# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/Methyltransf_15.hmm.txt
# target sequence database: proteomes/Pseudomonas_aeruginosa.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Methyltransf_15 [M=165]
Accession: PF09445.9
Description: RNA cap guanine-N2 methyltransferase
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.8e-11 40.7 0.0 8e-11 40.3 0.0 1.2 1 tr|Q9I6D9|Q9I6D9_PSEAE Uncharacterized protein OS=Pseudomona
2.2e-05 22.6 0.0 0.00066 17.8 0.0 2.3 2 sp|Q9HZG0|RLMKL_PSEAE Ribosomal RNA large subunit methyltra
5.8e-05 21.2 0.0 8e-05 20.7 0.0 1.2 1 tr|Q9HY94|Q9HY94_PSEAE Uncharacterized protein OS=Pseudomona
0.0014 16.7 0.0 0.0021 16.1 0.0 1.2 1 sp|Q9I347|PRMB_PSEAE 50S ribosomal protein L3 glutamine me
0.0048 15.0 0.0 0.0057 14.7 0.0 1.1 1 tr|Q9I281|Q9I281_PSEAE Uncharacterized protein OS=Pseudomona
0.0051 14.9 0.0 0.0071 14.4 0.0 1.2 1 tr|Q9HTB1|Q9HTB1_PSEAE Uncharacterized protein OS=Pseudomona
------ inclusion threshold ------
0.032 12.3 0.0 0.048 11.7 0.0 1.2 1 tr|Q9I1T6|Q9I1T6_PSEAE Uncharacterized protein OS=Pseudomona
0.045 11.8 0.0 0.066 11.3 0.0 1.2 1 tr|Q9HT28|Q9HT28_PSEAE Uncharacterized protein OS=Pseudomona
0.073 11.1 0.0 0.21 9.6 0.0 1.6 2 sp|Q9HV78|TRMA_PSEAE tRNA/tmRNA (uracil-C(5))-methyltransf
Domain annotation for each sequence (and alignments):
>> tr|Q9I6D9|Q9I6D9_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 40.3 0.0 1.3e-13 8e-11 3 123 .. 223 345 .. 221 381 .. 0.85
Alignments for each domain:
== domain 1 score: 40.3 bits; conditional E-value: 1.3e-13
Methyltransf_15 3 vvlDlfgGaGGnviqfanv.fekviaidinlsrlklaqhNaevYgvsdkvtlvlgdvfellaklkleeikvdlvflSpPwGGpsYkk 88
vlDlf+ GG iq a ++v+++d + l +++Na + gv++kv +v gdvfe+l++lk + ++d+v++ pP k+
tr|Q9I6D9|Q9I6D9_PSEAE 223 RVLDLFSYIGGWGIQAAAFgASEVMCVDASAFALDGVERNAALNGVAEKVACVEGDVFEALRELKAADERFDVVIADPPAFIKRKKD 309
79*************99985578********************************************************87666666 PP
Methyltransf_15 89 kekfdlek.kleplklekllkesvklskniilfLPr 123
++ + + +l++ ++ l k + +s ++LP
tr|Q9I6D9|Q9I6D9_PSEAE 310 LKNGEAAYrRLNEQAMRLLSKDGILVSASCSMHLPE 345
666666665667777776777777777777777775 PP
>> sp|Q9HZG0|RLMKL_PSEAE Ribosomal RNA large subunit methyltransferase K/L OS=Pseudomonas aeruginosa (strain ATCC 15692
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 2.3 0.0 0.062 38 25 82 .. 265 320 .. 258 324 .. 0.90
2 ! 17.8 0.0 1.1e-06 0.00066 4 96 .. 568 658 .. 565 700 .. 0.86
Alignments for each domain:
== domain 1 score: 2.3 bits; conditional E-value: 0.062
Methyltransf_15 25 viaidinlsrlklaqhNaevYgvsdkvtlvlgdvfellaklkleeikvdlvflSpPwG 82
+ + + +++ ++ a +N e gv+d v++ +g++ + + ++++ lv++ pP G
