# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/Methyltransf_11.hmm.txt # target sequence database: proteomes/Pseudomonas_aeruginosa.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Methyltransf_11 [M=95] Accession: PF08241.11 Description: Methyltransferase domain Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4e-25 86.7 0.0 7.1e-25 85.9 0.0 1.4 1 tr|Q9I615|Q9I615_PSEAE Malonyl-[acyl-carrier protein] O-meth 4.8e-23 80.0 0.0 7.6e-23 79.4 0.0 1.3 1 sp|Q9HZ63|UBIG_PSEAE Ubiquinone biosynthesis O-methyltrans 8.5e-21 72.8 0.0 1.5e-20 72.0 0.0 1.4 1 sp|Q9HUC0|UBIE_PSEAE Ubiquinone/menaquinone biosynthesis C 2.6e-19 68.0 0.0 4.4e-19 67.3 0.0 1.4 1 tr|G3XCZ7|G3XCZ7_PSEAE Uncharacterized protein OS=Pseudomona 2.1e-18 65.1 0.0 4e-18 64.2 0.0 1.5 1 tr|Q9I5Y9|Q9I5Y9_PSEAE Probable transcriptional regulator OS 3.1e-18 64.5 0.0 5.1e-18 63.9 0.0 1.3 1 tr|Q9HTB1|Q9HTB1_PSEAE Uncharacterized protein OS=Pseudomona 1.9e-17 62.0 0.2 4e-17 61.0 0.2 1.6 1 tr|Q9I0F9|Q9I0F9_PSEAE Uncharacterized protein OS=Pseudomona 2.7e-17 61.6 0.0 4.3e-17 60.9 0.0 1.4 1 tr|Q9HXD0|Q9HXD0_PSEAE Uncharacterized protein OS=Pseudomona 4.5e-17 60.9 0.1 1.1e-16 59.6 0.1 1.7 1 tr|Q9I5X8|Q9I5X8_PSEAE Uncharacterized protein OS=Pseudomona 8.2e-17 60.0 0.0 1.3e-16 59.3 0.0 1.3 1 tr|Q9I0I8|Q9I0I8_PSEAE Uncharacterized protein OS=Pseudomona 1.6e-16 59.1 0.0 2.8e-16 58.3 0.0 1.4 1 tr|Q9I5E0|Q9I5E0_PSEAE Phospholipid methyltransferase OS=Pse 1.5e-15 56.0 0.0 2.2e-15 55.4 0.0 1.3 1 tr|Q9HV09|Q9HV09_PSEAE Uncharacterized protein OS=Pseudomona 2e-15 55.5 0.3 5.9e-15 54.0 0.0 1.9 1 tr|Q9HT28|Q9HT28_PSEAE Uncharacterized protein OS=Pseudomona 3e-14 51.8 0.0 6e-14 50.8 0.0 1.4 1 tr|Q9I6A6|Q9I6A6_PSEAE Uncharacterized protein OS=Pseudomona 4.7e-14 51.2 0.1 7.2e-14 50.6 0.1 1.3 1 tr|Q9HTB3|Q9HTB3_PSEAE Uncharacterized protein OS=Pseudomona 7.4e-14 50.5 0.0 1.3e-13 49.8 0.0 1.4 1 tr|Q9HV18|Q9HV18_PSEAE tRNA 5-carboxymethoxyuridine methyltr 3.3e-13 48.4 0.0 5.8e-13 47.7 0.0 1.4 1 tr|Q9HW23|Q9HW23_PSEAE Uncharacterized protein OS=Pseudomona 3.7e-13 48.3 0.1 7.6e-13 47.3 0.1 1.5 1 tr|Q9HY94|Q9HY94_PSEAE Uncharacterized protein OS=Pseudomona 9e-13 47.0 0.0 1.7e-12 46.2 0.0 1.5 1 tr|Q9I227|Q9I227_PSEAE Uncharacterized protein OS=Pseudomona 1e-12 46.9 0.0 2.1e-12 45.9 0.0 1.5 1 tr|Q9I4C2|Q9I4C2_PSEAE Uncharacterized protein OS=Pseudomona 1.7e-12 46.1 0.1 2.5e-12 45.6 0.1 1.2 1 tr|Q9HV06|Q9HV06_PSEAE Uncharacterized protein OS=Pseudomona 2.1e-11 42.7 0.0 4e-11 41.8 0.0 1.5 1 sp|Q9I5G3|CMOA_PSEAE Carboxy-S-adenosyl-L-methionine synth 1.1e-10 40.4 0.0 4.2e-10 38.5 0.0 1.9 1 tr|Q9I4H6|Q9I4H6_PSEAE rRNA methyltransferase OS=Pseudomonas 1.9e-10 39.6 0.0 3.7e-10 38.7 0.0 1.5 1 tr|Q9HWK3|Q9HWK3_PSEAE Uncharacterized protein OS=Pseudomona 4e-10 38.6 0.0 5.8e-10 38.0 0.0 1.3 1 tr|Q9I281|Q9I281_PSEAE Uncharacterized protein OS=Pseudomona 4.2e-10 38.5 0.0 6.7e-10 37.8 0.0 1.3 1 tr|Q9I128|Q9I128_PSEAE Uncharacterized protein OS=Pseudomona 1.9e-09 36.4 0.0 3.7e-09 35.5 0.0 1.5 1 sp|Q9I0S1|TAM_PSEAE Trans-aconitate 2-methyltransferase O 1.1e-08 33.9 0.0 3.2e-08 32.5 0.0 1.8 1 tr|Q9I4P1|Q9I4P1_PSEAE Uncharacterized protein OS=Pseudomona 1.7e-08 33.3 0.0 5.7e-08 31.7 0.0 1.9 1 sp|Q9I5G4|CMOB_PSEAE tRNA U34 carboxymethyltransferase OS= 2.2e-08 33.0 0.0 7.2e-08 31.3 0.0 1.8 1 tr|Q9HU69|Q9HU69_PSEAE Uncharacterized protein OS=Pseudomona 3.6e-07 29.1 0.0 6e-07 28.4 0.0 1.3 1 tr|Q9I2T0|Q9I2T0_PSEAE Uncharacterized protein OS=Pseudomona 6.4e-07 28.3 0.0 2e-05 23.5 0.0 2.5 1 sp|O87131|CHER1_PSEAE Chemotaxis protein methyltransferase 5.3e-06 25.4 0.0 1.3e-05 24.1 0.0 1.7 1 sp|Q9HUW3|PRMA_PSEAE Ribosomal protein L11 methyltransfera 2.3e-05 23.3 0.0 4.7e-05 22.3 0.0 1.5 1 tr|Q9I1T6|Q9I1T6_PSEAE Uncharacterized protein OS=Pseudomona 2.6e-05 23.1 0.0 9.2e-05 21.4 0.0 1.9 1 sp|Q9HVC8|PRMC_PSEAE Release factor glutamine methyltransf 3.3e-05 22.8 0.0 0.00011 21.1 0.0 1.9 1 sp|Q9X6R0|SPEE1_PSEAE Polyamine aminopropyltransferase 1 OS 4e-05 22.5 0.1 5.9e-05 22.0 0.1 1.5 1 tr|Q9I279|Q9I279_PSEAE Uncharacterized protein OS=Pseudomona 6.8e-05 21.8 0.0 0.003 16.5 0.0 3.1 2 tr|Q9HWG4|Q9HWG4_PSEAE Pyochelin synthetase OS=Pseudomonas a 0.00011 21.2 0.1 0.0017 17.3 0.1 2.3 1 tr|G3XCT5|G3XCT5_PSEAE Methyltransferase PilK OS=Pseudomonas 0.00012 21.0 0.0 0.00056 18.9 0.0 2.1 1 sp|Q9HXT5|WSPC_PSEAE Probable biofilm formation methyltran 0.00015 20.7 0.0 0.0012 17.8 0.0 2.2 1 tr|Q9HWV3|Q9HWV3_PSEAE Uncharacterized protein OS=Pseudomona 0.00015 20.7 0.0 0.00045 19.2 0.0 1.8 1 sp|Q9I525|RLMD_PSEAE 23S rRNA (uracil(1939)-C(5))-methyltr 0.00028 19.8 0.6 0.0026 16.7 0.1 2.5 2 tr|Q9I6D9|Q9I6D9_PSEAE Uncharacterized protein OS=Pseudomona 0.00029 19.8 0.0 0.0032 16.5 0.0 2.5 2 sp|Q9HV78|TRMA_PSEAE tRNA/tmRNA (uracil-C(5))-methyltransf 0.00031 19.7 0.0 0.0039 16.2 0.0 2.1 2 sp|Q9I347|PRMB_PSEAE 50S ribosomal protein L3 glutamine me 0.002 17.1 0.0 0.0087 15.0 0.0 2.2 1 sp|Q9HZG0|RLMKL_PSEAE Ribosomal RNA large subunit methyltra 0.0021 17.0 0.0 0.0034 16.3 0.0 1.4 1 tr|Q9I3U2|Q9I3U2_PSEAE Uncharacterized protein OS=Pseudomona 0.0022 17.0 0.0 0.0048 15.9 0.0 1.6 1 tr|Q9HYR0|Q9HYR0_PSEAE Uncharacterized protein OS=Pseudomona 0.0045 15.9 0.0 0.087 11.8 0.0 2.4 2 sp|Q9HVG4|RSMC_PSEAE Ribosomal RNA small subunit methyltra 0.0046 15.9 0.0 0.041 12.9 0.0 2.4 2 sp|Q9I6V7|CHER2_PSEAE Chemotaxis protein methyltransferase 0.0056 15.6 0.1 0.0098 14.9 0.1 1.4 1 tr|Q9HUX4|Q9HUX4_PSEAE Uncharacterized protein OS=Pseudomona 0.0058 15.6 0.0 0.017 14.1 0.0 1.8 1 sp|P45683|PIMT_PSEAE Protein-L-isoaspartate O-methyltransf 0.006 15.6 0.0 0.049 12.6 0.0 2.4 2 tr|G3XCV2|G3XCV2_PSEAE Dihydroaeruginoic acid synthetase OS= ------ inclusion threshold ------ 0.022 13.8 0.0 0.038 13.0 0.0 1.4 1 sp|Q9HT10|RSMG_PSEAE Ribosomal RNA small subunit methyltra 0.028 13.4 0.1 0.25 10.4 0.0 2.2 2 sp|Q9I7A9|RSMB_PSEAE Ribosomal RNA small subunit methyltra 0.044 12.8 0.0 0.088 11.8 0.0 1.6 1 sp|Q9HVH4|RLMG_PSEAE Ribosomal RNA large subunit methyltra Domain annotation for each sequence (and alignments): >> tr|Q9I615|Q9I615_PSEAE Malonyl-[acyl-carrier protein] O-methyltransferase OS=Pseudomonas aeruginosa (strain ATCC 156 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 85.9 0.0 7.1e-27 7.1e-25 1 95 [] 62 155 .. 62 155 .. 0.97 Alignments for each domain: == domain 1 score: 85.9 bits; conditional E-value: 7.1e-27 EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHH CS Methyltransf_11 1 LdvGcGtGrlaealakrg..arvvgvDlspemlklakekaseeglvefvvadaeklpfpdnsfDlvvssevlhhvedpekalkeiaR 85 +d+GcGtG++++al++r+ a+ ++vD+++ ml+ a++++ ++ f+ +dae+lp++d+s+Dl +ss ++++++d+ ++l+e++R tr|Q9I615|Q9I615_PSEAE 62 VDLGCGTGYFSRALERRFgaAEGLAVDIAEGMLRHARARGGASH---FIGGDAERLPLRDGSCDLLFSSLAIQWCADLPAVLAEARR 145 59*************7777***********************98...7*************************************** PP HEEEEEEEEE CS Methyltransf_11 86 vLkpgGllvi 95 vL+pgG+l++ tr|Q9I615|Q9I615_PSEAE 146 VLRPGGVLAF 155 *******986 PP >> sp|Q9HZ63|UBIG_PSEAE Ubiquinone biosynthesis O-methyltransferase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 79.4 0.0 7.6e-25 7.6e-23 1 94 [. 