# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/Methyltransf_11.hmm.txt # target sequence database: proteomes/Thermococcus_kodakarensis.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Methyltransf_11 [M=95] Accession: PF08241.11 Description: Methyltransferase domain Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-27 92.8 0.0 2.8e-27 92.3 0.0 1.2 1 tr|Q5JG68|Q5JG68_THEKO SAM-dependent methyltransferase, UbiE 8.4e-25 84.4 0.0 1.3e-24 83.8 0.0 1.3 1 tr|Q5JHQ2|Q5JHQ2_THEKO SAM-dependent methyltransferase, UbiE 3.9e-21 72.6 0.0 6.1e-21 72.0 0.0 1.3 1 tr|Q5JFQ4|Q5JFQ4_THEKO SAM-dependent methyltransferase, UbiE 2.3e-20 70.2 0.0 3.8e-20 69.5 0.0 1.4 1 tr|Q5JG60|Q5JG60_THEKO SAM-dependent methyltransferase, UbiE 5.1e-20 69.1 0.0 9.8e-20 68.1 0.0 1.5 1 tr|Q5JGN8|Q5JGN8_THEKO SAM-dependent methyltransferase, UbiE 1.2e-16 58.3 0.1 2e-16 57.5 0.1 1.4 1 tr|Q5JFS6|Q5JFS6_THEKO Predicted SAM-dependent methyltransfe 1.1e-12 45.6 0.0 1e-11 42.5 0.0 2.1 2 tr|Q5JED8|Q5JED8_THEKO SAM-dependent methyltransferase, UbiE 4.6e-10 37.2 0.0 8.5e-10 36.3 0.0 1.5 1 tr|Q5JDR0|Q5JDR0_THEKO SAM-dependent methyltransferase, UPF0 3.1e-09 34.5 0.0 1.4e-08 32.4 0.0 2.0 1 tr|Q5JIX8|Q5JIX8_THEKO N5-glutamine methyltransferase, HemK 5.2e-08 30.6 0.0 1.4e-07 29.2 0.0 1.8 1 tr|Q5JID5|Q5JID5_THEKO N2, N2-dimethylguanosine tRNA methylt 8.7e-07 26.6 0.0 2.7e-06 25.1 0.0 1.9 1 tr|Q5JEM0|Q5JEM0_THEKO Predicted N6-adenine-specific DNA met 1.6e-06 25.8 0.0 2.9e-06 25.0 0.0 1.4 1 tr|Q5JJF0|Q5JJF0_THEKO Ribosomal RNA small subunit methyltra 9.7e-06 23.3 0.0 2e-05 22.3 0.0 1.6 1 tr|Q5JH62|Q5JH62_THEKO Uncharacterized protein OS=Thermococc 3.9e-05 21.3 0.0 6e-05 20.7 0.0 1.3 1 tr|Q5JEE1|Q5JEE1_THEKO Protein-L-isoaspartate O-methyltransf 4.3e-05 21.2 0.0 0.00047 17.9 0.0 2.3 2 tr|Q5JH73|Q5JH73_THEKO Uncharacterized protein OS=Thermococc 4.6e-05 21.1 0.0 0.00011 19.9 0.0 1.7 1 tr|Q5JGS7|Q5JGS7_THEKO tRNA (1-methyladenosine) methyltransf 5.2e-05 20.9 0.0 0.00011 20.0 0.0 1.5 1 tr|Q5JDP7|Q5JDP7_THEKO Predicted DNA methylase OS=Thermococc 0.00013 19.7 0.0 0.00091 17.0 0.0 2.1 2 tr|Q5JJ79|Q5JJ79_THEKO Predicted SAM-dependent methyltransfe 0.00018 19.2 0.0 0.00057 17.6 0.0 1.8 1 sp|Q5JI54|RSMA_THEKO Probable ribosomal RNA small subunit 0.00046 17.9 0.0 0.0021 15.8 0.0 2.2 1 tr|Q5JDB4|Q5JDB4_THEKO tRNA/rRNA cytosine-C5-methylase, NOL1 0.00069 17.3 0.0 0.0078 14.0 0.0 2.3 2 tr|Q5JHE3|Q5JHE3_THEKO Short-chain alcohol dehydrogenase OS= 0.0011 16.7 0.0 0.0031 15.2 0.0 1.9 1 tr|Q5JE68|Q5JE68_THEKO 23S rRNA (Uracil-5-)-methyltransferas 0.0019 15.9 0.0 0.0062 14.3 0.0 1.9 1 tr|Q5JHF7|Q5JHF7_THEKO 23S rRNA (Uracil-5-)-methyltransferas 0.0022 15.7 0.0 0.013 13.2 0.0 2.2 1 tr|Q5JF97|Q5JF97_THEKO Chemotaxis protein methyltransferase 0.0024 15.6 0.0 0.019 12.8 0.0 2.1 2 tr|Q5JEC3|Q5JEC3_THEKO Predicted DNA methylase OS=Thermococc 0.003 15.3 0.0 0.41 8.5 0.0 2.6 2 tr|Q5JDP5|Q5JDP5_THEKO tRNA/rRNA cytosine-C5-methylase, NOL1 0.0084 13.9 0.0 0.024 12.4 0.0 1.9 1 tr|Q5JJ78|Q5JJ78_THEKO Probable tRNA/rRNA methyltransferase ------ inclusion threshold ------ 0.02 12.7 0.0 0.056 11.2 0.0 1.8 1 tr|Q5JEW7|Q5JEW7_THEKO tRNA/rRNA cytosine-C5-methylase, NOL1 Domain annotation for each sequence (and alignments): >> tr|Q5JG68|Q5JG68_THEKO SAM-dependent methyltransferase, UbiE/COQ5 family OS=Thermococcus kodakarensis (strain ATCC B # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 92.3 0.0 3.4e-29 2.8e-27 1 95 [] 40 134 .. 40 134 .. 