# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/Methyltransf_10.hmm.txt # target sequence database: proteomes/Thermococcus_kodakarensis.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Methyltransf_10 [M=299] Accession: PF05971.11 Description: Protein of unknown function (DUF890) Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.6e-09 32.6 0.0 2.5e-08 30.7 0.0 1.7 1 tr|Q5JJ79|Q5JJ79_THEKO Predicted SAM-dependent methyltransfe Domain annotation for each sequence (and alignments): >> tr|Q5JJ79|Q5JJ79_THEKO Predicted SAM-dependent methyltransferase, DUF890 family OS=Thermococcus kodakarensis (strain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.7 0.0 1.1e-11 2.5e-08 25 190 .. 19 164 .. 11 180 .. 0.80 Alignments for each domain: == domain 1 score: 30.7 bits; conditional E-value: 1.1e-11 XXXXXXXXXXXXXXXXXXS-TTSHHHHHHHHHHHHHHHH----.---TTS----HHHHHHHHHHHHHHHT--TCGCS---EEEEES- CS Methyltransf_10 25 vvPelkqfvilnpkGrvsidfadPlavkalnkallrefygvsewdiPdgfliPpvPgradyihyvadllgkadsdisaqvraldiGv 111 v Pel +++ +Gr +df + +a ++n+a+ r +g+ P+g + p+ y+ ++ +l ++l+iG+ tr|Q5JJ79|Q5JJ79_THEKO 19 VFPELGKYID--ESGR--LDFSNREARILYNRAIARAIFGLDVEYHPKGLVTTPIS---RYLF-LKTFLR-------GGEKVLEIGT 90 5566666543..3444..67888888778888888888887777778877777774...3443.333332.......245679**** PP TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT.T-TTTEEEEE--ST-SSTTTSTT--S-EEEEEE-----SS CS Methyltransf_10 112 GanCiyPllGvteyGWrfvgsevddvslasakaivesnsklsdaiklrkqkekkaifdglieenerydvtlCnPPfhas 190 G + l+ ++ +++e+d+ +++ak+++e+n +++ k + i+ g++ + er+dv PP++++ tr|Q5JJ79|Q5JJ79_THEKO 91 GHTAMMALMAERLFNCDVTATELDEEFFEYAKRNIEKN-----GANVKPIKSNGGIIRGVVPKGERFDVIFSAPPYYEA 164 **************************************.....4567788999***********************975 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (299 nodes) Target sequences: 2301 (637680 residues searched) Passed MSV filter: 65 (0.0282486); expected 46.0 (0.02) Passed bias filter: 61 (0.0265102); expected 46.0 (0.02) Passed Vit filter: 6 (0.00260756); expected 2.3 (0.001) Passed Fwd filter: 1 (0.000434594); expected 0.0 (1e-05) Initial search space (Z): 2301 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 19066.63 // [ok]