52 147 .. 52 148 .. 0.95 Alignments for each domain: == domain 1 score: 79.4 bits; conditional E-value: 7.6e-25 EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-.EEETTEECCCT.SS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHE CS Methyltransf_11 1 LdvGcGtGrlaealakrgarvvgvDlspemlklakekaseegl.vefvvadaekl.pfpdnsfDlvvssevlhhvedpekalkeiaRvL 87 Ld+GcG+G+l+ea+a+rga+v+g+D+ ++ l++a+ ++ e+g+ v++++ +ae++ ++fD+v++ e+l+hv+dp+++++ ++R++ sp|Q9HZ63|UBIG_PSEAE 52 LDIGCGGGILSEAMAQRGASVTGIDMGEAPLAVARLHQLESGVaVDYRQITAEQMaEEMPGQFDVVTCLEMLEHVPDPASVIRACHRLV 140 8*****************************************************9555558**************************** PP EEEEEEE CS Methyltransf_11 88 kpgGllv 94 kpgG ++ sp|Q9HZ63|UBIG_PSEAE 141 KPGGQVF 147 ****987 PP >> sp|Q9HUC0|UBIE_PSEAE Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Pseudomonas aeruginosa (strain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 72.0 0.0 1.5e-22 1.5e-20 1 95 [] 73 173 .. 73 173 .. 0.97 Alignments for each domain: == domain 1 score: 72.0 bits; conditional E-value: 1.5e-22 EEET-TTSHHHHHHHHTT...SEEEEEES-HHHHHHHHHHCCHHT-...EEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHH CS Methyltransf_11 1 LdvGcGtGrlaealakrg...arvvgvDlspemlklakekaseegl...vefvvadaeklpfpdnsfDlvvssevlhhvedpekalkei 83 Ld++ GtG l++++ + + ++vv D+++ mlk+ ++k ++g+ v+fv+adaeklpfpdn fD+v++ + l +v ++a++ + sp|Q9HUC0|UBIE_PSEAE 73 LDIAGGTGDLTRQFSRLVgptGEVVLADINASMLKVGRDKLLDKGVsgnVSFVQADAEKLPFPDNHFDCVTIAFGLRNVTHKDEAIRSM 161 89*************888899************************9******************************************* PP HHHEEEEEEEEE CS Methyltransf_11 84 aRvLkpgGllvi 95 RvLkpgG+l++ sp|Q9HUC0|UBIE_PSEAE 162 LRVLKPGGRLLV 173 *********975 PP >> tr|G3XCZ7|G3XCZ7_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 67.3 0.0 4.4e-21 4.4e-19 22 95 .] 2 77 .. 1 77 [. 0.97 Alignments for each domain: == domain 1 score: 67.3 bits; conditional E-value: 4.4e-21 EEEES-HHHHHHHHHHCCHHT-..EEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEEEEEE CS Methyltransf_11 22 vgvDlspemlklakekaseegl..vefvvadaeklpfpdnsfDlvvssevlhhvedpekalkeiaRvLkpgGllvi 95 v+ Dls+eml+++ + a e+g+ ++ ++ ae+lpf+d+ fD+v+s+ + hh+ d+ al+e++RvLkpgG+ ++ tr|G3XCZ7|G3XCZ7_PSEAE 2 VAYDLSAEMLAVVAQSAAERGManIRTEQGKAESLPFADGEFDFVFSRYSTHHWRDVGLALREVRRVLKPGGVAIF 77 789****************99999999*********************************************9986 PP >> tr|Q9I5Y9|Q9I5Y9_PSEAE Probable transcriptional regulator OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 64.2 0.0 4e-20 4e-18 1 94 [. 170 263 .. 170 264 .. 0.91 Alignments for each domain: == domain 1 score: 64.2 bits; conditional E-value: 4e-20 EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-..EEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHH CS Methyltransf_11 1 LdvGcGtGrlaealakrgarvvgvDlspemlklakekaseegl..vefvvadaeklpfpdnsfDlvvssevlhhvedpekalkeiaR 85 L+vG G G ++ +la+r+++v+++D s++ml+la+++ +eegl v + + a l+ + + D+vv+++vlhh++ p++alk++aR tr|Q9I5Y9|Q9I5Y9_PSEAE 170 LEVGPGDGGFLPELARRFRQVTALDNSAAMLELARQRCKEEGLgnV--RLELADALQDAAEPADCVVLNMVLHHFAAPAEALKQLAR 254 89****************************************9666..55555555678889************************* PP HEEEEEEEE CS Methyltransf_11 86 vLkpgGllv 94 ++ pgG l+ tr|Q9I5Y9|Q9I5Y9_PSEAE 255 LVHPGGSLL 263 ******997 PP >> tr|Q9HTB1|Q9HTB1_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 63.9 0.0 5.1e-20 5.1e-18 1 93 [. 64 158 .. 64 160 .. 0.97 Alignments for each domain: == domain 1 score: 63.9 bits; conditional E-value: 5.1e-20 EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-..EEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHH CS Methyltransf_11 1 LdvGcGtGrlaealakrgarvvgvDlspemlklakekaseegl..vefvvadaeklpfpdnsfDlvvssevlhhvedpekalkeiaR 85 LdvGcG G ++ +a rgar++ D+++e +++ +e+ + + +e++v+d+ lp++d++ vvs+ev++hv+dp+++l+e++R tr|Q9HTB1|Q9HTB1_PSEAE 64 LDVGCGDGGNVHFCAMRGARIIIADIDAEKIARTRERLADTPAreLECLVSDCDPLPLADATATRVVSTEVIEHVDDPRQFLAELVR 150 8*********************************99999999999****************************************** PP HEEEEEEE CS Methyltransf_11 86 vLkpgGll 93 v +pg l tr|Q9HTB1|Q9HTB1_PSEAE 151 VGQPGALY 158 ****9876 PP >> tr|Q9I0F9|Q9I0F9_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 61.0 0.2 4e-19 4e-17 1 94 [. 42 130 .. 42 131 .. 0.93 Alignments for each domain: == domain 1 score: 61.0 bits; conditional E-value: 4e-19 EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-EEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHE CS Methyltransf_11 1 LdvGcGtGrlaealakrgarvvgvDlspemlklakekaseeglvefvvadaeklpfpdnsfDlvvssevlhhvedpekalkeiaRvL 87 Ld+GcGtG+l+ la+r++rvvg+D s+++++ a+++ + ve++va ae+ ++ +s Dlv++ ++ h++ d+ ++ +e++Rv tr|Q9I0F9|Q9I0F9_PSEAE 42 LDCGCGTGQLTVLLAERFERVVGTDASAAQIDKAQARER----VEYRVALAEDSGLAAASADLVTVAQAAHWL-DLPRFYEEVRRVA 123 8******************************88866655....567***************************.7************ PP EEEEEEE CS Methyltransf_11 88 kpgGllv 94 + + +l+ tr|Q9I0F9|Q9I0F9_PSEAE 124 RADAILA 130 *998886 PP >> tr|Q9HXD0|Q9HXD0_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 60.9 0.0 4.3e-19 4.3e-17 2 94 .. 41 128 .. 40 129 .. 0.94 Alignments for each domain: == domain 1 score: 60.9 bits; conditional E-value: 4.3e-19 EET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-EEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEE CS Methyltransf_11 2 dvGcGtGrlaealakrgarvvgvDlspemlklakekaseeglvefvvadaeklpfpdnsfDlvvssevlhhvedpekalkeiaRvLk 88 d++ GtG+ a la+++++v++ D+s++++ +++++ +g +++ v+dae +++pd+ fDlv++ +++h++ d++++ +e+ RvL+ tr|Q9HXD0|Q9HXD0_PSEAE 41 DCATGTGQAALGLAQYFGEVLASDTSTQQI---EHAVVHPG-IRYSVQDAEATDYPDAAFDLVCVAQAWHWF-DHSRFNRELLRVLR 122 8899**********999*************...66688888.99****************************.7************* PP EEEEEE CS Methyltransf_11 89 pgGllv 94 pgG+++ tr|Q9HXD0|Q9HXD0_PSEAE 123 PGGVFA 128 ***996 PP >> tr|Q9I5X8|Q9I5X8_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 59.6 0.1 1.1e-18 1.1e-16 1 93 [. 47 135 .. 47 137 .. 0.93 Alignments for each domain: == domain 1 score: 59.6 bits; conditional E-value: 1.1e-18 EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-EEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHE CS Methyltransf_11 1 LdvGcGtGrlaealakrgarvvgvDlspemlklakekaseeglvefvvadaeklpfpdnsfDlvvssevlhhvedpekalkeiaRvL 87 +d+G+GtG++++ la++garvv+v++ ++m+++ e+ ++ + + ++a+++p++++ D+ v+ +++h+++ +al+e++RvL tr|Q9I5X8|Q9I5X8_PSEAE 47 VDLGAGTGKFTRLLARTGARVVAVEPVDAMRAQLAEALPQVQ---ALAGSAQSIPLANGFADALVCAQAFHWFA-TVEALEEMRRVL 129 59*****************************88888887765...69**************************6.899********* PP EEEEEE CS Methyltransf_11 88 kpgGll 93 +G+l tr|Q9I5X8|Q9I5X8_PSEAE 130 TAEGRL 135 ****87 PP >> tr|Q9I0I8|Q9I0I8_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 59.3 0.0 1.3e-18 1.3e-16 2 94 .. 