0.98 Alignments for each domain: == domain 1 score: 92.3 bits; conditional E-value: 3.4e-29 EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-.EEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHH CS Methyltransf_11 1 LdvGcGtGrlaealakrgarvvgvDlspemlklakekaseegl.vefvvadaeklpfpdnsfDlvvssevlhhvedpekalkeiaRv 86 L++G+GtG+ ++++ + + +++++D s++ml++ak++a+e g+ v+f va+ae+lpfpd+ fD vvss+v+++v++pe+a++ei+Rv tr|Q5JG68|Q5JG68_THEKO 40 LEIGVGTGKTLRYYPQDV-ELYAIDGSEKMLEMAKKRAKELGMdVKFKVAEAESLPFPDDFFDTVVSSFVFCTVPEPERAIEEIKRV 125 89*************777.******************************************************************** PP EEEEEEEEE CS Methyltransf_11 87 LkpgGllvi 95 Lkp+G+ ++ tr|Q5JG68|Q5JG68_THEKO 126 LKPDGMAIF 134 *****9986 PP >> tr|Q5JHQ2|Q5JHQ2_THEKO SAM-dependent methyltransferase, UbiE/COQ5 family OS=Thermococcus kodakarensis (strain ATCC B # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 83.8 0.0 1.6e-26 1.3e-24 1 95 [] 43 140 .. 43 140 .. 0.98 Alignments for each domain: == domain 1 score: 83.8 bits; conditional E-value: 1.6e-26 EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-.EEETTEECCCTSS-TT-EEEEEEES-CCC-..CCHHHHHHHHH CS Methyltransf_11 1 LdvGcGtGrlaealakrgarvvgvDlspemlklakekaseegl.vefvvadaeklpfpdnsfDlvvssevlhhv..edpekalkeia 84 Ld++cG G ++ l++ g +vvg+D s ml+ a+e a+e++ vef+++da++lpf+++sfD v+ +l h+ +d++k++ke a tr|Q5JHQ2|Q5JHQ2_THEKO 43 LDLACGVGGFSFLLEDLGFEVVGLDNSRFMLEKAREFAKEKESrVEFIEGDARELPFENDSFDYVLFIDSLVHFepQDLAKVFKETA 129 8***************************************999*******************************999********** PP HHEEEEEEEEE CS Methyltransf_11 85 RvLkpgGllvi 95 RvLkpgG++++ tr|Q5JHQ2|Q5JHQ2_THEKO 130 RVLKPGGKFIL 140 ********985 PP >> tr|Q5JFQ4|Q5JFQ4_THEKO SAM-dependent methyltransferase, UbiE/COQ5 family OS=Thermococcus kodakarensis (strain ATCC B # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 72.0 0.0 7.5e-23 6.1e-21 1 95 [] 44 134 .. 44 134 .. 0.97 Alignments for each domain: == domain 1 score: 72.0 bits; conditional E-value: 7.5e-23 EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-EEETTEECCCTSS-TT-EEEEEEES-CCC-..CCHHHHHHHHHH CS Methyltransf_11 1 LdvGcGtGrlaealakrgarvvgvDlspemlklakekaseeglvefvvadaeklpfpdnsfDlvvssevlhhv..edpekalkeiaR 85 +dvGcGtG +++ l ++r++gv++s+ m+k+ +ek e+ + + + ++p+p++s D vvs+ ++hhv e+ +a++e+ R tr|Q5JFQ4|Q5JFQ4_THEKO 44 VDVGCGTGNILRFLR--CERYIGVEPSEGMRKAFREKWGFEP----IDGHFLEIPLPEGSADTVVSTYAFHHVpdEEKGEAIREMLR 124 69*************..*********************9999....9**************************998999******** PP HEEEEEEEEE CS Methyltransf_11 86 vLkpgGllvi 95 vL+pgG+l+i tr|Q5JFQ4|Q5JFQ4_THEKO 125 VLRPGGILII 134 ********96 PP >> tr|Q5JG60|Q5JG60_THEKO SAM-dependent methyltransferase, UbiE/COQ5 family OS=Thermococcus kodakarensis (strain ATCC B # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 69.5 0.0 4.6e-22 3.8e-20 2 95 .] 44 128 .. 43 128 .. 0.94 Alignments for each domain: == domain 1 score: 69.5 bits; conditional E-value: 4.6e-22 EET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-EEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEE CS Methyltransf_11 2 dvGcGtGrlaealakrgarvvgvDlspemlklakekaseeglvefvvadaeklpfpdnsfDlvvssevlhhvedpekalkeiaRvLk 88 ++G+GtGr+a++l +gv++s++m ++a++++ e+++++ae+lpf+++s+D ++ ++++v+dpekalke++RvLk tr|Q5JG60|Q5JG60_THEKO 44 EIGVGTGRFAAPLG----IKLGVEPSKAMAEIARTRGI-----EVIEGTAENLPFEEDSMDYLLMVTTICFVDDPEKALKEAYRVLK 121 79************....6789***********88885.....559***************************************** PP EEEEEEE CS Methyltransf_11 89 pgGllvi 95 pgG l+i tr|Q5JG60|Q5JG60_THEKO 122 PGGALII 128 ****996 PP >> tr|Q5JGN8|Q5JGN8_THEKO SAM-dependent methyltransferase, UbiE/COQ5 family OS=Thermococcus kodakarensis (strain ATCC B # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 68.1 0.0 1.2e-21 9.8e-20 1 94 [. 