sp|Q9HZG0|RLMKL_PSEAE 265 IRGYEADPRLIQPACNNIERAGVADWVKIYQGELATFEPRPDKGQT--GLVICNPPYG 320
6788999999999*********************999888888888..9*******98 PP
== domain 2 score: 17.8 bits; conditional E-value: 1.1e-06
Methyltransf_15 4 vlDlfgGaGGnviqfanv.fekviaidinlsrlklaqhNaevYgvsdkvtlvlgdvfellaklkleeikvdlvflSpPwGGpsYkkke 90
+l lf+ + +++ a+ +++ ++d +++ l a +N + g sdk lv+gdv+e l++ + +++l+f+ pP+ s + +
sp|Q9HZG0|RLMKL_PSEAE 568 FLNLFCYTATATVHAARGgARSTTSVDLSKTYLDWARRNLSLNGFSDKQRLVHGDVMEWLRE---DDGQYELIFIDPPTFSNSKRMEG 652
67788888888888888745689**********************************99987...455569********999999999 PP
Methyltransf_15 91 kfdlek 96
+fd+++
sp|Q9HZG0|RLMKL_PSEAE 653 VFDVQR 658
999966 PP
>> tr|Q9HY94|Q9HY94_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 20.7 0.0 1.3e-07 8e-05 4 61 .. 180 239 .. 177 290 .. 0.87
Alignments for each domain:
== domain 1 score: 20.7 bits; conditional E-value: 1.3e-07
Methyltransf_15 4 vlDlfgGaGGnviqfanvfe..kviaidinlsrlklaqhNaevYgvsdkvtlvlgdvfel 61
vlD +G+G +i +a+ f+ +v+++d ++ a Nae+ gv d+v + + d l
tr|Q9HY94|Q9HY94_PSEAE 180 VLDFGCGSGLAAIMMAKAFPeaQVYGCDFHAPSIERARANAEAAGVGDRVRFEVSDSDAL 239
89****************96337*****************************99997653 PP
>> sp|Q9I347|PRMB_PSEAE 50S ribosomal protein L3 glutamine methyltransferase OS=Pseudomonas aeruginosa (strain ATCC 156
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.1 0.0 3.4e-06 0.0021 3 76 .. 128 198 .. 127 210 .. 0.82
Alignments for each domain:
== domain 1 score: 16.1 bits; conditional E-value: 3.4e-06
Methyltransf_15 3 vvlDlfgGaGGnviqfanvfe..kviaidinlsrlklaqhNaevYgvsdkvtlvlgdvfellaklkleeikvdlvf 76
+lDl++G+G i+ a fe +v+ d +++ l++a+ N e + ++v +v+gd f l ++ dl++
sp|Q9I347|PRMB_PSEAE 128 RILDLCTGSGCIGIACAYAFEqaEVVLADLSFDALEVANVNIERHDLGERVYTVQGDGFAGLPGQRF-----DLIV 198
58********877777777652268999*****************************9988777554.....4444 PP
>> tr|Q9I281|Q9I281_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.7 0.0 9.2e-06 0.0057 4 60 .. 44 102 .. 41 146 .. 0.87
Alignments for each domain:
== domain 1 score: 14.7 bits; conditional E-value: 9.2e-06
Methyltransf_15 4 vlDlfgGaGGnviqfanv...fekviaidinlsrlklaqhNaevYgvsdkvtlvlgdvfe 60
+l + +GaGG+ ++a + + +a d + + l+la + + g ++++l +gdv
tr|Q9I281|Q9I281_PSEAE 44 LLSVGCGAGGELAELAGLrpgW-RFVAADLSADMLALARQRCARLGLLERIELHCGDVAG 102
67889***********988856.999*******************************975 PP
>> tr|Q9HTB1|Q9HTB1_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.4 0.0 1.1e-05 0.0071 3 39 .. 62 98 .. 60 117 .. 0.93
Alignments for each domain:
== domain 1 score: 14.4 bits; conditional E-value: 1.1e-05
Methyltransf_15 3 vvlDlfgGaGGnviqfanvfekviaidinlsrlklaq 39
+vlD+ +G GGnv a+ ++i di+ ++++ +