68 162 .. 67 163 .. 0.95 Alignments for each domain: == domain 1 score: 59.3 bits; conditional E-value: 1.3e-18 EET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-.EEETTEECCCT.SS-TT-EEEEEEES-CCC-CCHHHHHHHHHHH CS Methyltransf_11 2 dvGcGtGrlaealakrgarvvgvDlspemlklakekaseegl.vefvvadaekl.pfpdnsfDlvvssevlhhvedpekalkeiaRv 86 +++ +G+ a la garv+ +D s+ +l+ ++ a +++l + +v++d+++l f+d+sfDlv+ + +v+d+ +++e+aRv tr|Q9I0I8|Q9I0I8_PSEAE 68 CLASAGGQQAPILAAAGARVTLFDASAGQLDKDRQVAARDRLeLACVQGDMRDLsTFADASFDLVFNPISNLYVDDVLPVWRECARV 154 567889****************************99999999999*********88******************************* PP EEEEEEEE CS Methyltransf_11 87 LkpgGllv 94 L+pgG+l+ tr|Q9I0I8|Q9I0I8_PSEAE 155 LRPGGKLL 162 *****986 PP >> tr|Q9I5E0|Q9I5E0_PSEAE Phospholipid methyltransferase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 58.3 0.0 2.8e-18 2.8e-16 1 95 [] 51 147 .. 51 147 .. 0.96 Alignments for each domain: == domain 1 score: 58.3 bits; conditional E-value: 2.8e-18 EEET-TTSHHHHHHHHTT.SEEEEEES-HHHHHHHHHHCCHHT-.EEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHH CS Methyltransf_11 1 LdvGcGtGrlaealakrg.arvvgvDlspemlklakekaseegl.vefvvadaeklpfpdnsfDlvvssevlhhvedpekalkeiaR 85 L++G GtG+++ + + +vgvD++++m +la+e+a + g+ ve+v ++ ++ + +sfD +v++++l+ ++ p al e++R tr|Q9I5E0|Q9I5E0_PSEAE 51 LEIGLGTGLNLGFYDAAKvSAIVGVDPAAQMQALARERAAQIGIpVEMVALELGEIRAEAESFDTIVCTFTLCSIAAPLPALGEMRR 137 89************95556************************9******************************************* PP HEEEEEEEEE CS Methyltransf_11 86 vLkpgGllvi 95 vLk gG l++ tr|Q9I5E0|Q9I5E0_PSEAE 138 VLKRGGELLF 147 ******9986 PP >> tr|Q9HV09|Q9HV09_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 55.4 0.0 2.2e-17 2.2e-15 2 95 .] 63 160 .. 62 160 .. 0.94 Alignments for each domain: == domain 1 score: 55.4 bits; conditional E-value: 2.2e-17 EET-TTSHHHHHHHHTT.SEEEEEES-HHHHHHHHHHCCHHT-.EEETTEECCCTSS-T.T-EEEEEEES.-CCC-CCHHHHHHHHH CS Methyltransf_11 2 dvGcGtGrlaealakrg.arvvgvDlspemlklakekaseegl.vefvvadaeklpfpd.nsfDlvvsse.vlhhvedpekalkeia 84 +vGc +Gr + l g ar vg+D s+++l++a++ a+++++ +fv+a+a +lp + ++fDl +++ vl++++d +++++ + tr|Q9HV09|Q9HV09_PSEAE 63 QVGCNNGREVLSLYAFGvARAVGIDQSAAFLAQARQLAERSPHqPRFVEANAYELPAELnGQFDLLLITIgVLNWMPDIARFFASVS 149 79***************************************99************988736****9988669*************** PP HHEEEEEEEEE CS Methyltransf_11 85 RvLkpgGllvi 95 +LkpgG l+i tr|Q9HV09|Q9HV09_PSEAE 150 GLLKPGGQLAI 160 *******9986 PP >> tr|Q9HT28|Q9HT28_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 54.0 0.0 6e-17 5.9e-15 1 94 [. 164 262 .. 164 263 .. 0.96 Alignments for each domain: == domain 1 score: 54.0 bits; conditional E-value: 6e-17 EEET-TTSHHHHHHHHTT.SEEEEEES-HHHHHHHHHHCCHHT-...EEETTEECCCTSS-TT-EEEEEEES-CCC-..CCHHHHHH CS Methyltransf_11 1 LdvGcGtGrlaealakrg.arvvgvDlspemlklakekaseegl...vefvvadaeklpfpdnsfDlvvssevlhhv..edpekalk 81 LdvGcG G la+ a+ + +v+g+ ls+e+l+l +e+++ egl v++ d ++lp +d+ fD vvs +++hv +++ +++ tr|Q9HT28|Q9HT28_PSEAE 164 LDVGCGWGGLARLAAREFgVEVTGITLSKEQLALGRERVKAEGLedrVTLKLLDYRDLP-RDGRFDKVVSVGMFEHVghANLGLYFQ 249 8**************6666****************************99*********9.9*****************99******* PP HHHHHEEEEEEEE CS Methyltransf_11 82 eiaRvLkpgGllv 94 +++ ++pgGl++ tr|Q9HT28|Q9HT28_PSEAE 250 QLYEAVRPGGLVM 262 **********975 PP >> tr|Q9I6A6|Q9I6A6_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 50.8 0.0 6e-16 6e-14 1 88 [. 19 104 .. 19 105 .. 0.92 Alignments for each domain: == domain 1 score: 50.8 bits; conditional E-value: 6e-16 EEET-TTSHHHHHHHHTT.SEEEEEES-HHHHHHHHHHCCHHT-EEETTEECCC.T.SS-TT-EEEEEEES-CCC-CCHHHHHHHHH CS Methyltransf_11 1 LdvGcGtGrlaealakrg.arvvgvDlspemlklakekaseeglvefvvadaek.l.pfpdnsfDlvvssevlhhvedpekalkeia 84 Ld+GcG G l+++l ++ + +g++++p ++++ e++++ +++d+ k l +f+++sfD+vv++++l+ v+ p+k+l+e+ tr|Q9I6A6|Q9I6A6_PSEAE 19 LDLGCGDGELLAWLRDHKqVSGYGLEIDPDNIARCIENGVNV-----IEQDLDKgLgNFASDSFDVVVMTQALQAVHYPDKILEEML 100 8**************8888999**********9998888764.....999*9998888***************************** PP HHEE CS Methyltransf_11 85 RvLk 88 Rv k tr|Q9I6A6|Q9I6A6_PSEAE 101 RVGK 104 *966 PP >> tr|Q9HTB3|Q9HTB3_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 50.6 0.1 7.3e-16 7.2e-14 1 92 [. 56 149 .. 56 152 .. 0.89 Alignments for each domain: == domain 1 score: 50.6 bits; conditional E-value: 7.3e-16 EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-..EEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHH CS Methyltransf_11 1 LdvGcGtGrlaealakrgarvvgvDlspemlklakekaseegl..vefvvadaeklpfpdnsfDlvvssevlhhvedpekalkeiaR 85 Ld+GcG G + a++ga+v+ +D + ++ ++++ ++ +v+d lp++d+ D v+ evl+hv++p+++++e++R tr|Q9HTB3|Q9HTB3_PSEAE 56 LDLGCGEGVATLFAARQGASVIFTDSEEDKVRSLAQQVEAVARrpFTGLVSDSDPLPLRDACADKLVCMEVLEHVANPARVMAELVR 142 8************************999999766555555544668889************************************** PP HEEEEEE CS Methyltransf_11 86 vLkpgGl 92 + +pg tr|Q9HTB3|Q9HTB3_PSEAE 143 LGRPGAQ 149 ****976 PP >> tr|Q9HV18|Q9HV18_PSEAE tRNA 5-carboxymethoxyuridine methyltransferase OS=Pseudomonas aeruginosa (strain ATCC 15692 / # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 49.8 0.0 1.3e-15 1.3e-13 1 94 [. 46 141 .. 46 142 .. 0.96 Alignments for each domain: == domain 1 score: 49.8 bits; conditional E-value: 1.3e-15 EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-.EEETTEECCCT.SS-TT-EEEEEEES-CCC-CCHHHHHHHHHH CS Methyltransf_11 1 LdvGcGtGrlaealakrgarvvgvDlspemlklakekaseegl.vefvvadaekl.pfpdnsfDlvvssevlhhvedpekalkeiaR 85 Ld+G+G G ++ +la rg+rv+ ++++ ml+ a+++ e+g ef++a ++l + +Dlv++++vl+++++p+++l +++ tr|Q9HV18|Q9HV18_PSEAE 46 LDIGAGLGHMSLWLAARGHRVTLAEPAQPMLDGARQRFAEAGQaAEFIQAPWQELlGQLTEPYDLVLCHAVLEWLAEPHAILPVLHQ 132 8*****************************************************7688888************************** PP HEEEEEEEE CS Methyltransf_11 86 vLkpgGllv 94 ++ pgG+l tr|Q9HV18|Q9HV18_PSEAE 133 LCAPGGWLS 141 ******986 PP >> tr|Q9HW23|Q9HW23_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 47.7 0.0 5.9e-15 5.8e-13 1 89 [. 57 151 .. 57 157 .. 0.89 Alignments for each domain: == domain 1 score: 47.7 bits; conditional E-value: 5.9e-15 EEET-TTSHHHHHHHHTT.SEEEEEES-HHHHHHHHHHCCHHT-...EEETTEECCCTSS-TT-EEEEEEES-CCC-...CCHHHHH CS Methyltransf_11 1 LdvGcGtGrlaealakrg.arvvgvDlspemlklakekaseegl...vefvvadaeklpfpdnsfDlvvssevlhhv...edpekal 80 Ld+ cG+Gr+ la++ + ++g D s+ ml++a +++++g+ v+ ++ +a +++pd+s+D +++ lhh+ +d++ +l tr|Q9HW23|Q9HW23_PSEAE 57 LDLPCGAGRFWPLLAEKDnRVIIGADNSADMLAVA-CAGQPDGVvkrVRPLQTSAFAIDLPDSSVDNIFCMRLLHHIgeaDDRRVLL 142 8999***********6666999**********888.55555555688999*****************************99****** PP HHHHHHEEE CS Methyltransf_11 81 keiaRvLkp 89 +e++Rv + tr|Q9HW23|Q9HW23_PSEAE 143 REFHRVTRD 151 ******986 PP >> tr|Q9HY94|Q9HY94_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 47.3 0.1 7.7e-15 7.6e-13 1 93 [. 