46 142 .. 46 143 .. 0.96 Alignments for each domain: == domain 1 score: 68.1 bits; conditional E-value: 1.2e-21 EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-.EEETTEECCCTSS-TT-EEEEEEES.-CCC-..CCHHHHHHHH CS Methyltransf_11 1 LdvGcGtGrlaealakrgarvvgvDlspemlklakekaseegl.vefvvadaeklpfpdnsfDlvvsse.vlhhv..edpekalkei 83 Ld++cGtG+ + +la+rg++v+g+Dl +eml++a++ka+ +gl v+f++++a ++ f++ fD+v++++ +++++ +++++ + tr|Q5JGN8|Q5JGN8_THEKO 46 LDLACGTGIPTLELAERGYEVLGLDLHEEMLRVARRKAEARGLnVKFIRGNALDISFEE-EFDAVTMFFsSIMYFddSAIRELFNSV 131 8********************************************************99.9*****998688999777899****** PP HHHEEEEEEEE CS Methyltransf_11 84 aRvLkpgGllv 94 +R L+pgG+++ tr|Q5JGN8|Q5JGN8_THEKO 132 RRTLRPGGVFI 142 *********98 PP >> tr|Q5JFS6|Q5JFS6_THEKO Predicted SAM-dependent methyltransferase OS=Thermococcus kodakarensis (strain ATCC BAA-918 / # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 57.5 0.1 2.4e-18 2e-16 1 95 [] 62 157 .. 62 157 .. 0.95 Alignments for each domain: == domain 1 score: 57.5 bits; conditional E-value: 2.4e-18 EEET-TTSHHHHHHH.HTT.SEEEEEES-HHHHHHHHHHCCHHT-.EEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHH CS Methyltransf_11 1 LdvGcGtGrlaeala.krg.arvvgvDlspemlklakekaseegl.vefvvadaeklpfpdnsfDlvvssevlhhvedpekalkeia 84 LdvGcGtG l+ ++a k+g + vvgvD +e+++++++ + + +fv++++ ++ + ++fD vv s vlh + +pe +l+ + tr|Q5JFS6|Q5JFS6_THEKO 62 LDVGCGTGVLTFKMAlKNGvEMVVGVDRKEEVIEFCNRLGDRVTKnAKFVQGNFLEMGLD-EKFDSVVFSYVLHDF-EPEPFLERAL 146 8**************88889****************99999998899**********985.5**************.6********* PP HHEEEEEEEEE CS Methyltransf_11 85 RvLkpgGllvi 95 vL+ gG++++ tr|Q5JFS6|Q5JFS6_THEKO 147 EVLEEGGRVIV 157 ********986 PP >> tr|Q5JED8|Q5JED8_THEKO SAM-dependent methyltransferase, UbiE/COQ5 family OS=Thermococcus kodakarensis (strain ATCC B # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.7 0.0 1.3 1.1e+02 52 86 .. 76 111 .. 52 113 .. 0.75 2 ! 42.5 0.0 1.2e-13 1e-11 1 95 [] 164 260 .. 164 260 .. 0.86 Alignments for each domain: == domain 1 score: 0.7 bits; conditional E-value: 1.3 CCTSS-TT-EEEEEEES-CCC-.CCHHHHHHHHHHH CS Methyltransf_11 52 eklpfpdnsfDlvvssevlhhv.edpekalkeiaRv 86 ++ +++ s lvv+ e + d++++l+ei+++ tr|Q5JED8|Q5JED8_THEKO 76 DHIELAEFSHNLVVAAERYGALvSDWASVLEEIYKM 111 4556666677777777777666799*******9976 PP == domain 2 score: 42.5 bits; conditional E-value: 1.2e-13 EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-.EEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHH CS Methyltransf_11 1 LdvGcGtGrlaealakrg..arvvgvDlspemlklakekaseegl.vefvvadaeklpfpdnsfDlvvssevlhhvedpekalkeia 84 Ld+GcG+ + + g + ++g+D+s ++l++a++++ +e l v + + da+ + p ns+D+v++s+vl++++++++a+k++ tr|Q5JED8|Q5JED8_THEKO 164 LDIGCGSVSPSYFGRLVGynGFYLGLDYSYALLDIARARIAGEALpVVLKEIDAT-IIRPVNSYDVVIMSFVLEYIQNRKRAIKNAL 249 8****9877666555444669***********************87655666666.456779************************* PP HHEEEEEEEEE CS Methyltransf_11 85 RvLkpgGllvi 95 L+ gG+lvi tr|Q5JED8|Q5JED8_THEKO 250 EGLREGGKLVI 260 ********996 PP >> tr|Q5JDR0|Q5JDR0_THEKO SAM-dependent methyltransferase, UPF0020 family OS=Thermococcus kodakarensis (strain ATCC BAA # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 36.3 0.0 1e-11 8.5e-10 1 94 [. 132 235 .. 132 236 .. 0.88 Alignments for each domain: == domain 1 score: 36.3 bits; conditional E-value: 1e-11 EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-.....EEETTEECCCT..SS-TT-EEEEEEES....