# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/Methyltransf_15.hmm.txt # target sequence database: proteomes/Pseudomonas_aeruginosa.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Methyltransf_15 [M=165] Accession: PF09445.9 Description: RNA cap guanine-N2 methyltransferase Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.8e-11 40.7 0.0 8e-11 40.3 0.0 1.2 1 tr|Q9I6D9|Q9I6D9_PSEAE Uncharacterized protein OS=Pseudomona 2.2e-05 22.6 0.0 0.00066 17.8 0.0 2.3 2 sp|Q9HZG0|RLMKL_PSEAE Ribosomal RNA large subunit methyltra 5.8e-05 21.2 0.0 8e-05 20.7 0.0 1.2 1 tr|Q9HY94|Q9HY94_PSEAE Uncharacterized protein OS=Pseudomona 0.0014 16.7 0.0 0.0021 16.1 0.0 1.2 1 sp|Q9I347|PRMB_PSEAE 50S ribosomal protein L3 glutamine me 0.0048 15.0 0.0 0.0057 14.7 0.0 1.1 1 tr|Q9I281|Q9I281_PSEAE Uncharacterized protein OS=Pseudomona 0.0051 14.9 0.0 0.0071 14.4 0.0 1.2 1 tr|Q9HTB1|Q9HTB1_PSEAE Uncharacterized protein OS=Pseudomona ------ inclusion threshold ------ 0.032 12.3 0.0 0.048 11.7 0.0 1.2 1 tr|Q9I1T6|Q9I1T6_PSEAE Uncharacterized protein OS=Pseudomona 0.045 11.8 0.0 0.066 11.3 0.0 1.2 1 tr|Q9HT28|Q9HT28_PSEAE Uncharacterized protein OS=Pseudomona 0.073 11.1 0.0 0.21 9.6 0.0 1.6 2 sp|Q9HV78|TRMA_PSEAE tRNA/tmRNA (uracil-C(5))-methyltransf Domain annotation for each sequence (and alignments): >> tr|Q9I6D9|Q9I6D9_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 40.3 0.0 1.3e-13 8e-11 3 123 .. 223 345 .. 221 381 .. 0.85 Alignments for each domain: == domain 1 score: 40.3 bits; conditional E-value: 1.3e-13 Methyltransf_15 3 vvlDlfgGaGGnviqfanv.fekviaidinlsrlklaqhNaevYgvsdkvtlvlgdvfellaklkleeikvdlvflSpPwGGpsYkk 88 vlDlf+ GG iq a ++v+++d + l +++Na + gv++kv +v gdvfe+l++lk + ++d+v++ pP k+ tr|Q9I6D9|Q9I6D9_PSEAE 223 RVLDLFSYIGGWGIQAAAFgASEVMCVDASAFALDGVERNAALNGVAEKVACVEGDVFEALRELKAADERFDVVIADPPAFIKRKKD 309 79*************99985578********************************************************87666666 PP Methyltransf_15 89 kekfdlek.kleplklekllkesvklskniilfLPr 123 ++ + + +l++ ++ l k + +s ++LP tr|Q9I6D9|Q9I6D9_PSEAE 310 LKNGEAAYrRLNEQAMRLLSKDGILVSASCSMHLPE 345 666666665667777776777777777777777775 PP >> sp|Q9HZG0|RLMKL_PSEAE Ribosomal RNA large subunit methyltransferase K/L OS=Pseudomonas aeruginosa (strain ATCC 15692 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.3 0.0 0.062 38 25 82 .. 265 320 .. 258 324 .. 0.90 2 ! 17.8 0.0 1.1e-06 0.00066 4 96 .. 568 658 .. 565 700 .. 