181 276 .. 181 278 .. 0.94 Alignments for each domain: == domain 1 score: 47.3 bits; conditional E-value: 7.7e-15 EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-...EEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHH CS Methyltransf_11 1 LdvGcGtGrlaealakrg..arvvgvDlspemlklakekaseegl...vefvvadaeklpfpdnsfDlvvssevlhhvedpekalke 82 Ld+GcG+G+ a +ak + a+v+g+D+ + +++a+++a+ +g+ v+f v+d ++ ++fD+v+ + v+h dp++ +k tr|Q9HY94|Q9HY94_PSEAE 181 LDFGCGSGLAAIMMAKAFpeAQVYGCDFHAPSIERARANAEAAGVgdrVRFEVSDSDA--LAGKKFDFVTTFVVIHDATDPQQMMKD 265 8**************999***************************9999999999997..89999********************** PP HHHHEEEEEEE CS Methyltransf_11 83 iaRvLkpgGll 93 ++ +G+ tr|Q9HY94|Q9HY94_PSEAE 266 LRESTADDGTY 276 99988888875 PP >> tr|Q9I227|Q9I227_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 46.2 0.0 1.7e-14 1.7e-12 1 95 [] 41 140 .. 41 140 .. 0.95 Alignments for each domain: == domain 1 score: 46.2 bits; conditional E-value: 1.7e-14 EEET-TTSHHHHHHHHTT...SEEEEEES-HHHHHHHHHHCCHHT-.EEETTEECCCTSS-TT-EEEEEEES-CCC-.CCHHHHHHH CS Methyltransf_11 1 LdvGcGtGrlaealakrg...arvvgvDlspemlklakekaseegl.vefvvadaeklpfpdnsfDlvvssevlhhv.edpekalke 82 Ld+GcG G+l+ a+r r+ g++ sp l++a+++ +++g+ +++++d+ +lp + f l+ +++vlh++ +d e++++ tr|Q9I227|Q9I227_PSEAE 41 LDLGCGIGSLLLGGARRWpglQRLWGIERSPLRLEQARAQLRGAGVeARLLEGDLLDLPPLAERFELISMTAVLHWLyPDEERLFRW 127 8**************88889*************************99999********76677************************ PP HHHHEEEEEEEEE CS Methyltransf_11 83 iaRvLkpgGllvi 95 +aR L+ G++++ tr|Q9I227|Q9I227_PSEAE 128 VARHLEAQGVFLF 140 *********9986 PP >> tr|Q9I4C2|Q9I4C2_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 45.9 0.0 2.1e-14 2.1e-12 1 94 [. 39 127 .. 39 128 .. 0.93 Alignments for each domain: == domain 1 score: 45.9 bits; conditional E-value: 2.1e-14 EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-EEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHE CS Methyltransf_11 1 LdvGcGtGrlaealakrgarvvgvDlspemlklakekaseeglvefvvadaeklpfpdnsfDlvvssevlhhvedpekalkeiaRvL 87 Ld+GcG+G + l+ ++ v g Dl +++++ a+e+++e ++f v+ ae++ p fDlv+s ++ ++ d++++l +a +L tr|Q9I4C2|Q9I4C2_PSEAE 39 LDIGCGNGVSTVRLQPWFRYVEGSDLGEALIAKARENYPE---IRFSVSPAETF-APQRRFDLVTSATSFYWM-DRKQVLTRMADWL 120 8**************999*************999999988...5689*****85.46679**********999.7************ PP EEEEEEE CS Methyltransf_11 88 kpgGllv 94 pgGl++ tr|Q9I4C2|Q9I4C2_PSEAE 121 TPGGLFC 127 ****986 PP >> tr|Q9HV06|Q9HV06_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 45.6 0.1 2.5e-14 2.5e-12 2 95 .] 46 144 .. 45 144 .. 0.96 Alignments for each domain: == domain 1 score: 45.6 bits; conditional E-value: 2.5e-14 EET-TTSHHHHHHHHTT.SEEEEEES-HHHHHHHHHHCCHHT-.EEETTEECCCTSS-TT-EEEEEEES-CCC-...CCHHHHHHHH CS Methyltransf_11 2 dvGcGtGrlaealakrg.arvvgvDlspemlklakekaseegl.vefvvadaeklpfpdnsfDlvvssevlhhv...edpekalkei 83 dvG G+ l+ l g ++++ +Dls+++l++a+++ +g+ v+++ +d++ +++p++++D+ ++v+h++ e ++++++++ tr|Q9HV06|Q9HV06_PSEAE 46 DVGGGASTLVDGLLAEGfGDLTVLDLSDAALRVARNRLGARGEeVRWIAGDITGVDLPEATYDVWHDRAVFHFLttaEARRAYVRQV 132 99***9999999998889********************************************************99999******** PP HHHEEEEEEEEE CS Methyltransf_11 84 aRvLkpgGllvi 95 ++ ++ gG++++ tr|Q9HV06|Q9HV06_PSEAE 133 MKAVRHGGHVIV 144 *********986 PP >> sp|Q9I5G3|CMOA_PSEAE Carboxy-S-adenosyl-L-methionine synthase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 226 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 41.8 0.0 4e-13 4e-11 2 95 .] 62 166 .. 61 166 .. 0.92 Alignments for each domain: == domain 1 score: 41.8 bits; conditional E-value: 4e-13 EET-TTSHHHHHHHHTT....SEEEEEES-HHHHHHHHHHCCHHT-.......EEETTEECCCTSS-TT-EEEEEEES-CCC-..CCHH CS Methyltransf_11 2 dvGcGtGrlaealakrg....arvvgvDlspemlklakekaseegl.......vefvvadaeklpfpdnsfDlvvssevlhhv..edpe 77 d+Gc G++++ l +++ +rv+gvD s++m+++++e + ++ ve+++ad+ l+++ lv ++++l++v +++ sp|Q9I5G3|CMOA_PSEAE 62 DLGCSLGAVTQSLRRHVrndgCRVIGVDNSHAMIERCSEYLHAQDAmyqellpVELIEADILALDLQP--TSLVAMNFTLQFVapDQRL 148 9*************6666667****************999999988999999*99********99999..559**********999999 PP HHHHHHHHHEEEEEEEEE CS Methyltransf_11 78 kalkeiaRvLkpgGllvi 95 +l+ i++ L pgG l++ sp|Q9I5G3|CMOA_PSEAE 149 GLLRRIRQALLPGGALIL 166 ***************985 PP >> tr|Q9I4H6|Q9I4H6_PSEAE rRNA methyltransferase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 38.5 0.0 4.2e-12 4.2e-10 1 91 [. 86 168 .. 86 171 .. 0.84 Alignments for each domain: == domain 1 score: 38.5 bits; conditional E-value: 4.2e-12 EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHH CS Methyltransf_11 1 LdvGcGtGrlaealakrg..arvvgvDlspemlklakekaseeglvefvvadaeklpfpdnsfDlvvssevlhhvedpekalkeiaR 85 Ld+GcG G++++ l + a+ +++D+s e++k+a ++a++ ++++va++ +lp++d+s+ l+ s ++ + +e++R tr|Q9I4H6|Q9I4H6_PSEAE 86 LDIGCGEGYYSARLGEALagAEGYALDISREAVKRACRRAPQ---LSWLVASMARLPLADASCELIASVFSPIDW-------NEAVR 162 8**************66567*************888666666...569******************988765555.......47777 PP HEEEEE CS Methyltransf_11 86 vLkpgG 91 +L pgG tr|Q9I4H6|Q9I4H6_PSEAE 163 ILSPGG 168 777777 PP >> tr|Q9HWK3|Q9HWK3_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 38.7 0.0 3.7e-12 3.7e-10 1 95 [] 45 139 .. 45 139 .. 0.92 Alignments for each domain: == domain 1 score: 38.7 bits; conditional E-value: 3.7e-12 EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-EEETTEECCCTSS-TT-EEEEEEES-CCC-....CCHHHHHHHH CS Methyltransf_11 1 LdvGcGtGrlaealakrgarvvgvDlspemlklakekaseeglvefvvadaeklpfpdnsfDlvvssevlhhv....edpekalkei 83 Ld++cGtG +++++ + g+r g+D+++ ml+la+++ +e++ f ++d+ +++ d+ Dl++++ h e+++++l+ + tr|Q9HWK3|Q9HWK3_PSEAE 45 LDLACGTGPHVRHFLDFGYRSAGLDINQPMLDLARQRCPEAH---FSRQDMAGFQV-DEPLDLITCFLYSIHYnaglERLRACLASV 127 8***************************************98...69999998776.66********96666658889********* PP HHHEEEEEEEEE CS Methyltransf_11 84 aRvLkpgGllvi 95 + L gG++++ tr|Q9HWK3|Q9HWK3_PSEAE 128 HGALADGGVFCF 139 *********986 PP >> tr|Q9I281|Q9I281_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 38.0 0.0 5.9e-12 5.8e-10 1 89 [. 45 140 .. 45 146 .. 0.89 Alignments for each domain: == domain 1 score: 38.0 bits; conditional E-value: 5.9e-12 EEET-TTSHHHHHHH..HTTSEEEEEES-HHHHHHHHHHCCHHT-...EEETTEECCCTSS-TT-EEEEEEES-CCC-...CCHHHH CS Methyltransf_11 1 LdvGcGtGrlaeala..krgarvvgvDlspemlklakekaseegl...vefvvadaeklpfpdnsfDlvvssevlhhv...edpeka 79 L vGcG+G +++la + g r+v+ Dls+ ml+la+++ + gl +e++++d+ lp + +D+ ++ vlh++ + +++ tr|Q9I281|Q9I281_PSEAE 45 LSVGCGAGGELAELAglRPGWRFVAADLSADMLALARQRCARLGLlerIELHCGDVAGLPPAP-PCDAALVLLVLHFLrgdQAKRRF 130 78*************87777****************************9**********7443.6*************997788888 PP HHHHHHHEEE CS Methyltransf_11 80 lkeiaRvLkp 89 l+ +a L p tr|Q9I281|Q9I281_PSEAE 131 LEAVAERLAP 140 8887776666 PP >> tr|Q9I128|Q9I128_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 37.8 0.0 6.7e-12 6.7e-10 1 95 [] 55 155 .. 