-CCC-CCH CS Methyltransf_11 1 LdvGcGtGrlaealakrgarvvgvDlspemlklakekaseegl.....vefvvadaekl..pfpdnsfDlvvsse....vlhhvedp 76 Ld +G G+ a + krga v++++ +p+++++a+ + ++l ++++++da ++ +f+ +sfD+++ h+ tr|Q5JDR0|Q5JDR0_THEKO 132 LDTCMGLGYTAIEASKRGAYVITIEKDPNVIEIARINPWSRELftggkIQVIQGDAFEVvkKFKQASFDVIIHDPprfsLAGHL-YS 217 6777899***************************99999999999999999******96567**********976444344455.79 PP HHHHHHHHHHEEEEEEEE CS Methyltransf_11 77 ekalkeiaRvLkpgGllv 94 e++ +e+ R+LkpgG+l+ tr|Q5JDR0|Q5JDR0_THEKO 218 EEFYRELFRILKPGGRLF 235 ***************997 PP >> tr|Q5JIX8|Q5JIX8_THEKO N5-glutamine methyltransferase, HemK family OS=Thermococcus kodakarensis (strain ATCC BAA-918 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.4 0.0 1.7e-10 1.4e-08 1 92 [. 39 147 .. 39 150 .. 0.74 Alignments for each domain: == domain 1 score: 32.4 bits; conditional E-value: 1.7e-10 EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-..EEETTEECCCTSS-TT-EEEEEEES......-CCC-C..... CS Methyltransf_11 1 LdvGcGtGrlaealakrgarvvgvDlspemlklakekaseegl..vefvvadaeklpfpdnsfDlvvsse......vlhhve..... 74 Ld+G GtG++a la++++ v+gvD++p +++la+e+a+ +g+ vef+ +d+ + ++ fD+++ ++ e tr|Q5JIX8|Q5JIX8_THEKO 39 LDMGTGTGIIALLLARKARWVLGVDINPLAVELARENARINGIinVEFRLSDLFE--NVSGEFDVITFNApylpgeP----Eepidl 119 8*****************************************9888888888886..56779***998874333330....133333 PP ..........CHHHHHHHHHHHEEEEEE CS Methyltransf_11 75 ..........dpekalkeiaRvLkpgGl 92 ++++++e+ LkpgG+ tr|Q5JIX8|Q5JIX8_THEKO 120 alvggetgreVLDRFIDEVPCYLKPGGV 147 3333334443666666666666666665 PP >> tr|Q5JID5|Q5JID5_THEKO N2, N2-dimethylguanosine tRNA methyltransferase OS=Thermococcus kodakarensis (strain ATCC BAA # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.2 0.0 1.7e-09 1.4e-07 5 95 .] 188 291 .. 184 291 .. 0.84 Alignments for each domain: == domain 1 score: 29.2 bits; conditional E-value: 1.7e-09 -TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-..EEETTEECCCTS..S-TT-EEEEEEES...-CCC-......CCHHH CS Methyltransf_11 5 cGtGrlaealakrgarvvgvDlspemlklakekaseegl..vefvvadaeklp..fpdnsfDlvvsse...vlhhv......edpek 78 +G+G ++ + g rv+gvD+ pem++ a+++ + g+ ++ +da++l fpd++f +v + ++ e +k tr|Q5JID5|Q5JID5_THEKO 188 MGAGGILIEAGLLGLRVYGVDIRPEMVEGAETNLKHYGVrdYTLKLGDATRLEdlFPDKKFEAVATDPpygTAATLagrkrdELYRK 274 566666777777889*********************99999888********668*********9977555555556777766899* PP HHHHHHHHEEEEEEEEE CS Methyltransf_11 79 alkeiaRvLkpgGllvi 95 al+ i+ vL+ gG+l+i tr|Q5JID5|Q5JID5_THEKO 275 ALRSIYNVLEDGGRLAI 291 **************986 PP >> tr|Q5JEM0|Q5JEM0_THEKO Predicted N6-adenine-specific DNA methylase OS=Thermococcus kodakarensis (strain ATCC BAA-918 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.1 0.0 3.3e-08 2.7e-06 5 94 .. 226 328 .. 222 329 .. 0.86 Alignments for each domain: == domain 1 score: 25.1 bits; conditional E-value: 3.3e-08 -TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-...EEETTEECCCTSS-TT-EEEEEEES........-CCC-...CC CS Methyltransf_11 5 cGtGrlaealakrg..arvvgvDlspemlklakekaseegl...vefvvadaeklpfpdnsfDlvvsse........vlhhv...ed 75 cG+G ++ +la rg +r++g++ + ++ a+++a +g+ +ef+++da+kl +s+D+ vs+ tr|Q5JEM0|Q5JEM0_THEKO 226 CGSGTILIELALRGykGRIIGLEKYRKHIRGAEMNALSAGVldkIEFIQGDATKLSQYVESVDFAVSNLpyglkigrK---SmipRL 309 ***********88889***************************************87788********9765554331...034446 PP HHHHHHHHHHHEEEEEEEE CS Methyltransf_11 76 pekalkeiaRvLkpgGllv 94 +++++e+ +vL++ G+++ tr|Q5JEM0|Q5JEM0_THEKO 310 YMAFFSELSKVLEKRGVFI 328 7999999999999999987 PP >> tr|Q5JJF0|Q5JJF0_THEKO Ribosomal RNA small subunit methyltransferase C OS=Thermococcus kodakarensis (strain ATCC BAA # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.0 0.0 3.5e-08 2.9e-06 1 93 [. 