHHHHHHHHHHHHHHHH----.---TTS-- CS Methyltransf_10 7 lhprnrhkdky.dfaalikvvPelkqfvi.......lnpkG.........rvsidfadPlavkalnkallrefygvsewdiPdgfli 76 +hprnr+ ++ +fa+l+++ +l+ +v ++ +G r idf+d a++al+ a l+ ++++ + diPdg+li tr|A9V4W7|A9V4W7_MONBE 1 MHPRNRYARRPpNFAQLADKCAKLRPYVSypddseaKEAEGharsqhrprRAFIDFRDTNAIRALTEATLECDFNLLT-DIPDGHLI 86 8*********99***************97222222234455333222222456************************9.******** PP --HHHHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH.--EEEEEES-HHHHHHHHHHHHHT.T-TTTEEEEE-- CS Methyltransf_10 77 PpvPgradyihyvadllgkadsdisaqvraldiGvGanCiyPllGvtey.GWrfvgsevddvslasakaivesnsklsdaiklrkqk 162 P+vP +++y+h+++dll + +vr++diG+G iy +lG+ ++ W+fvg+e+d+++ +a+ ++ n +l++ ++++ + tr|A9V4W7|A9V4W7_MONBE 87 PTVPQKLNYLHWLEDLLRTLVA-PPDKVRVVDIGTGPIAIYCVLGARLHpEWQFVGTELDPKACRHAQETIARN-QLTESVHIVSLP 171 ****************987654.5689*******************98747***********************.999999998877 PP S CS Methyltransf_10 163 e 163 + tr|A9V4W7|A9V4W7_MONBE 172 H 172 6 PP == domain 2 score: 89.8 bits; conditional E-value: 2.1e-29 S.-EEEEEE-----SS------------...---.....---------TTTTHHHHTHHHHHHHHHHHHHHHGGGEEEEEEEESSGG CS Methyltransf_10 176 e.rydvtlCnPPfhaslaeakagserklknlgkanktralpslnfgGqkaelyceGGevafikklieeskqlakqvlWfttlvskke 261 e ++ +++CnPPf+++ + + + ++ p++ +G +e++++GGevaf+++++ees l+++v W+t +++kk tr|A9V4W7|A9V4W7_MONBE 212 ElEFAISMCNPPFYDTHESP-----ANYTGIRP------APKVEATGSSSEMHVQGGEVAFVTRMMEESARLRTRVGWYTVMLGKKR 287 44799*********987654.....34444533......588999****************************************** PP GHHHHHHHHHHTT-SEEEEEEEEETTEEEEEEEEES- CS Methyltransf_10 262 nlaplkeelkklGaskvtvvelaqGqklsrfiaWsfl 298 +l +l+ +l+ lG ++v+ ++qG++ ++++aW+fl tr|A9V4W7|A9V4W7_MONBE 288 SLLDLRPQLTALGCTHVVESSFVQGKTHRWAVAWTFL 324 ***********************************96 PP >> tr|A9UWC2|A9UWC2_MONBE Predicted protein OS=Monosiga brevicollis OX=81824 GN=36597 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.2 0.0 4.7e-06 0.022 88 149 .. 36 93 .. 26 146 .. 0.77 Alignments for each domain: == domain 1 score: 13.2 bits; conditional E-value: 4.7e-06 HHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT CS Methyltransf_10 88 yvadllgkadsdisaqvraldiGvGanCiyPllGvteyGWrfvgsevddvslasakaivesn 149 ++a l + ++++ ++ l G+Ga+C y e G++ vg +v + +l++a++ e+ tr|A9UWC2|A9UWC2_MONBE 36 RLATLCHSMRENKAPRALELGCGTGASCCY----LAEQGYNVVGIDVVQAALDQAEKQREQL 93 56666666666676677778899*******....589******************9976664 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (299 nodes) Target sequences: 9188 (5511963 residues searched) Passed MSV filter: 219 (0.0238354); expected 183.8 (0.02) Passed bias filter: 173 (0.0188289); expected 183.8 (0.02) Passed Vit filter: 11 (0.00119721); expected 9.2 (0.001) Passed Fwd filter: 2 (0.000217675); expected 0.1 (1e-05) Initial search space (Z): 9188 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.12u 0.01s 00:00:00.13 Elapsed: 00:00:00.05 # Mc/sec: 32961.54 // [ok]