55 155 .. 0.91 Alignments for each domain: == domain 1 score: 37.8 bits; conditional E-value: 6.7e-12 EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-.EEETTEECCC.TSS-T...T-EEEEEEES.-CCC-CCHHHHHH CS Methyltransf_11 1 LdvGcGtGrlaealakrgarvvgvDlspemlklakekaseegl.vefvvadaek.lpfpd...nsfDlvvsse.vlhhvedpekalk 81 L++ c +G+ + la+ garv+gvD+ + ++++a++ ++++g+ +f++ d+ + lp++ + f v++s +l ++ d+++ + tr|Q9I128|Q9I128_PSEAE 55 LHLQCNAGQDSLSLARLGARVTGVDIGDSAIDFARQLSRDSGIaADFQRDDILRwLPVAAtrgERFERVFASYgTLVWLSDLKRWAD 141 6778**************************************9999999999997786553337******998799999******** PP HHHHHEEEEEEEEE CS Methyltransf_11 82 eiaRvLkpgGllvi 95 ia+vL pgG++v+ tr|Q9I128|Q9I128_PSEAE 142 GIAQVLVPGGRFVL 155 ***********985 PP >> sp|Q9I0S1|TAM_PSEAE Trans-aconitate 2-methyltransferase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / C # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 35.5 0.0 3.7e-11 3.7e-09 2 94 .. 49 139 .. 48 140 .. 0.88 Alignments for each domain: == domain 1 score: 35.5 bits; conditional E-value: 3.7e-11 EET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEE CS Methyltransf_11 2 dvGcGtGrlaealakrg..arvvgvDlspemlklakekaseeglvefvvadaeklpfpdnsfDlvvssevlhhvedpekalkeiaRvLkp 89 d+GcGtG+ +e la+r a+++gvD s eml+ a + + ++ +a++++ ++ l ++ +vlh++ed+ k+l + L p sp|Q9I0S1|TAM_PSEAE 49 DLGCGTGIATELLARRWplAELYGVDSSVEMLEEAAR---LPIKASWERANLRH-WCAERPASLLFAAAVLHFLEDHGKLLPRLLGQLTP 134 9*************9999**************66633...33334689999998.5788899**************************** PP EEEEE CS Methyltransf_11 90 gGllv 94 gG l+ sp|Q9I0S1|TAM_PSEAE 135 GGCLA 139 **886 PP >> tr|Q9I4P1|Q9I4P1_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.5 0.0 3.3e-10 3.2e-08 1 94 [. 72 175 .. 72 176 .. 0.88 Alignments for each domain: == domain 1 score: 32.5 bits; conditional E-value: 3.3e-10 EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-..EEETTEECCCT.SS-TT...-EEEEEEES-CCC-..CCHH CS Methyltransf_11 1 LdvGcGtGrlaealakrg..arvvgvDlspemlklakekaseegl..vefvvadaekl.pfpdn...sfDlvvssevlhhv..edpe 77 Ld+GcG Gr la+ + a+++g+D+s+++++ a ++a+++g + f++++a+++ p + + +Dl ++s l ++ d + tr|Q9I4P1|Q9I4P1_PSEAE 72 LDIGCGIGRWGWLLAEEApqADYLGIDFSAALVEKACDEARQRGYerLLFQRMSATDIrPAELAlspPYDLLLVSGLLIYLndSDCQ 158 8**************88889*************99999999988889778999999876644333349*************8889** PP HHHHHHHHHEEEEEEEE CS Methyltransf_11 78 kalkeiaRvLkpgGllv 94 ++l+++ +++ pgG+++ tr|Q9I4P1|Q9I4P1_PSEAE 159 ELLRQALQLCAPGGRIY 175 **************997 PP >> sp|Q9I5G4|CMOB_PSEAE tRNA U34 carboxymethyltransferase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CI # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.7 0.0 5.8e-10 5.7e-08 1 95 [] 126 223 .. 126 223 .. 0.84 Alignments for each domain: == domain 1 score: 31.7 bits; conditional E-value: 5.8e-10 EEET-TTSHHHHHHHHTT.SEEEEEES-HHHHHHHHHHCCHHT-....EEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHH CS Methyltransf_11 1 LdvGcGtGrlaealakrg.arvvgvDlspemlklakekaseegl....vefvvadaeklpfpdnsfDlvvssevlhhvedpekalkeia 84 LdvGcG+G+++ + g ++vvgvD++ +l ++ a +++l + +e+lp + + fD v+s vl h p + l ++ sp|Q9I5G4|CMOB_PSEAE 126 LDVGCGNGYYQWRMLGAGaESVVGVDPNWLFL--CQFLAAKRYLpelpAWHLPLALEDLPEKLEGFDTVFSMGVLYHRRSPIDHLLALK 212 8************998889*******887777..44444444443344333889999******************************** PP HHEEEEEEEEE CS Methyltransf_11 85 RvLkpgGllvi 95 +Lk gG lv+ sp|Q9I5G4|CMOB_PSEAE 213 DCLKRGGELVL 223 *******9985 PP >> tr|Q9HU69|Q9HU69_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.3 0.0 7.3e-10 7.2e-08 1 94 [. 33 127 .. 33 128 .. 0.94 Alignments for each domain: == domain 1 score: 31.3 bits; conditional E-value: 7.3e-10 EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-.EEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHH CS Methyltransf_11 1 LdvGcGtGrlaealakrgarvvgvDlspemlklakekaseegl.vefvvadaeklpfpdnsfDlvvssevlhhvedpekalkeiaRv 86 L v+ G Gr+a la g +v+gvD s+ l+ a++ a+ +g+ ++ +v d+ + p + f +vvs ++ + ++ + + R tr|Q9HU69|Q9HU69_PSEAE 33 LSVAEGEGRNAVFLASLGLEVLGVDGSTVGLAKARRLAEAKGVsIDTLVVDLADYEPPAAAFGAVVSIFAHLPSRVRGRLNRLLERS 119 66888*************************************9*999********99**********9887777999********** PP EEEEEEEE CS Methyltransf_11 87 LkpgGllv 94 L+pgGl++ tr|Q9HU69|Q9HU69_PSEAE 120 LRPGGLFL 127 *****997 PP >> tr|Q9I2T0|Q9I2T0_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.4 0.0 6e-09 6e-07 44 94 .. 82 131 .. 64 132 .. 0.85 Alignments for each domain: == domain 1 score: 28.4 bits; conditional E-value: 6e-09 EEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEEEEE CS Methyltransf_11 44 vefvvadaeklpfpdnsfDlvvssevlhhvedpekalkeiaRvLkpgGllv 94 v++ +++ p+ ++ D+v++++ l+++ p+++l+e+aR ++pgG+l+ tr|Q9I2T0|Q9I2T0_PSEAE 82 VDIACEEGA-WPLSEHAADVVLLQHGLDFCLSPHRLLREAARTVRPGGHLL 131 555666665.69*************************************97 PP >> sp|O87131|CHER1_PSEAE Chemotaxis protein methyltransferase 1 OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 2264 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.5 0.0 2e-07 2e-05 19 95 .] 138 247 .. 128 247 .. 0.62 Alignments for each domain: == domain 1 score: 23.5 bits; conditional E-value: 2e-07 SEEEEEES-HHHHHHHHHHCCHHT-................................EEETTEECCCTSS-T.T-EEEEEEES-CCC- CS Methyltransf_11 19 arvvgvDlspemlklakekaseegl................................vefvvadaeklpfpd.nsfDlvvssevlhhv 73 ++v++Dls ml++ak +++ + l vef+ ++ + +++ ++fD+v++++vl ++ sp|O87131|CHER1_PSEAE 138 VQIVATDLSGSMLTAAK-AGEYDTLamgrglsperlqryfdakgpgrwavkpairsrVEFRALNLLDS-YASlGKFDMVFCRNVLIYF 223 66666666666665552.22222222344434444433333333333344444444455566666664.44448************** PP ..CCHHHHHHHHHHHEEEEEEEEE CS Methyltransf_11 74 ..edpekalkeiaRvLkpgGllvi 95 e +++l i+ LkpgG+l++ sp|O87131|CHER1_PSEAE 224 saEVKRDILLRIHGTLKPGGYLFL 247 999999***************985 PP >> sp|Q9HUW3|PRMA_PSEAE Ribosomal protein L11 methyltransferase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 2264 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.1 0.0 1.3e-07 1.3e-05 1 67 [. 162 229 .. 162 254 .. 0.74 Alignments for each domain: == domain 1 score: 24.1 bits; conditional E-value: 1.3e-07 EEET-TTSHHHHHHHHTT.SEEEEEES-HHHHHHHHHHCCHHT-..EEETTEECCCTS..S-TT-EEEEEEE CS Methyltransf_11 1 LdvGcGtGrlaealakrg.arvvgvDlspemlklakekaseegl..vefvvadaeklp..fpdnsfDlvvss 67 Ld+GcG+G+la a g +r vg+D++p++l++++++as++g+ + + lp +p + D+ v++ sp|Q9HUW3|PRMA_PSEAE 162 LDFGCGSGILAIAALLLGaERAVGTDIDPQALEASRDNASRNGIepA---RFPVY-LPadLPQRQADVLVAN 229 8**************9999**********************995442...33333.2222666667776666 PP >> tr|Q9I1T6|Q9I1T6_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.3 0.0 4.7e-07 4.7e-05 2 67 .. 142 209 .. 141 216 .. 