61 155 .. 61 157 .. 0.92 Alignments for each domain: == domain 1 score: 25.0 bits; conditional E-value: 3.5e-08 EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-..EEETTEECCCTSS-TT-EEEEEEES-CCC-.CCHHHHHHHHH CS Methyltransf_11 1 LdvGcGtGrlaealakrgarvvgvDlspemlklakekaseegl..vefvvadaeklpfpdnsfDlvvssevlhhv.edpekalkeia 84 Ld+GcG G + + + vv +D++ +++ +ak++ + +g+ e++ +++ + p++ ++fD ++ + +h e +++++ ++ tr|Q5JJF0|Q5JJF0_THEKO 61 LDLGCGYGPIGIVASRFVDYVVMTDVNRRAVSIAKKNLKINGVrnAEVRWGSLYE-PVAGEKFDSIITNPPVHAGkEVLREIVINAP 146 8*******9999999888*********************9998776667788887.**************99999889999****** PP HHEEEEEEE CS Methyltransf_11 85 RvLkpgGll 93 R L gG+l tr|Q5JJF0|Q5JJF0_THEKO 147 RHLNDGGYL 155 *******98 PP >> tr|Q5JH62|Q5JH62_THEKO Uncharacterized protein OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.3 0.0 2.4e-07 2e-05 1 88 [. 52 144 .. 52 151 .. 0.68 Alignments for each domain: == domain 1 score: 22.3 bits; conditional E-value: 2.4e-07 EEET-T.TSHHHHHHHHTT...SEEEEEES-HHHHHHHHHHCCHHT-...EEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHH CS Methyltransf_11 1 LdvGcG.tGrlaealakrg...arvvgvDlspemlklakekaseegl...vefvvadaeklpfpdnsfDlvvssevlhhvedpekal 80 L++GcG + + +la + +rvv+vD + + + +e +s +gl + ++ da++lpfp + fDl v+ + + +++ e ++ tr|Q5JH62|Q5JH62_THEKO 52 LEIGCGaHAITTVPLAYLVdetGRVVAVDKAR-WH-FFEEITSVAGLkhrIIPMKLDARELPFPFKAFDLAVLVHGIRSLKNEETIV 136 89****66777788883335558******432.22.33333333333333223899*******************999996666666 PP HHHHHHEE CS Methyltransf_11 81 keiaRvLk 88 k i +L+ tr|Q5JH62|Q5JH62_THEKO 137 KVISEMLR 144 66655554 PP >> tr|Q5JEE1|Q5JEE1_THEKO Protein-L-isoaspartate O-methyltransferase OS=Thermococcus kodakarensis (strain ATCC BAA-918 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.7 0.0 7.4e-07 6e-05 1 57 [. 82 140 .. 82 158 .. 0.88 Alignments for each domain: == domain 1 score: 20.7 bits; conditional E-value: 7.4e-07 EEET-TTSHHHHHHHHTT.SEEEEEES-HHHHHHHHHHCCHHT-..EEETTEECCCTSS- CS Methyltransf_11 1 LdvGcGtGrlaealakrg.arvvgvDlspemlklakekaseegl..vefvvadaeklpfp 57 L++G G+G +a+ + + + ++v++++ pe++++a+++ +++g+ v ++ +d +k fp tr|Q5JEE1|Q5JEE1_THEKO 82 LEIGTGSGWNAALISELVkTDVYTIERIPELVEFARRNLERAGVknVHVILGDGTK-GFP 140 89*************999*************************9999999999998.444 PP >> tr|Q5JH73|Q5JH73_THEKO Uncharacterized protein OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.9 0.0 5.7e-06 0.00047 2 52 .. 89 141 .. 88 156 .. 0.87 2 ? 0.5 0.0 1.6 1.3e+02 66 90 .. 277 302 .. 252 303 .. 0.83 Alignments for each domain: == domain 1 score: 17.9 bits; conditional E-value: 5.7e-06 EET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-..EEETTEECC CS Methyltransf_11 2 dvGcGtGrlaealakrgarvvgvDlspemlklakekaseegl..vefvvadae 52 dv cG G+ + +a +++r +g+D++p +++a+++a++ g+ +ef+ ad tr|Q5JH73|Q5JH73_THEKO 89 DVSCGIGIQLIFYAMKVERAYGIDIDPLKIEFARRNAEKYGVsnIEFINADSL 141 99************999**********************99999888888855 PP == domain 2 score: 0.5 bits; conditional E-value: 1.6 EES-CCC-.CCHHHHHHHHHHHEEEE CS Methyltransf_11 66 ssevlhhv.edpekalkeiaRvLkpg 90 ++e +h + + + +l+e +RvL g tr|Q5JH73|Q5JH73_THEKO 277 INELFHRLpVEARMLLREKRRVLATG 302 578888897789999*******9865 PP >> tr|Q5JGS7|Q5JGS7_THEKO tRNA (1-methyladenosine) methyltransferase OS=Thermococcus kodakarensis (strain ATCC BAA-918 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.9 0.0 1.3e-06 0.00011 2 94 .. 