# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/Methyltransf_10.hmm.txt # target sequence database: proteomes/Xenopus_tropicalis.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Methyltransf_10 [M=299] Accession: PF05971.11 Description: Protein of unknown function (DUF890) Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.4e-130 433.5 0.0 8e-130 433.0 0.0 1.3 1 tr|B3DL09|B3DL09_XENTR U6 small nuclear RNA (adenine-(4 ------ inclusion threshold ------ 0.15 11.8 0.0 0.22 11.2 0.0 1.2 1 tr|A0A1B8Y7S2|A0A1B8Y7S2_XENTR Uncharacterized protein OS=Xenop Domain annotation for each sequence (and alignments): >> tr|B3DL09|B3DL09_XENTR U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase OS=Xenopus tropicalis OX=8364 GN=m # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 433.0 0.0 6.6e-134 8e-130 1 299 [] 1 291 [. 1 291 [. 0.99 Alignments for each domain: == domain 1 score: 433.0 bits; conditional E-value: 6.6e-134 XXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXS-TTSHHHHHHHHHHHHHHHH----.---TTS----HHHHHHHH CS Methyltransf_10 1 aalksglhprnrhkdky.dfaalikvvPelkqfvilnpkGrvsidfadPlavkalnkallrefygvsewdiPdgfliPpvPgradyi 86 +al++++hprnr+kdk+ dfa+l++++Pe+kq+v +n++Grvs++f+dP av+al+++llre++g+++ diP ++liP+vP+r++yi tr|B3DL09|B3DL09_XENTR 1 MALNKSMHPRNRYKDKPpDFAYLASKYPEFKQHVNVNLAGRVSLNFKDPCAVRALTCTLLREDFGLTI-DIPLERLIPTVPLRLNYI 86 6889************99**************************************************.****************** PP HHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT.T-TTTEEEEE--ST-SSTTTSTT CS Methyltransf_10 87 hyvadllgkadsdisaqvraldiGvGanCiyPllGvteyGWrfvgsevddvslasakaivesnsklsdaiklrkqkekkaifdglie 173 h+v+dl+ +dsd++a +r++diG+Ga+CiyPllG+t++GW+f+++evdd++ ++ak++ve+n +lsd+ik++k+++k+ ++d+l+e tr|B3DL09|B3DL09_XENTR 87 HWVEDLINYHDSDKTALRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDICYNYAKKNVEQN-NLSDLIKVVKVPQKTLLMDALKE 172 ***************************************************************.*********************** PP --S.-EEEEEE-----SS------------...---.....---------TTTTHHHHTHHHHHHHHHHHHHHHGGGEEEEEEEESS CS Methyltransf_10 174 ene.rydvtlCnPPfhaslaeakagserklknlgkanktralpslnfgGqkaelyceGGevafikklieeskqlakqvlWfttlvsk 259 e+e +yd+++CnPPf+a+++ea+++++r++ ++ +ps++++G+++e+++eGGe++f+k++i++s +l+k+++W++++++k tr|B3DL09|B3DL09_XENTR 173 ESEiIYDFCMCNPPFFANQLEAQGVNSRNP---HRP-----PPSSVNTGGITEIMAEGGELEFVKRIIHDSLKLKKRLRWYSCMLGK 251 ***99************************9...565.....899******************************************* PP GGGHHHHHHHHHHTT-SEEEEEEEEETTEEEEEEEEES-- CS Methyltransf_10 260 kenlaplkeelkklGaskvtvvelaqGqklsrfiaWsfld 299 k++laplkeel+k+G+++v +e+ qG+++++++aWsf++ tr|B3DL09|B3DL09_XENTR 252 KCSLAPLKEELRKQGVPRVAHTEFYQGRTMRWALAWSFYE 291 **************************************85 PP >> tr|A0A1B8Y7S2|A0A1B8Y7S2_XENTR Uncharacterized protein OS=Xenopus tropicalis OX=8364 GN=XENTR_v90029933mg PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.2 0.0 1.9e-05 0.22 64 129 .. 169 235 .. 147 248 .. 0.77 Alignments for each domain: == domain 1 score: 11.2 bits; conditional E-value: 1.9e-05 ----.---TTS----HHHHHHHHHHHHHHHT--TCGCS-..--EEEEES-TTTTHHHHHHHHH.H--EE CS Methyltransf_10 64 gvsewdiPdgfliPpvPgradyihyvadllgkadsdisa..qvraldiGvGanCiyPllGvte.yGWrf 129 v+ w+ g i ++ g yih+v + + s+ ++r+ di G +C++ llG++ W + tr|A0A1B8Y7S2|A0A1B8Y7S2_XENTR 169 TVKVWNAESGECIHTLGGHTAYIHHVHLH-EQRAASCSTdrTIRVWDIEAG-QCLHTLLGHEAsVMWVW 235 6999*********************9743.33333333334999****999.7*******975134655 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (299 nodes) Target sequences: 24182 (11782085 residues searched) Passed MSV filter: 543 (0.0224547); expected 483.6 (0.02) Passed bias filter: 433 (0.0179059); expected 483.6 (0.02) Passed Vit filter: 26 (0.00107518); expected 24.2 (0.001) Passed Fwd filter: 2 (8.27061e-05); expected 0.2 (1e-05) Initial search space (Z): 24182 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.25u 0.01s 00:00:00.26 Elapsed: 00:00:00.10 # Mc/sec: 35228.43 // [ok]