0.87 Alignments for each domain: == domain 1 score: 22.3 bits; conditional E-value: 4.7e-07 EET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-..EEETTEECCCTSS-TT-EEEEEEE CS Methyltransf_11 2 dvGcGtGrlaealakrg..arvvgvDlspemlklakekaseegl..vefvvadaeklpfpdnsfDlvvss 67 d+GcG+G a +a + a+v g+D++p++l+la+ +a +g+ +++ ++d+ + + fDl+v++ tr|Q9I1T6|Q9I1T6_PSEAE 142 DIGCGAGPGAIRIAMACpdAEVHGLDINPAALDLARVNAALAGVgnLTLARSDLL--SQAPGRFDLIVAN 209 9*************88899****************99999999866655555555..578899**99986 PP >> sp|Q9HVC8|PRMC_PSEAE Release factor glutamine methyltransferase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.4 0.0 9.3e-07 9.2e-05 1 42 [. 113 156 .. 113 170 .. 0.83 Alignments for each domain: == domain 1 score: 21.4 bits; conditional E-value: 9.3e-07 EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT CS Methyltransf_11 1 LdvGcGtGrlaealakrg..arvvgvDlspemlklakekaseeg 42 Ld+G GtG++a ala +v++vD +e+++la+++ ++ sp|Q9HVC8|PRMC_PSEAE 113 LDLGTGTGAIALALASERplWTVTAVDRVEEAVALAERNRQRLL 156 8**************55558****************88877654 PP >> sp|Q9X6R0|SPEE1_PSEAE Polyamine aminopropyltransferase 1 OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.1 0.0 1.1e-06 0.00011 3 94 .. 81 186 .. 79 187 .. 0.86 Alignments for each domain: == domain 1 score: 21.1 bits; conditional E-value: 1.1e-06 ET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-.......EEETTEECCCT.SS-TT-EEEEEEES........-CCC CS Methyltransf_11 3 vGcGtGrlaealakrg..arvvgvDlspemlklakekaseegl.......vefvvadaekl.pfpdnsfDlvvsse........vlhh 72 +G G G +++++ak+ +r++ v+++ ++++++ke ++ +++v d ++ ++ fD+++s + v sp|Q9X6R0|SPEE1_PSEAE 81 IGGGDGGMLREVAKHKsvERITMVEIDGTVVDMCKEFLPNHSQgafddprLNLVIDDGMRFvATTEERFDVIISDStdpigpgeV--- 165 89***********66677********************999999999*9999999999997699**********99444432222... PP -CCHHHHHHHHHHHEEEEEEEE CS Methyltransf_11 73 vedpekalkeiaRvLkpgGllv 94 e + + ++R+L gG+lv sp|Q9X6R0|SPEE1_PSEAE 166 -LFSENFYQACRRCLNEGGILV 186 .467889************997 PP >> tr|Q9I279|Q9I279_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.0 0.1 6e-07 5.9e-05 58 94 .. 80 116 .. 26 117 .. 0.91 Alignments for each domain: == domain 1 score: 22.0 bits; conditional E-value: 6e-07 TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEEEEE CS Methyltransf_11 58 dnsfDlvvssevlhhvedpekalkeiaRvLkpgGllv 94 ++ fD+vv+s+vl+h +d+ ++l ++ L+ gG l+ tr|Q9I279|Q9I279_PSEAE 80 ESAFDFVVCSNVLDHTADWIQFLVDCVGRLRTGGELL 116 468*******************************986 PP >> tr|Q9HWG4|Q9HWG4_PSEAE Pyochelin synthetase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.6 0.0 1.4 1.4e+02 62 93 .. 1023 1054 .. 1016 1056 .. 0.85 2 ! 16.5 0.0 3e-05 0.003 1 95 [] 1162 1269 .. 1162 1269 .. 0.84 Alignments for each domain: == domain 1 score: 1.6 bits; conditional E-value: 1.4 EEEEEES-CCC-CCHHHHHHHHHHHEEEEEEE CS Methyltransf_11 62 DlvvssevlhhvedpekalkeiaRvLkpgGll 93 Dl ++ + l e ++++l+ + R L+ gG+l tr|Q9HWG4|Q9HWG4_PSEAE 1023 DLATLCQRLGIAEARQRLLRHWLRQLEEGGYL 1054 66666777777799****************98 PP == domain 2 score: 16.5 bits; conditional E-value: 3e-05 EEET-TTSHHHHHHH.......HTT..SEEEEEES-HHHHHHHHHHCCHHT-EEE....TTEECCCTSS-TT-EEEEEEES-CCC CS Methyltransf_11 1 LdvGcGtGrlaeala.......krg..arvvgvDlspemlklakekaseeglvef....vvadaeklpfpdnsfDlvvssevlhh 72 L++G+Gt + ++ + +rg +++ +D+s ++l++a+e+ +++ v+f + +d+ + ++ +s+D+ +ss +l++ tr|Q9HWG4|Q9HWG4_PSEAE 1162 LELGAGTAAASRTVIarlaplvQRGaeVDYLFTDVSSYFLAAARERFADQPWVRFgrfdMNGDLLDQGVAPHSVDILLSSGALNN 1246 6777887777776665555666677899999********************99996666677777889***************** PP -CCHHHHHHHHHHHEEEEEEEEE CS Methyltransf_11 73 vedpekalkeiaRvLkpgGllvi 95 d ++l+ ++ +L + +lvi tr|Q9HWG4|Q9HWG4_PSEAE 1247 ALDTPALLAGLRELLSADAWLVI 1269 *99*****999999999888875 PP >> tr|G3XCT5|G3XCT5_PSEAE Methyltransferase PilK OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.3 0.1 1.7e-05 0.0017 3 95 .] 122 259 .. 120 259 .. 0.70 Alignments for each domain: == domain 1 score: 17.3 bits; conditional E-value: 1.7e-05 ET-TTSHHHHHHH............HTTSEEEEEES-HHHHHHHHHHCCHHT-.........EEE...................... CS Methyltransf_11 3 vGcGtGrlaeala............krgarvvgvDlspemlklakekaseegl.........vef...................... 46 vGc +G la + + v+g+D+s ++l++a++++ +++ tr|G3XCT5|G3XCT5_PSEAE 122 VGCSSGEEPYSLAmcaaqvlrgqerEDFFGVTGTDISLHALQRARQANYPARKleqleaglvE-Rycerqadgsfsvktiltervcc 207 5666665555555555555444333333789*************9888888876775555541.15666666777777777777744 PP TTEECCCT.SS-TT-EEEEEEES-CCC-..CCHHHHHHHHHHHEEEEEEEEE CS Methyltransf_11 47 vvadaekl.pfpdnsfDlvvssevlhhv..edpekalkeiaRvLkpgGllvi 95 + ++ +l + p + +D++++++ l ++ +++++l+ +a L pgGllvi tr|G3XCT5|G3XCT5_PSEAE 208 ARLNVLDLaKAPWSGMDVIFCQNLLIYFrrWRRREILNRLAERLAPGGLLVI 259 444444443455567*************887999***************996 PP >> sp|Q9HXT5|WSPC_PSEAE Probable biofilm formation methyltransferase WspC OS=Pseudomonas aeruginosa (strain ATCC 15692 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.9 0.0 5.7e-06 0.00056 43 95 .] 176 235 .. 112 235 .. 0.83 Alignments for each domain: == domain 1 score: 18.9 bits; conditional E-value: 5.7e-06 -...EEETTEECCC..TSS-TT-EEEEEEES-CCC-..CCHHHHHHHHHHHEEEEEEEEE CS Methyltransf_11 43 l...vefvvadaek..lpfpdnsfDlvvssevlhhv..edpekalkeiaRvLkpgGllvi 95 + v+f+++++ + l ++ +D+v++++ l ++ + ++++++ ++R+L+p+G ++i sp|Q9HXT5|WSPC_PSEAE 176 VrrkVRFRCGNLLDpgLLAGEAPYDFVFCRNLLIYFdrPTQSEVVEVLKRLLRPDGAMFI 235 1334999******955567889**************888999**************9876 PP >> tr|Q9HWV3|Q9HWV3_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.8 0.0 1.2e-05 0.0012 1 93 [. 65 163 .. 65 165 .. 0.85 Alignments for each domain: == domain 1 score: 17.8 bits; conditional E-value: 1.2e-05 EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-..EEE..........TTEECC.CTSS-TT-EEEEEEES-CCC-C CS Methyltransf_11 1 LdvGcGtGrlaealakrgarvvgvDlspemlklakekaseegl..vef..........vvadae.klpfpdnsfDlvvssevlhhve 74 Ld+G G+G + l r +v+++ ++ l++a+ + ++ g+ ve+ +++d lpf+d++fDlv ++ tr|Q9HWV3|Q9HWV3_PSEAE 65 LDMGTGGGEWLSRLPYRPPLTVATEGWAPNLEIARGRLEPLGIrvVEVegapdnhrqgREGDGGgALPFADGTFDLVGNRH------ 145 8**************777999*****************99997775558888888888999998459**********8885...... PP CHHHHHHHHHHHEEEEEEE CS Methyltransf_11 75 dpekalkeiaRvLkpgGll 93 + + +e++RvL pgG + tr|Q9HWV3|Q9HWV3_PSEAE 146 -ESYLPSEVRRVLAPGGCF 163 .234558999999999987 PP >> sp|Q9I525|RLMD_PSEAE 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD OS=Pseudomonas aeruginosa (strain ATCC 1569 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.2 0.0 4.5e-06 0.00045 1 64 [. 309 378 .. 309 382 .. 0.81 Alignments for each domain: == domain 1 score: 19.2 bits; conditional E-value: 4.5e-06 EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-..EEETTEECCC....TSS-TT-EEEE CS Methyltransf_11 1 LdvGcGtGrlaealakrgarvvgvDlspemlklakekaseegl..vefvvadaek....lpfpdnsfDlv 64 Ld+ cG G ++ +la+r+arvvgv+ ++m+++a ++a +gl f +ad++k p +++ f +v sp|Q9I525|RLMD_PSEAE 309 LDLFCGLGNFSLPLARRVARVVGVEGVAAMVERAGANALANGLgnAHFFQADLSKalaeAPWAEQGFTAV 378 7888****************************99888888777778888888885433346666666666 PP >> tr|Q9I6D9|Q9I6D9_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.1 0.0 4.1 4.1e+02 62 92 .. 