99 191 .. 98 192 .. 0.89 Alignments for each domain: == domain 1 score: 19.9 bits; conditional E-value: 1.3e-06 EET-TTSHHHHHHHHTT...SEEEEEES-HHHHHHHHHHCCHHT-...EEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHH CS Methyltransf_11 2 dvGcGtGrlaealakrg...arvvgvDlspemlklakekaseegl...vefvvadaeklpfpdnsfDlvvssevlhhvedpekalke 82 ++G+G+G+l+ la+ + ++v+ ++ + + ++ak++++ +g+ v + ++ + + ++ D +v+ +++pe +l tr|Q5JGS7|Q5JGS7_THEKO 99 EAGAGSGALTIFLANAVgptGKVISYEVRKDFYEIAKKNVELAGFsdrVVLKNKSIYD-GIDEKEADHIVLD-----LPQPENVLPH 179 78************776799************************98776566666666.8999999999887.....69******** PP HHHHEEEEEEEE CS Methyltransf_11 83 iaRvLkpgGllv 94 ++ vL+pgG++v tr|Q5JGS7|Q5JGS7_THEKO 180 AVDVLRPGGYFV 191 **********98 PP >> tr|Q5JDP7|Q5JDP7_THEKO Predicted DNA methylase OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.0 0.0 1.3e-06 0.00011 2 64 .. 53 116 .. 52 128 .. 0.87 Alignments for each domain: == domain 1 score: 20.0 bits; conditional E-value: 1.3e-06 EET-TTSHHHHHHHHTT.SEEEEEES-HHHHHHHHHHCCHHT-...EEETTEECCCTSS-TT-EEEE CS Methyltransf_11 2 dvGcGtGrlaealakrg.arvvgvDlspemlklakekaseegl...vefvvadaeklpfpdnsfDlv 64 d+G+GtG l g ++v++v+ ++e+l++a+e+a+ g+ +efv ad++++ + +D v tr|Q5JDP7|Q5JDP7_THEKO 53 DLGAGTGVLGIGAVLLGaENVYAVERDKEALEIARENARSLGVedkIEFVNADVSEFSV---NVDTV 116 899999999888888888************************************98433...44555 PP >> tr|Q5JJ79|Q5JJ79_THEKO Predicted SAM-dependent methyltransferase, DUF890 family OS=Thermococcus kodakarensis (strain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.0 0.0 1.1e-05 0.00091 1 66 [. 86 157 .. 86 170 .. 0.80 2 ? 0.1 0.0 2 1.7e+02 78 94 .. 188 204 .. 175 205 .. 0.87 Alignments for each domain: == domain 1 score: 17.0 bits; conditional E-value: 1.1e-05 EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-....EEETTEECCCTSS-TT-EEEEEE CS Methyltransf_11 1 LdvGcGtGrlaealakrg..arvvgvDlspemlklakekaseegl....vefvvadaeklpfpdnsfDlvvs 66 L++G G ++++ +a+r ++v++++l++e+ ++ak++++++g ++ + ++ + + + fD+++s tr|Q5JJ79|Q5JJ79_THEKO 86 LEIGTGHTAMMALMAERLfnCDVTATELDEEFFEYAKRNIEKNGAnvkpIKSNGGIIRGVVPKGERFDVIFS 157 89****99999999977779***********************99844433333334444334578999887 PP == domain 2 score: 0.1 bits; conditional E-value: 2 HHHHHHHHHEEEEEEEE CS Methyltransf_11 78 kalkeiaRvLkpgGllv 94 ++++e+ L pgG+++ tr|Q5JJ79|Q5JJ79_THEKO 188 RLIEEALEYLNPGGKVA 204 788999999****9986 PP >> sp|Q5JI54|RSMA_THEKO Probable ribosomal RNA small subunit methyltransferase A OS=Thermococcus kodakarensis (strain A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.6 0.0 6.9e-06 0.00057 1 58 [. 47 103 .. 47 111 .. 0.93 Alignments for each domain: == domain 1 score: 17.6 bits; conditional E-value: 6.9e-06 EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-EEETTEECCCTSS-T CS Methyltransf_11 1 LdvGcGtGrlaealakrgarvvgvDlspemlklakekaseeglvefvvadaeklpfpd 58 L++G G G l+ +l kr+++v++++ + + +++ +++++ ++ ve++++da k+ p+ sp|Q5JI54|RSMA_THEKO 47 LEIGPGLGVLTDPLSKRAGKVYAIEKDCRIVEILRREYNWPN-VEIIEGDALKVEWPE 103 89**************************************99.9*******9987765 PP >> tr|Q5JDB4|Q5JDB4_THEKO tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family, fused to N-terminal NusB regulator dom # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.8 0.0 2.6e-05 0.0021 2 66 .. 267 335 .. 266 348 .. 