# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/Methyltransf_10.hmm.txt
# target sequence database: proteomes/Pseudomonas_aeruginosa.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Methyltransf_10 [M=299]
Accession: PF05971.11
Description: Protein of unknown function (DUF890)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.6e-155 514.6 0.0 3e-155 514.4 0.0 1.0 1 sp|Q9HXG4|RLMF_PSEAE Ribosomal RNA large subunit methyltra
------ inclusion threshold ------
0.03 12.0 0.0 0.043 11.5 0.0 1.1 1 tr|Q9I281|Q9I281_PSEAE Uncharacterized protein OS=Pseudomona
Domain annotation for each sequence (and alignments):
>> sp|Q9HXG4|RLMF_PSEAE Ribosomal RNA large subunit methyltransferase F OS=Pseudomonas aeruginosa (strain ATCC 15692 /
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 514.4 0.0 1.1e-158 3e-155 2 299 .] 14 314 .. 13 314 .. 0.99
Alignments for each domain:
== domain 1 score: 514.4 bits; conditional E-value: 1.1e-158
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS-TTSHHHHHHHHHHHHHHHH----.---TTS----HHHHHHHHHHHH CS
Methyltransf_10 2 alksglhprnrhkdkydfaalikvvPelkqfvilnpkGrvsidfadPlavkalnkallrefygvsewdiPdgfliPpvPgradyihyva 90
+++s+lhprnrh ++ydf++li+ +Pel++fvilnp+Gr+sidfadP+avka+n+all++fy+v+ewdiPdg+l+Pp+Pgrady+hy+a
sp|Q9HXG4|RLMF_PSEAE 14 KSASPLHPRNRHLGRYDFPRLIAGSPELERFVILNPYGRQSIDFADPAAVKAFNRALLQQFYDVREWDIPDGYLCPPIPGRADYLHYLA 102
6899************************************************************************************* PP
HHHT--TCG.CS-..--EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT.T-TTTEEEEE--ST-SSTTTSTT--S CS
Methyltransf_10 91 dllgkadsd.isa..qvraldiGvGanCiyPllGvteyGWrfvgsevddvslasakaivesnsklsdaiklrkqkekkaifdglieene 176
dllg+++++ i++ +rald+G+GanCiyPllG++eyGWrfvg+++d++slasa+ai+++n+++++ai+lr+q+++++if+gli+++e
sp|Q9HXG4|RLMF_PSEAE 103 DLLGASHDGlIPRgpGLRALDVGTGANCIYPLLGHHEYGWRFVGADIDPQSLASAAAILAANPRFAAAIELRRQPDRRQIFQGLIGVDE 191
*******998888999************************************************************************* PP
-EEEEEE-----SS------------...---.....---------TTTTHHHHTHHHHHHHHHHHHHHHGGGEEEEEEEESSGGGHHH CS
Methyltransf_10 177 rydvtlCnPPfhaslaeakagserklknlgkanktralpslnfgGqkaelyceGGevafikklieeskqlakqvlWfttlvskkenlap 265
r+d+tlCnPPfhasl+ea++gs+rk+knlgk+++tr+lp lnfgGq aelyceGGe+af++ ++ees+++a+qv+Wfttlvsk++nl++
sp|Q9HXG4|RLMF_PSEAE 192 RFDMTLCNPPFHASLDEATRGSRRKWKNLGKLDPTRTLPLLNFGGQGAELYCEGGEAAFLAGMAEESRAFATQVFWFTTLVSKASNLPN 280
***************************************************************************************** PP
HHHHHHHTT-SEEEEEEEEETTEEEEEEEEES-- CS
Methyltransf_10 266 lkeelkklGaskvtvvelaqGqklsrfiaWsfld 299
l+e+lk+lGas+++vv++aqGqk+srf+aW++ld
sp|Q9HXG4|RLMF_PSEAE 281 LQERLKTLGASDIRVVDMAQGQKQSRFVAWTYLD 314
********************************87 PP
>> tr|Q9I281|Q9I281_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.5 0.0 1.5e-05 0.043 99 148 .. 37 86 .. 22 97 .. 0.80
Alignments for each domain:
== domain 1 score: 11.5 bits; conditional E-value: 1.5e-05
GCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHH CS
Methyltransf_10 99 disaqvraldiGvGanCiyPllGvteyGWrfvgsevddvslasakaives 148
+++++r l +G Ga l GWrfv+++++ la a++ +
tr|Q9I281|Q9I281_PSEAE 37 RLPERARLLSVGCGAGGELAELAGLRPGWRFVAADLSADMLALARQRCAR 86
478899*********998888888899***********999999887655 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (299 nodes)
Target sequences: 5563 (1857172 residues searched)
Passed MSV filter: 123 (0.0221104); expected 111.3 (0.02)
Passed bias filter: 115 (0.0206723); expected 111.3 (0.02)
Passed Vit filter: 15 (0.00269639); expected 5.6 (0.001)
Passed Fwd filter: 2 (0.000359518); expected 0.1 (1e-05)
Initial search space (Z): 5563 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.04u 0.00s 00:00:00.04 Elapsed: 00:00:00.02
# Mc/sec: 27764.72
//
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