123 154 .. 88 156 .. 0.72 2 ! 16.7 0.1 2.7e-05 0.0026 8 94 .. 235 335 .. 231 336 .. 0.72 Alignments for each domain: == domain 1 score: 0.1 bits; conditional E-value: 4.1 EEEEEES-CCC-.CCHHHHHHHHHHHEEEEEE CS Methyltransf_11 62 Dlvvssevlhhv.edpekalkeiaRvLkpgGl 92 D+ v++ + + + +++l+ + +vLkp + tr|Q9I6D9|Q9I6D9_PSEAE 123 DVLVVQLASAAMeLRKDEVLAALLQVLKPAAV 154 55555555555544678999999*****9765 PP == domain 2 score: 16.7 bits; conditional E-value: 2.7e-05 SHHHHHHHHTT.SEEEEEES-HHHHHHHHHHCCHHT-...EEETTEECCC....TSS-TT-EEEEEEES..-CCC-..C.......C CS Methyltransf_11 8 Grlaealakrg.arvvgvDlspemlklakekaseegl...vefvvadaek....lpfpdnsfDlvvsse..vlhhv..e.......d 75 G+ a+a+ g ++v++vD s+ +l+ ++++a +g+ v +v++d+ + l+ +d+ fD+v++ + + tr|Q9I6D9|Q9I6D9_PSEAE 235 GIQAAAF---GaSEVMCVDASAFALDGVERNAALNGVaekVACVEGDVFEalreLKAADERFDVVIADPpaF--IKrkKdlkngeaA 316 4444444...449************88888888888888899*****995555599**********987432..2223133344447 PP HHHHHHHHHHHEEEEEEEE CS Methyltransf_11 76 pekalkeiaRvLkpgGllv 94 +++ ++++R+L ++G+lv tr|Q9I6D9|Q9I6D9_PSEAE 317 YRRLNEQAMRLLSKDGILV 335 7777788888888888876 PP >> sp|Q9HV78|TRMA_PSEAE tRNA/tmRNA (uracil-C(5))-methyltransferase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.5 0.0 3.2e-05 0.0032 1 54 [. 212 267 .. 212 274 .. 0.86 2 ? -0.5 0.0 6.1 6e+02 11 38 .. 306 333 .. 301 353 .. 0.67 Alignments for each domain: == domain 1 score: 16.5 bits; conditional E-value: 3.2e-05 EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-..EEETTEECCCT CS Methyltransf_11 1 LdvGcGtGrlaealakrgarvvgvDlspemlklakekaseegl..vefvvadaekl 54 L++ cG+G ++ +la r+++v+++++s+ +++a ++ ++ + v++v+ +ae+l sp|Q9HV78|TRMA_PSEAE 212 LELYCGNGNFTLPLATRVRKVLATEISKSSVNAALANLADNAVdnVSLVRLSAEEL 267 5667***************************9988888887777788899999987 PP == domain 2 score: -0.5 bits; conditional E-value: 6.1 HHHHHHTTSEEEEEES-HHHHHHHHHHC CS Methyltransf_11 11 aealakrgarvvgvDlspemlklakeka 38 +++la+r++r++ + +pe+l++ ++ sp|Q9HV78|TRMA_PSEAE 306 TCELARRFERILYISCNPETLAQNIAQL 333 6889999999999999999994433333 PP >> sp|Q9I347|PRMB_PSEAE 50S ribosomal protein L3 glutamine methyltransferase OS=Pseudomonas aeruginosa (strain ATCC 156 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.2 0.0 3.9e-05 0.0039 2 67 .. 131 200 .. 130 219 .. 0.82 2 ? 1.1 0.0 2 1.9e+02 24 94 .. 231 252 .. 224 275 .. 0.69 Alignments for each domain: == domain 1 score: 16.2 bits; conditional E-value: 3.9e-05 EET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-...EEETTEECCCTSS-TT-EEEEEEE CS Methyltransf_11 2 dvGcGtGrlaealakrg..arvvgvDlspemlklakekaseegl...vefvvadaeklpfpdnsfDlvvss 67 d+ G+G + a+a + a+vv Dls +l++a+ ++++ +l v v++d +p + fDl+vs+ sp|Q9I347|PRMB_PSEAE 131 DLCTGSGCIGIACAYAFeqAEVVLADLSFDALEVANVNIERHDLgerVYTVQGDGFA-GLPGQRFDLIVSN 200 56555555555555334567*********************999*99889******7.9**********97 PP == domain 2 score: 1.1 bits; conditional E-value: 2 EES-HHHHHHHHHHCCHHT-EEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEEEEE CS Methyltransf_11 24 vDlspemlklakekaseeglvefvvadaeklpfpdnsfDlvvssevlhhvedpekalkeiaRvLkpgGllv 94 +Dl +ml+ a ++ se+gl l+ sp|Q9I347|PRMB_PSEAE 231 LDLVRRMLAEAADHLSEKGL-------------------------------------------------LI 252 56666666666666666655.................................................33 PP >> sp|Q9HZG0|RLMKL_PSEAE Ribosomal RNA large subunit methyltransferase K/L OS=Pseudomonas aeruginosa (strain ATCC 15692 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.0 0.0 8.7e-05 0.0087 8 95 .] 576 679 .. 569 679 .. 0.78 Alignments for each domain: == domain 1 score: 15.0 bits; conditional E-value: 8.7e-05 SHHHHHHHHTT.SEEEEEES-HHHHHHHHHHCCHHT-...EEETTEECCC.TSS-TT-EEEEEEES...........-CCC-CCHHHH CS Methyltransf_11 8 Grlaealakrg.arvvgvDlspemlklakekaseegl...vefvvadaek.lpfpdnsfDlvvsse...........vlhhvedpeka 79 + + a+ g ++++ vDls++ l++a+++ s +g+ ++v++d+ + l d+++ l+++ v++ d+ ++ sp|Q9HZG0|RLMKL_PSEAE 576 ATATVHAARGGaRSTTSVDLSKTYLDWARRNLSLNGFsdkQRLVHGDVMEwLREDDGQYELIFIDPptfsnskrmegVFDVQRDHVEL 663 556667776669999************************9888******9679999******98776444445444444444588888 PP HHHHHHHEEEEEEEEE CS Methyltransf_11 80 lkeiaRvLkpgGllvi 95 l+ ++ L pgG+l++ sp|Q9HZG0|RLMKL_PSEAE 664 LDLAMARLAPGGVLYF 679 8888888888888775 PP >> tr|Q9I3U2|Q9I3U2_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.3 0.0 3.5e-05 0.0034 3 68 .. 86 161 .. 84 184 .. 0.81 Alignments for each domain: == domain 1 score: 16.3 bits; conditional E-value: 3.5e-05 ET-TTSHHHHHHH....HTT.SEEEEEES-HHHHHHHHHHCCHHT-...EEETTEECCC.T..SS-TT-EEEEEEES CS Methyltransf_11 3 vGcGtGrlaeala....krg.arvvgvDlspemlklakekaseegl...vefvvadaek.l..pfpdnsfDlvvsse 68 +G G+ + +la ++g +r++g ++ p ++a+++ gl ve++++da + l ++pd s+Dlv++ tr|Q9I3U2|Q9I3U2_PSEAE 86 FGTSFGLSTLHLAaalrDNGgGRLIGSEFEPSKAERARRNLAAGGLldlVELREGDALQtLakDLPD-SIDLVLLDG 161 677777777777766656779****************************9********843334777.*****9865 PP >> tr|Q9HYR0|Q9HYR0_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.9 0.0 4.9e-05 0.0048 2 50 .. 62 113 .. 61 125 .. 0.86 Alignments for each domain: == domain 1 score: 15.9 bits; conditional E-value: 4.9e-05 EET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-...EEETTEE CS Methyltransf_11 2 dvGcGtGrlaealakrgarvvgvDlspemlklakekaseegl...vefvvad 50 ++Gc Gr +e ar++gvDl+++++++ ++++++eg+ + vv d tr|Q9HYR0|Q9HYR0_PSEAE 62 ELGCYDGRALEIARLLNARYLGVDLDQRAIETLRTRIEREGMsdrADTVVDD 113 89*********999888**********************9976665555555 PP >> sp|Q9HVG4|RSMC_PSEAE Ribosomal RNA small subunit methyltransferase C OS=Pseudomonas aeruginosa (strain ATCC 15692 / # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.2 0.0 1.8 1.8e+02 33 72 .. 132 173 .. 107 183 .. 0.65 2 ! 11.8 0.0 0.00088 0.087 1 93 [. 196 294 .. 196 296 .. 0.80 Alignments for each domain: == domain 1 score: 1.2 bits; conditional E-value: 1.8 HHHHHCCHHT-...EEETTEECC..CTSS-TT-EEEEEEES-CCC CS Methyltransf_11 33 lakekaseegl...vefvvadae..klpfpdnsfDlvvssevlhh 72 l++ ++++++ + +a a+ +lp++d+ +v + v+ h sp|Q9HVG4|RSMC_PSEAE 132 LWQVRIEQAPAepdL---HALAQrySLPLADGELQVVSLPGVFSH 173 444455555444322...333331259**********99999988 PP == domain 2 score: 11.8 bits; conditional E-value: 0.00088 EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-.EEETTEECCCTSS-TT-EEEEEEES-CCC-.....CCHHHHHH CS Methyltransf_11 1 LdvGcGtGrlaealakrg..arvvgvDlspemlklakekaseegl.vefvvadaeklpfpdnsfDlvvssevlhhv.....edpekalk 81 Ld+GcG+G l + l++r+ +r+ +D+++ +++ ++ +gl e++ ad + + ++vs+ +h + e++l+ sp|Q9HVG4|RSMC_PSEAE 196 LDFGCGAGVLGAVLKRRYpaSRLSLLDVDAFAVESSRLTLAANGLdGEVIAADGID--GAPRELAAIVSNPPFHQGvhtdyQASERLLQ 282 8**************9999*9*******9999999999999999775557777776..4444666677776555444656689999999 PP HHHHHEEEEEEE CS Methyltransf_11 82 eiaRvLkpgGll 93 +a L pgG l sp|Q9HVG4|RSMC_PSEAE 283 RAAEHLAPGGEL 294 999999999976 PP >> sp|Q9I6V7|CHER2_PSEAE Chemotaxis protein methyltransferase 2 OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 2264 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.6 0.0 6.5 6.5e+02 19 37 .. 