0.81 Alignments for each domain: == domain 1 score: 15.8 bits; conditional E-value: 2.6e-05 EET-TTSHHHHHHH...HTTSEEEEEES-HHHHHHHHHHCCHHT-..EEETTEECCCTSS-T.T-EEEEEE CS Methyltransf_11 2 dvGcGtGrlaeala...krgarvvgvDlspemlklakekaseegl..vefvvadaeklpfpd.nsfDlvvs 66 d+++ G+ + + a ++ +++v+vD+s l + keka+ g+ v+fv+ad ++ f+d ++fD +++ tr|Q5JDB4|Q5JDB4_THEKO 267 DLAAAPGSKTFHAAalmENKGEIVAVDYSYDRLMRMKEKAKVLGVknVRFVHADGQS--FRDkEKFDKIIL 335 666666666665553225559************99999999999999*********8..999679998875 PP >> tr|Q5JHE3|Q5JHE3_THEKO Short-chain alcohol dehydrogenase OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 123 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.0 0.0 9.5e-05 0.0078 10 53 .. 24 69 .. 17 83 .. 0.86 2 ? 0.8 0.0 1.2 1e+02 28 44 .. 193 211 .. 168 225 .. 0.77 Alignments for each domain: == domain 1 score: 14.0 bits; conditional E-value: 9.5e-05 HHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-..EEETTEECCC CS Methyltransf_11 10 laealakrgarvvgvDlspemlklakekaseegl..vefvvadaek 53 +a+ lak ga+vv + s+e lk+akek++ + v+++vad+++ tr|Q5JHE3|Q5JHE3_THEKO 24 VARVLAKAGADVVLLSRSEENLKRAKEKIRAASDveVSYIVADLTR 69 467788999*********************9998899999999875 PP == domain 2 score: 0.8 bits; conditional E-value: 1.2 HHHHHHHHHHCCHHT-..E CS Methyltransf_11 28 pemlklakekaseegl..v 44 ++m++lak++a++eg tr|Q5JHE3|Q5JHE3_THEKO 193 DRMIRLAKDRAQREGKtvE 211 6899*******99996432 PP >> tr|Q5JE68|Q5JE68_THEKO 23S rRNA (Uracil-5-)-methyltransferase OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JC # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.2 0.0 3.8e-05 0.0031 1 65 [. 286 349 .. 286 381 .. 0.90 Alignments for each domain: == domain 1 score: 15.2 bits; conditional E-value: 3.8e-05 EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-.EEETTEECCCTSS-TT-EEEEE CS Methyltransf_11 1 LdvGcGtGrlaealakrgarvvgvDlspemlklakekaseegl.vefvvadaeklpfpdnsfDlvv 65 Ld+ +G G + +lakr +v g++l+p ++++a+++a+ +++ +f v++ae++p+ + +D vv tr|Q5JE68|Q5JE68_THEKO 286 LDLYAGVGTFGVWLAKRRFQVEGIELNPFAVEIANKNAEINNVdATFKVGRAEETPIGK--YDTVV 349 6777899********9999*********************999*99********99866..77776 PP >> tr|Q5JHF7|Q5JHF7_THEKO 23S rRNA (Uracil-5-)-methyltransferase OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JC # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.3 0.0 7.6e-05 0.0062 1 55 [. 282 337 .. 282 348 .. 0.85 Alignments for each domain: == domain 1 score: 14.3 bits; conditional E-value: 7.6e-05 EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-.EEETTEECCCTS CS Methyltransf_11 1 LdvGcGtGrlaealakrgarvvgvDlspemlklakekaseegl.vefvvadaeklp 55 Ld+ +G G + +lakrg +v g++++p ++++ak++a+ +g+ ef+v++ ++++ tr|Q5JHF7|Q5JHF7_THEKO 282 LDLYSGVGTFGIYLAKRGFKVEGIEINPFAVEMAKKNAQINGVdAEFRVGEDKDVN 337 6777999***********************************99999999988874 PP >> tr|Q5JF97|Q5JF97_THEKO Chemotaxis protein methyltransferase OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.2 0.0 0.00016 0.013 44 95 .] 194 246 .. 111 246 .. 0.81 Alignments for each domain: == domain 1 score: 13.2 bits; conditional E-value: 0.00016 EEETTEECCCTSS-TT-EEEEEEES-CCC-..CCHHHHHHHHHHHEEEEEEEEE CS Methyltransf_11 44 vefvvadaeklpfpdnsfDlvvssevlhhv..edpekalkeiaRvLkpgGllvi 95 vef++ ++ + +p fD++++++vl ++ e +e+++k+++ L+ G+lv+ tr|Q5JF97|Q5JF97_THEKO 194 VEFRHFNLLSDRYPT-GFDMIFIRNVLIYMtkEAQEEVFKKLYNSLEDHGYLVL 246 555555555545555.7*************9999*****************985 PP >> tr|Q5JEC3|Q5JEC3_THEKO Predicted DNA methylase OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.8 0.0 0.00023 0.019 1 66 [. 195 268 .. 195 278 .. 0.85 2 ? 0.1 0.0 2 1.6e+02 78 95 .] 298 315 .. 284 315 .. 