tr|Q9HTB1|Q9HTB1_PSEAE 62 TVLDVGCGDGGNVHFCAMRGARIIIADIDAEKIARTR 98
69*******************************9875 PP
>> tr|Q9I1T6|Q9I1T6_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.7 0.0 7.7e-05 0.048 4 56 .. 140 193 .. 137 212 .. 0.78
Alignments for each domain:
== domain 1 score: 11.7 bits; conditional E-value: 7.7e-05
Methyltransf_15 4 vlDlfgGaGGnviqfanv..fekviaidinlsrlklaqhNaevYgvsdkvtlvlg 56
D+ +GaG +i +a+ +v+++din+ l la Na + gv + +tl
tr|Q9I1T6|Q9I1T6_PSEAE 140 AADIGCGAGPGAIRIAMAcpDAEVHGLDINPAALDLARVNAALAGVGN-LTLARS 193
66999****99998888844569******************9998854.455555 PP
>> tr|Q9HT28|Q9HT28_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.3 0.0 0.00011 0.066 3 70 .. 162 230 .. 160 239 .. 0.89
Alignments for each domain:
== domain 1 score: 11.3 bits; conditional E-value: 0.00011
Methyltransf_15 3 vvlDlfgGaGGnviqfanvf.ekviaidinlsrlklaqhNaevYgvsdkvtlvlgdvfellaklkleei 70
+lD+ +G GG + a++f +v +i ++++l+l + ++ g +d+vtl+l d+ +l + +++++
tr|Q9HT28|Q9HT28_PSEAE 162 KLLDVGCGWGGLARLAAREFgVEVTGITLSKEQLALGRERVKAEGLEDRVTLKLLDYRDLPRDGRFDKV 230
68***********9999996368*********************************9998888887776 PP
>> sp|Q9HV78|TRMA_PSEAE tRNA/tmRNA (uracil-C(5))-methyltransferase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 9.6 0.0 0.00034 0.21 4 84 .. 211 302 .. 209 308 .. 0.87
2 ? -1.0 0.0 0.63 3.9e+02 14 38 .. 305 329 .. 293 339 .. 0.80
Alignments for each domain:
== domain 1 score: 9.6 bits; conditional E-value: 0.00034
Methyltransf_15 4 vlDlfgGaGGnviqfanvfekviaidinlsrlklaqhNaevYgvsdkvtlvlgdvfe............llaklkleeikvdlvflSpP 80
+l l++G G + +a +kv a +i++s ++ a N d+v lv +e la + l++ + vf+ pP
sp|Q9HV78|TRMA_PSEAE 211 LLELYCGNGNFTLPLATRVRKVLATEISKSSVNAALANLADN-AVDNVSLVRLSAEEltqalnevrpfrRLADIDLKSYAFGSVFVDPP 298
6899**********************************9876.5678888888888878888888888888888888888899999999 PP
Methyltransf_15 81 wGGp 84
G+
sp|Q9HV78|TRMA_PSEAE 299 RAGM 302
8886 PP
== domain 2 score: -1.0 bits; conditional E-value: 0.63
Methyltransf_15 14 nviqfanvfekviaidinlsrlkla 38
++ ++a+ fe++ i n+++l++
sp|Q9HV78|TRMA_PSEAE 305 DTCELARRFERILYISCNPETLAQN 329
6778999999999999999998864 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (165 nodes)
Target sequences: 5563 (1857172 residues searched)
Passed MSV filter: 96 (0.0172569); expected 111.3 (0.02)
Passed bias filter: 96 (0.0172569); expected 111.3 (0.02)
Passed Vit filter: 23 (0.00413446); expected 5.6 (0.001)
Passed Fwd filter: 9 (0.00161783); expected 0.1 (1e-05)
Initial search space (Z): 5563 [actual number of targets]
Domain search space (domZ): 9 [number of targets reported over threshold]
# CPU time: 0.04u 0.00s 00:00:00.04 Elapsed: 00:00:00.02
# Mc/sec: 15321.67
//
[ok]