144 162 .. 131 180 .. 0.77 2 ! 12.9 0.0 0.00042 0.041 44 94 .. 202 255 .. 185 256 .. 0.77 Alignments for each domain: == domain 1 score: -0.6 bits; conditional E-value: 6.5 SEEEEEES-HHHHHHHHHH CS Methyltransf_11 19 arvvgvDlspemlklakek 37 ++v+ D+++ +l++a++ sp|Q9I6V7|CHER2_PSEAE 144 VKIVASDIDTGVLDCARQG 162 6799999999999999874 PP == domain 2 score: 12.9 bits; conditional E-value: 0.00042 EEETTEECCCTSS-.TT-EEEEEEES-CCC-..CCHHHHHHHHHHHEEEEEEEE CS Methyltransf_11 44 vefvvadaeklpfp.dnsfDlvvssevlhhv..edpekalkeiaRvLkpgGllv 94 vef++ ++ + + + D++++++v+ ++ + + ++l+ ++ +L+p+Gl++ sp|Q9I6V7|CHER2_PSEAE 202 VEFRQINLLEADWSiAGELDAIFCRNVMIYFdkPTQTRLLERMVALLRPEGLFF 255 5555555555543304689************8879999*************997 PP >> tr|Q9HUX4|Q9HUX4_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.9 0.1 9.9e-05 0.0098 11 93 .. 135 217 .. 124 219 .. 0.77 Alignments for each domain: == domain 1 score: 14.9 bits; conditional E-value: 9.9e-05 HHHHH.HTTSEEEEEES-HHHHHHHHHHCCHHT-EEETTEECCCTSS-TT-EEEEEEES-CCC-.....CCHHHHHHHHHHHEEEEE CS Methyltransf_11 11 aeala.krgarvvgvDlspemlklakekaseeglvefvvadaeklpfpdnsfDlvvssevlhhv.....edpekalkeiaRvLkpgG 91 a la + ga++ ++D+++e+l +a+e a+ +g ++a+++ +p l +s+ + h++ ++ +++l++i++v++ + tr|Q9HUX4|Q9HUX4_PSEAE 135 ALVLArEVGAHLCCLDIDEEALGCAREIARCQG----LEARMQFSSLPP--AELAFSRDATHFLiaslvQQKSAVLAQIRQVMRADA 215 334444555***********************9....777777444555..56999999999999888989***********99887 PP EE CS Methyltransf_11 92 ll 93 ++ tr|Q9HUX4|Q9HUX4_PSEAE 216 KV 217 65 PP >> sp|P45683|PIMT_PSEAE Protein-L-isoaspartate O-methyltransferase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.1 0.0 0.00018 0.017 2 44 .. 83 127 .. 82 140 .. 0.88 Alignments for each domain: == domain 1 score: 14.1 bits; conditional E-value: 0.00018 EET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-..E CS Methyltransf_11 2 dvGcGtGrlaealakrgarvvgvDlspemlklakekaseegl..v 44 ++G G+G+ ++ la+ ++rv+ v+ +++ + ake+ e +l v sp|P45683|PIMT_PSEAE 83 EIGTGSGYQTAVLAQLVERVFSVERIQALQDKAKERLAELNLrnV 127 89*********************************9998876554 PP >> tr|G3XCV2|G3XCV2_PSEAE Dihydroaeruginoic acid synthetase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.0 0.0 8.7 8.7e+02 4 58 .. 117 175 .. 116 181 .. 0.72 2 ! 12.6 0.0 0.00049 0.049 13 94 .. 1147 1227 .. 1140 1228 .. 0.85 Alignments for each domain: == domain 1 score: -1.0 bits; conditional E-value: 8.7 T-TTSHHHHHHHHTT.SEEEEEES-HHHHHHHHHHCCHHT-...EEETTEECCCTSS-T CS Methyltransf_11 4 GcGtGrlaealakrg.arvvgvDlspemlklakekaseegl...vefvvadaeklpfpd 58 G G+G ++ + ++ ++ + D++p+ l++a e+++++++ +f+ ++ + lp p tr|G3XCV2|G3XCV2_PSEAE 117 GRGAGEVLGNVSCHAfLEFRTRDVDPQRLAAAAECVRQRHPmlrARFLDGRQQILPTPP 175 77888888888844458888889999999999999999998866666666666566655 PP == domain 2 score: 12.6 bits; conditional E-value: 0.00049 HHHHTTSEEEEEES-HHHHHHHHHHCCHHT-EEETTEECCCTSS-T.T-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEEEEE CS Methyltransf_11 13 alakrgarvvgvDlspemlklakekaseeglvefvvadaeklpfpd.nsfDlvvssevlhhvedpekalkeiaRvLkpgGllv 94 l + g +++ ++ s +l++a ++ +e+ +v + d lp + + +D v+s+++lh e ++ l+ +a +L+p G+l+ tr|G3XCV2|G3XCV2_PSEAE 1147 SLLRPGLELTLFERSRVLLDAAATRLPERIVV--QALDDGLLPAEHlGRYDRVISFAALHAYEASREGLALAAALLRPQGRLL 1227 55667789999999***********9999732..44444447999989********************************997 PP >> sp|Q9HT10|RSMG_PSEAE Ribosomal RNA small subunit methyltransferase G OS=Pseudomonas aeruginosa (strain ATCC 15692 / # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.0 0.0 0.00038 0.038 1 76 [. 78 158 .. 78 174 .. 0.79 Alignments for each domain: == domain 1 score: 13.0 bits; conditional E-value: 0.00038 EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-..EEETTEECCCTSS-TT-EEEEEEES..-CCC-CCH CS Methyltransf_11 1 LdvGcGtGrlaealakrg..arvvgvDlspemlklakekaseegl..vefvvadaeklpfpdnsfDlvvsse..vlhhvedp 76 LdvG+G+G +la + +r++ +D + + +++ + + e +l +e+v++++e + p++ fD +vs++ +l+ ++++ sp|Q9HT10|RSMG_PSEAE 78 LDVGSGGGMPGVPLAILFpeKRLTLLDSNGKKTRFLTQVKLELKLanLEVVHSRVEAFR-PESPFDGIVSRAfsSLEDFANW 158 8**************77789*******99998877755555555566999******853.5678*****9974445555555 PP >> sp|Q9I7A9|RSMB_PSEAE Ribosomal RNA small subunit methyltransferase B OS=Pseudomonas aeruginosa (strain ATCC 15692 / # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.1 0.0 4.1 4e+02 10 42 .. 185 217 .. 181 239 .. 0.76 2 ? 10.4 0.0 0.0025 0.25 1 53 [. 248 304 .. 248 312 .. 0.87 Alignments for each domain: == domain 1 score: 0.1 bits; conditional E-value: 4.1 HHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT CS Methyltransf_11 10 laealakrgarvvgvDlspemlklakekaseeg 42 ++++la+ g + ++D+s ++la + ++e sp|Q9I7A9|RSMB_PSEAE 185 YLAELAEAGIKARACDYSRDGIQLAAPRDVREL 217 6778999999999*******9999987777764 PP == domain 2 score: 10.4 bits; conditional E-value: 0.0025 EEET-TTSHHHHHHHHTT...SEEEEEES-HHHHHHHHHHCCHHT-.EEETTEECCC CS Methyltransf_11 1 LdvGcGtGrlaealakrg...arvvgvDlspemlklakekaseegl.vefvvadaek 53 Ld+ c G +++l ++ a+vv+vDl + l +++e+ ++ gl ++v ada+ sp|Q9I7A9|RSMB_PSEAE 248 LDACCAPGGKTCHLLETQpelAEVVAVDLEESRLVRVRENLQRLGLqASLVAADARA 304 788899999999999777789**********************99887778888875 PP >> sp|Q9HVH4|RLMG_PSEAE Ribosomal RNA large subunit methyltransferase G OS=Pseudomonas aeruginosa (strain ATCC 15692 / # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.8 0.0 0.00088 0.088 2 74 .. 237 313 .. 236 339 .. 0.75 Alignments for each domain: == domain 1 score: 11.8 bits; conditional E-value: 0.00088 EET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-...EEETTEECCCTSS-TT-EEEEEEES-CCC-C CS Methyltransf_11 2 dvGcGtGrlaealakrg..arvvgvDlspemlklakekaseegl...vefvvadaeklpfpdnsfDlvvssevlhhve 74 d+GcG+G l a+a a++ vD s +++ a+e+ + + +f+ d + +s Dlv+++ +h + sp|Q9HVH4|RLMG_PSEAE 237 DLGCGNGVLGIAYALLNpqAELALVDESYMAVQSARENWRAALGerpATFRADDGLA-GQAAGSLDLVLCNPPFHQQQ 313 9*******999999555679******9999999997777665445656666666654.78999*******99888775 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (95 nodes) Target sequences: 5563 (1857172 residues searched) Passed MSV filter: 286 (0.0514111); expected 111.3 (0.02) Passed bias filter: 271 (0.0487147); expected 111.3 (0.02) Passed Vit filter: 81 (0.0145605); expected 5.6 (0.001) Passed Fwd filter: 56 (0.0100665); expected 0.1 (1e-05) Initial search space (Z): 5563 [actual number of targets] Domain search space (domZ): 56 [number of targets reported over threshold] # CPU time: 0.07u 0.00s 00:00:00.07 Elapsed: 00:00:00.03 # Mc/sec: 5881.04 // [ok]