0.88 Alignments for each domain: == domain 1 score: 12.8 bits; conditional E-value: 0.00023 EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-.......EEETTEECCCT.SS-TT-EEEEEE CS Methyltransf_11 1 LdvGcGtGrlaealakrgarvvgvDlspemlklakekaseegl.......vefvvadaekl.pfpdnsfDlvvs 66 Ld cG G +++++ +g + +g D ++ +++ ak++ + + v+da+kl + + fD++v tr|Q5JEC3|Q5JEC3_THEKO 195 LDPFCGIGTVVQEFVLQGLTAYGSDRDEGQIRDAKKNLTWLRKefrlknsAHLEVCDARKLkKCFRQRFDAIVT 268 6777******************************9999888877777777666999999996555669999875 PP == domain 2 score: 0.1 bits; conditional E-value: 2 HHHHHHHHHEEEEEEEEE CS Methyltransf_11 78 kalkeiaRvLkpgGllvi 95 ++++ +a vLk +G++v+ tr|Q5JEC3|Q5JEC3_THEKO 298 SVFESFADVLKRNGKVVF 315 57889999******9987 PP >> tr|Q5JDP5|Q5JDP5_THEKO tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family OS=Thermococcus kodakarensis (strain AT # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 8.5 0.0 0.005 0.41 7 65 .. 261 326 .. 255 342 .. 0.78 2 ? 4.1 0.0 0.11 9.1 76 94 .. 359 377 .. 347 378 .. 0.87 Alignments for each domain: == domain 1 score: 8.5 bits; conditional E-value: 0.005 TSHHHHHHHHTT...SEEEEEES-HHHHHHHHHHCCHHT-..EEETTEECCCTS..S-TT-EEEEE CS Methyltransf_11 7 tGrlaealakrg...arvvgvDlspemlklakekaseegl..vefvvadaeklp..fpdnsfDlvv 65 G ++++a+ ++++++D++ + +k+ ke ++ g+ e+++ad ++ p + ++ D v+ tr|Q5JDP5|Q5JDP5_THEKO 261 PGGKTAHMAELMenrGKIYAFDVDSARIKRMKEVLKRTGVeiAEVIKADGRNAPelLGEEIADRVL 326 5555555553333348*******************9999999888999999987667777777665 PP == domain 2 score: 4.1 bits; conditional E-value: 0.11 HHHHHHHHHHHEEEEEEEE CS Methyltransf_11 76 pekalkeiaRvLkpgGllv 94 ++++++ ++++LkpgG+l+ tr|Q5JDP5|Q5JDP5_THEKO 359 QKELMESAWKLLKPGGRLL 377 6789999*********986 PP >> tr|Q5JJ78|Q5JJ78_THEKO Probable tRNA/rRNA methyltransferase OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.4 0.0 0.00029 0.024 7 83 .. 228 314 .. 222 333 .. 0.78 Alignments for each domain: == domain 1 score: 12.4 bits; conditional E-value: 0.00029 TSHHHHHHHHTT.SEEEEEES-HHHHHHHHHHCCHHT-...EEETTEECC....CTSS-TT-EEEEEEES..-CCC-CCHHHHHHHH CS Methyltransf_11 7 tGrlaealakrg.arvvgvDlspemlklakekaseegl...vefvvadae....klpfpdnsfDlvvsse..vlhhvedpekalkei 83 tG +a + a g +vv+vD sp +++++ke+a+ +g+ ++++v++a ++ + ++fD+v++ +++h +d+++ l+ tr|Q5JJ78|Q5JJ78_THEKO 228 TGGFAIHAAVAGaDEVVAVDKSPWAINMVKENAKLNGVedkMKYIVGSAFpvmeEMIKRGEKFDIVILDPpaFVQHEKDLKRGLRAY 314 56666666656679***************99999999999999999999843334556668*****997665888888888877765 PP >> tr|Q5JEW7|Q5JEW7_THEKO tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family, containing RNA-binding PUA domain OS=T # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.2 0.0 0.00068 0.056 8 55 .. 213 262 .. 203 275 .. 0.80 Alignments for each domain: == domain 1 score: 11.2 bits; conditional E-value: 0.00068 SHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-..EEETTEECCCTS CS Methyltransf_11 8 GrlaealakrgarvvgvDlspemlklakekaseegl..vefvvadaeklp 55 ++ ++l+++ ++++++D s + l+ +e+ ++ g+ v+++++da+klp tr|Q5JEW7|Q5JEW7_THEKO 213 TSHIAQLMQNRGEIIAIDKSRNRLRKMEEELKRLGVknVRLIHMDARKLP 262 334444555558*********************9999***********98 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (95 nodes) Target sequences: 2301 (637680 residues searched) Passed MSV filter: 132 (0.0573664); expected 46.0 (0.02) Passed bias filter: 130 (0.0564972); expected 46.0 (0.02) Passed Vit filter: 41 (0.0178183); expected 2.3 (0.001) Passed Fwd filter: 28 (0.0121686); expected 0.0 (1e-05) Initial search space (Z): 2301 [actual number of targets] Domain search space (domZ): 28 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.01 # Mc/sec: 6057.96 // [ok]