0.86 Alignments for each domain: == domain 1 score: 2.3 bits; conditional E-value: 0.062 Methyltransf_15 25 viaidinlsrlklaqhNaevYgvsdkvtlvlgdvfellaklkleeikvdlvflSpPwG 82 + + + +++ ++ a +N e gv+d v++ +g++ + + ++++ lv++ pP G sp|Q9HZG0|RLMKL_PSEAE 265 IRGYEADPRLIQPACNNIERAGVADWVKIYQGELATFEPRPDKGQT--GLVICNPPYG 320 6788999999999*********************999888888888..9*******98 PP == domain 2 score: 17.8 bits; conditional E-value: 1.1e-06 Methyltransf_15 4 vlDlfgGaGGnviqfanv.fekviaidinlsrlklaqhNaevYgvsdkvtlvlgdvfellaklkleeikvdlvflSpPwGGpsYkkke 90 +l lf+ + +++ a+ +++ ++d +++ l a +N + g sdk lv+gdv+e l++ + +++l+f+ pP+ s + + sp|Q9HZG0|RLMKL_PSEAE 568 FLNLFCYTATATVHAARGgARSTTSVDLSKTYLDWARRNLSLNGFSDKQRLVHGDVMEWLRE---DDGQYELIFIDPPTFSNSKRMEG 652 67788888888888888745689**********************************99987...455569********999999999 PP Methyltransf_15 91 kfdlek 96 +fd+++ sp|Q9HZG0|RLMKL_PSEAE 653 VFDVQR 658 999966 PP >> tr|Q9HY94|Q9HY94_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.7 0.0 1.3e-07 8e-05 4 61 .. 180 239 .. 177 290 .. 0.87 Alignments for each domain: == domain 1 score: 20.7 bits; conditional E-value: 1.3e-07 Methyltransf_15 4 vlDlfgGaGGnviqfanvfe..kviaidinlsrlklaqhNaevYgvsdkvtlvlgdvfel 61 vlD +G+G +i +a+ f+ +v+++d ++ a Nae+ gv d+v + + d l tr|Q9HY94|Q9HY94_PSEAE 180 VLDFGCGSGLAAIMMAKAFPeaQVYGCDFHAPSIERARANAEAAGVGDRVRFEVSDSDAL 239 89****************96337*****************************99997653 PP >> sp|Q9I347|PRMB_PSEAE 50S ribosomal protein L3 glutamine methyltransferase OS=Pseudomonas aeruginosa (strain ATCC 156 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.1 0.0 3.4e-06 0.0021 3 76 .. 128 198 .. 127 210 .. 0.82 Alignments for each domain: == domain 1 score: 16.1 bits; conditional E-value: 3.4e-06 Methyltransf_15 3 vvlDlfgGaGGnviqfanvfe..kviaidinlsrlklaqhNaevYgvsdkvtlvlgdvfellaklkleeikvdlvf 76 +lDl++G+G i+ a fe +v+ d +++ l++a+ N e + ++v +v+gd f l ++ dl++ sp|Q9I347|PRMB_PSEAE 128 RILDLCTGSGCIGIACAYAFEqaEVVLADLSFDALEVANVNIERHDLGERVYTVQGDGFAGLPGQRF-----DLIV 198 58********877777777652268999*****************************9988777554.....4444 PP >> tr|Q9I281|Q9I281_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.7 0.0 9.2e-06 0.0057 4 60 .. 44 102 .. 41 146 .. 0.87 Alignments for each domain: == domain 1 score: 14.7 bits; conditional E-value: 9.2e-06 Methyltransf_15 4 vlDlfgGaGGnviqfanv...fekviaidinlsrlklaqhNaevYgvsdkvtlvlgdvfe 60 +l + +GaGG+ ++a + + +a d + + l+la + + g ++++l +gdv tr|Q9I281|Q9I281_PSEAE 44 LLSVGCGAGGELAELAGLrpgW-RFVAADLSADMLALARQRCARLGLLERIELHCGDVAG 102 67889***********988856.999*******************************975 PP >> tr|Q9HTB1|Q9HTB1_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.4 0.0 1.1e-05 0.0071 3 39 .. 62 98 .. 60 117 .. 0.93 Alignments for each domain: == domain 1 score: 14.4 bits; conditional E-value: 1.1e-05 Methyltransf_15 3 vvlDlfgGaGGnviqfanvfekviaidinlsrlklaq 39 +vlD+ +G GGnv a+ ++i di+ ++++ + tr|Q9HTB1|Q9HTB1_PSEAE 62 TVLDVGCGDGGNVHFCAMRGARIIIADIDAEKIARTR 98 69*******************************9875 PP >> tr|Q9I1T6|Q9I1T6_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.7 0.0 7.7e-05 0.048 4 56 .. 