# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/Methyltransf_15.hmm.txt # target sequence database: proteomes/Monosiga_brevicollis.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Methyltransf_15 [M=165] Accession: PF09445.9 Description: RNA cap guanine-N2 methyltransferase Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-34 118.1 0.0 1.9e-34 117.8 0.0 1.0 1 tr|A9UR20|A9UR20_MONBE Uncharacterized protein (Fragment) OS 1.7e-06 26.9 0.0 2.2e-06 26.5 0.0 1.4 1 tr|A9UP83|A9UP83_MONBE Uncharacterized protein OS=Monosiga b 0.00018 20.3 0.0 0.00027 19.7 0.0 1.2 1 tr|A9V6A5|A9V6A5_MONBE Predicted protein OS=Monosiga brevico 0.0032 16.3 0.0 0.0046 15.7 0.0 1.2 1 tr|A9UV07|A9UV07_MONBE Predicted protein OS=Monosiga brevico ------ inclusion threshold ------ 0.048 12.4 0.0 0.073 11.8 0.0 1.3 1 tr|A9V6Y8|A9V6Y8_MONBE Methyltransferase OS=Monosiga brevico 0.063 12.0 0.0 1.6 7.4 0.0 2.2 2 tr|A9UU62|A9UU62_MONBE Predicted protein OS=Monosiga brevico Domain annotation for each sequence (and alignments): >> tr|A9UR20|A9UR20_MONBE Uncharacterized protein (Fragment) OS=Monosiga brevicollis OX=81824 GN=2498 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 117.8 0.0 1.3e-37 1.9e-34 3 163 .. 46 203 .. 45 205 .] 0.90 Alignments for each domain: == domain 1 score: 117.8 bits; conditional E-value: 1.3e-37 Methyltransf_15 3 vvlDlfgGaGGnviqfanvfekviaidinlsrlklaqhNaevYgvsdkvtlvlgdvfellaklkleei..kvdlvflSpPwGGpsYk 87 +v+D+f+G G n+iq+a+ ++v aid ++ +l+ a hNa +Ygv+d++++v+gd ++l++l + + +vd vflSpPwGG sY tr|A9UR20|A9UR20_MONBE 46 MVIDAFCGPGANAIQMALAGCQVLAIDLDPVKLEAARHNASIYGVEDQIDFVHGDAVSVLRQLASTNGstRVDAVFLSPPWGGQSYL 132 68***********************************************************9876544339***************8 PP Methyltransf_15 88 k.kekfdlekkleplklekllkesvklskniilfLPrnsdlkqlaaltaevlenaskvkvvklkenglvkallaylg 163 ++ fdl +ep ++++ l ++ l++n+ +fLPr+ ++++ al ++ ++v++ + n +k l++ylg tr|A9UR20|A9UR20_MONBE 133 AaHQPFDL-AVIEP-SVSRTLAAAQGLTRNVGIFLPRKILVQDVLAL----VGAGEHVEIEQNVINEKIKSLTVYLG 203 62567***.66666.6888889999*****************99887....677788******************98 PP >> tr|A9UP83|A9UP83_MONBE Uncharacterized protein OS=Monosiga brevicollis OX=81824 GN=14119 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.5 0.0 1.4e-09 2.2e-06 3 92 .. 52 141 .. 50 211 .. 0.84 Alignments for each domain: == domain 1 score: 26.5 bits; conditional E-value: 1.4e-09 Methyltransf_15 3 vvlDlfgGaGGnviqfanv.fekviaidinlsrlklaqhNaevYgvsdkvtlvlgdvfellaklkleeikvdlvflSpPwGGpsYkk 88 +v+Dl +G+G +i+ a++ ++v a+di+ l +a Na + +d +++vl+d la ++ +vd v++ pP G + tr|A9UP83|A9UP83_MONBE 52 TVVDLGCGCGMLSIACALQgADHVLAVDIDSAALDIALDNAARLELEDDIDFVLADAPWPLALGPGAR-QVDTVVMNPPFGTKHNAG 137 799***************96789*********************************999888755444.48*********9766555 PP Methyltransf_15 89 kekf 92 +++ tr|A9UP83|A9UP83_MONBE 138 LDVL 141 5555 PP >> tr|A9V6A5|A9V6A5_MONBE Predicted protein OS=Monosiga brevicollis OX=81824 GN=10470 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.7 0.0 1.8e-07 0.00027 4 90 .. 245 335 .. 243 372 .. 0.79 Alignments for each domain: == domain 1 score: 19.7 bits; conditional E-value: 1.8e-07 Methyltransf_15 4 vlDlfgGaGGnviqfanvfekviaidinlsrlklaqhNaevYgvsdkvtlvlgdvfe...llaklkleeikvdlvflSpPwGGps.Y 86 +l l++G+G + ++ vf +v +++i+++ ++ a +N e+ +++ t+ + v+ ll++ + e ++d v+l pP G + + tr|A9V6A5|A9V6A5_MONBE 245 LLELYSGSGTYTPAMCSVFAHVLSVEIQRTLVEAARRNLELNHCESRATVHRAPVEFcrrLLRSREHEGRRYDAVLLDPPRDGLDdF 331 6899****************************************999998887765522255555555559*********9997525 PP Methyltransf_15 87 kkke 90 ++ + tr|A9V6A5|A9V6A5_MONBE 332 TRSQ 335 5444 PP >> tr|A9UV07|A9UV07_MONBE Predicted protein OS=Monosiga brevicollis OX=81824 GN=15473 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.7 0.0 3e-06 0.0046 4 60 .. 44 99 .. 41 127 .. 0.78 Alignments for each domain: == domain 1 score: 15.7 bits; conditional E-value: 3e-06 Methyltransf_15 4 vlDlfgGaGGnviqfanvfekviaidinlsrlklaqhNaevYgvsdkvtlvlgdvfe 60 +lD+++G+G +an ++vi+ + +s ++ a+hNae+ g + + g ++ tr|A9UV07|A9UV07_MONBE 44 LLDICSGTGTIGQLYANRVRRVIGFELVESAVEDAKHNAELNGL-TNCSYFAGRAEK 99 79*******99999**************************9865.445555565555 PP >> tr|A9V6Y8|A9V6Y8_MONBE Methyltransferase OS=Monosiga brevicollis OX=81824 GN=33702 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.8 0.0 4.8e-05 0.073 3 60 .. 157 217 .. 155 281 .. 0.84 Alignments for each domain: == domain 1 score: 11.8 bits; conditional E-value: 4.8e-05 Methyltransf_15 3 vvlDlfgGaGGnviqfanv...fekviaidinlsrlklaqhNaevYgvsdkvtlvlgdvfe 60 vlD+ +G GG ++a+ +i in++++ + ++ g s++ lv gd+++ tr|A9V6Y8|A9V6Y8_MONBE 157 RVLDVGCGIGGPLTNIARFegpEVDLTGITINQHQVSRGNTRCKQLGLSHRCRLVRGDFTQ 217 68*********99888886633346799*******************************98 PP >> tr|A9UU62|A9UU62_MONBE Predicted protein OS=Monosiga brevicollis OX=81824 GN=36263 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.0 0.0 0.05 77 9 39 .. 127 157 .. 122 172 .. 0.87 2 ? 7.4 0.0 0.0011 1.6 17 76 .. 578 640 .. 560 645 .. 0.83 Alignments for each domain: == domain 1 score: 2.0 bits; conditional E-value: 0.05 Methyltransf_15 9 gGaGGnviqfanvfekviaidinlsrlklaq 39 + aG nv f kv a+d n +l+l+ tr|A9UU62|A9UU62_MONBE 127 ASAGDNVLDFIIDGAKVTAVDLNACQLALCS 157 679***********************99885 PP == domain 2 score: 7.4 bits; conditional E-value: 0.0011 Methyltransf_15 17 qfanvfekviaidinlsrlklaqhNaevYgvsdkvtlvlgdvfellaklkleei...kvdlvf 76 ++++ f+k++ +di+ s l +a + e+ g sd v+lvl+d+++l k k++ +vdlv tr|A9UU62|A9UU62_MONBE 578 TLKRRFKKIYILDISASLLDVARRRVEAAGLSDVVELVLADFTDLSDKGKSALPapgSVDLVT 640 57788**************************************99888776543344555555 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (165 nodes) Target sequences: 9188 (5511963 residues searched) Passed MSV filter: 173 (0.0188289); expected 183.8 (0.02) Passed bias filter: 156 (0.0169787); expected 183.8 (0.02) Passed Vit filter: 28 (0.00304745); expected 9.2 (0.001) Passed Fwd filter: 6 (0.000653026); expected 0.1 (1e-05) Initial search space (Z): 9188 [actual number of targets] Domain search space (domZ): 6 [number of targets reported over threshold] # CPU time: 0.07u 0.00s 00:00:00.07 Elapsed: 00:00:00.03 # Mc/sec: 30315.80 // [ok]