140 193 .. 137 212 .. 0.78 Alignments for each domain: == domain 1 score: 11.7 bits; conditional E-value: 7.7e-05 Methyltransf_15 4 vlDlfgGaGGnviqfanv..fekviaidinlsrlklaqhNaevYgvsdkvtlvlg 56 D+ +GaG +i +a+ +v+++din+ l la Na + gv + +tl tr|Q9I1T6|Q9I1T6_PSEAE 140 AADIGCGAGPGAIRIAMAcpDAEVHGLDINPAALDLARVNAALAGVGN-LTLARS 193 66999****99998888844569******************9998854.455555 PP >> tr|Q9HT28|Q9HT28_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.3 0.0 0.00011 0.066 3 70 .. 162 230 .. 160 239 .. 0.89 Alignments for each domain: == domain 1 score: 11.3 bits; conditional E-value: 0.00011 Methyltransf_15 3 vvlDlfgGaGGnviqfanvf.ekviaidinlsrlklaqhNaevYgvsdkvtlvlgdvfellaklkleei 70 +lD+ +G GG + a++f +v +i ++++l+l + ++ g +d+vtl+l d+ +l + +++++ tr|Q9HT28|Q9HT28_PSEAE 162 KLLDVGCGWGGLARLAAREFgVEVTGITLSKEQLALGRERVKAEGLEDRVTLKLLDYRDLPRDGRFDKV 230 68***********9999996368*********************************9998888887776 PP >> sp|Q9HV78|TRMA_PSEAE tRNA/tmRNA (uracil-C(5))-methyltransferase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.6 0.0 0.00034 0.21 4 84 .. 211 302 .. 209 308 .. 0.87 2 ? -1.0 0.0 0.63 3.9e+02 14 38 .. 305 329 .. 293 339 .. 0.80 Alignments for each domain: == domain 1 score: 9.6 bits; conditional E-value: 0.00034 Methyltransf_15 4 vlDlfgGaGGnviqfanvfekviaidinlsrlklaqhNaevYgvsdkvtlvlgdvfe............llaklkleeikvdlvflSpP 80 +l l++G G + +a +kv a +i++s ++ a N d+v lv +e la + l++ + vf+ pP sp|Q9HV78|TRMA_PSEAE 211 LLELYCGNGNFTLPLATRVRKVLATEISKSSVNAALANLADN-AVDNVSLVRLSAEEltqalnevrpfrRLADIDLKSYAFGSVFVDPP 298 6899**********************************9876.5678888888888878888888888888888888888899999999 PP Methyltransf_15 81 wGGp 84 G+ sp|Q9HV78|TRMA_PSEAE 299 RAGM 302 8886 PP == domain 2 score: -1.0 bits; conditional E-value: 0.63 Methyltransf_15 14 nviqfanvfekviaidinlsrlkla 38 ++ ++a+ fe++ i n+++l++ sp|Q9HV78|TRMA_PSEAE 305 DTCELARRFERILYISCNPETLAQN 329 6778999999999999999998864 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (165 nodes) Target sequences: 5563 (1857172 residues searched) Passed MSV filter: 96 (0.0172569); expected 111.3 (0.02) Passed bias filter: 96 (0.0172569); expected 111.3 (0.02) Passed Vit filter: 23 (0.00413446); expected 5.6 (0.001) Passed Fwd filter: 9 (0.00161783); expected 0.1 (1e-05) Initial search space (Z): 5563 [actual number of targets] Domain search space (domZ): 9 [number of targets reported over threshold] # CPU time: 0.04u 0.00s 00:00:00.04 Elapsed: 00:00:00.02 # Mc/sec: 15321.67 // [ok]