# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/Methyltransf_15.hmm.txt # target sequence database: proteomes/Strongylocentrotus_purpuratus.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Methyltransf_15 [M=165] Accession: PF09445.9 Description: RNA cap guanine-N2 methyltransferase Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.7e-39 135.8 0.0 3.1e-39 135.0 0.0 1.4 1 tr|W4Y0S2|W4Y0S2_STRPU Uncharacterized protein OS=Strongyloc 2e-08 34.8 0.3 6.7e-08 33.1 0.1 1.9 2 tr|W4YBQ4|W4YBQ4_STRPU Uncharacterized protein OS=Strongyloc 2.4e-05 24.8 0.1 4.3e-05 23.9 0.1 1.5 1 tr|W4YQG0|W4YQG0_STRPU Uncharacterized protein OS=Strongyloc 0.0032 17.9 0.0 0.0048 17.3 0.0 1.3 1 tr|W4Y3I4|W4Y3I4_STRPU Uncharacterized protein OS=Strongyloc ------ inclusion threshold ------ 0.02 15.3 0.1 0.03 14.7 0.1 1.2 1 tr|W4Z4G0|W4Z4G0_STRPU Ubiquinone biosynthesis O-methyltrans 0.032 14.6 0.1 0.052 13.9 0.1 1.3 1 tr|W4XJA0|W4XJA0_STRPU Uncharacterized protein OS=Strongyloc 0.072 13.5 0.0 0.9 9.9 0.0 2.4 2 tr|W4YER5|W4YER5_STRPU tRNA (guanine(37)-N1)-methyltransfera 0.073 13.4 0.0 0.13 12.6 0.0 1.3 1 tr|W4YGN5|W4YGN5_STRPU Uncharacterized protein OS=Strongyloc 0.081 13.3 0.0 0.16 12.3 0.0 1.4 1 tr|W4YT52|W4YT52_STRPU Uncharacterized protein OS=Strongyloc 0.17 12.2 0.1 0.47 10.8 0.0 1.7 2 tr|W4XRJ4|W4XRJ4_STRPU Uncharacterized protein OS=Strongyloc Domain annotation for each sequence (and alignments): >> tr|W4Y0S2|W4Y0S2_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 135.0 0.0 1.1e-42 3.1e-39 2 164 .. 1294 1446 .. 1293 1447 .. 0.95 Alignments for each domain: == domain 1 score: 135.0 bits; conditional E-value: 1.1e-42 Methyltransf_15 2 evvlDlfgGaGGnviqfanvfekviaidinlsrlklaqhNaevYgvsdkvtlvlgdvfellaklkleeikvdlvflSpPwGGpsY 86 +++D+f+G+GGn+iqfa + e+v+a+di++ +++la hNa vYgv+d++++++gd+f++ l k d+vflSpPwGGp+Y tr|W4Y0S2|W4Y0S2_STRPU 1294 DLIVDAFCGSGGNAIQFAFTCERVVAVDIDPAKIELARHNATVYGVEDRIEFIVGDFFKVADYL-----KADVVFLSPPWGGPKY 1373 579*******************************************************998875.....45899*********** PP Methyltransf_15 87 kkkekfdlekkleplklekllkesvklskniilfLPrnsdlkqlaaltaevlenaskvkvvklkenglvkallaylge 164 + e+fdl ++ ++ +++++ +s+ni +f Prn++++qla+l +++ ++++ + n +k+++ay+ge tr|W4Y0S2|W4Y0S2_STRPU 1374 LNAEVFDL-FSMMDIDTAAMFEKARCISENIGFFAPRNANVEQLASL----AGPGGRMEIEQNFLNKKIKTITAYYGE 1446 ********.89999******************************998....8999********************986 PP >> tr|W4YBQ4|W4YBQ4_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.6 0.0 1.1 3.1e+03 116 150 .. 146 180 .. 137 200 .. 0.71 2 ! 33.1 0.1 2.3e-11 6.7e-08 2 84 .. 518 601 .. 517 644 .. 0.87 Alignments for each domain: == domain 1 score: -1.6 bits; conditional E-value: 1.1 Methyltransf_15 116 niilfLPrnsdlkqlaaltaevlenaskvkvvklk 150 ++ LP +ql++++ + + +k+k ++ k tr|W4YBQ4|W4YBQ4_STRPU 146 IMLRNLPTRFGFQQLRKMLSGLNLKPKKIKSLNQK 180 4556799999999*****99999999999844433 PP == domain 2 score: 33.1 bits; conditional E-value: 2.3e-11 Methyltransf_15 2 evvlDlfgGaGGnviqfanvfekviaidinlsrlklaqhNaevYgvsdkvtlvlgdvfellaklkleei.kvdlv.flSpPwGGp 84 +++lD+++G+G i +a+ ekvi++++n++ ++ a++Na + gv d+vt+ +g+ ++ll ++ + d+v ++ pP G tr|W4YBQ4|W4YBQ4_STRPU 518 TTLLDICCGTGTIGISLAKRVEKVIGVEMNEQAIEDAKENAAINGV-DNVTFHCGKAEDLLPGITNRLHsCLDVVgIVDPPRAGL 601 689*****************************************98.68**********99887655433488885567777775 PP >> tr|W4YQG0|W4YQG0_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.9 0.1 1.5e-08 4.3e-05 4 110 .. 52 158 .. 49 209 .. 0.80 Alignments for each domain: == domain 1 score: 23.9 bits; conditional E-value: 1.5e-08 Methyltransf_15 4 vlDlfgGaGGnviqfanv.fekviaidinlsrlklaqhNaevYgvsdkvtlvlgdvfellaklkleeikvdlvflSpPwGGpsYkk. 88 + Dl +G+G +i a+ i+ di+++ l+++q+N+e ++ v++v+ d++++ a +++ d v++ pP G + k tr|W4YQG0|W4YQG0_STRPU 52 IADLGCGCGMLSIGAAMLdAGLCIGFDIDQDALEICQRNCEEFE-LPCVDTVQSDLTKMEAGPWSKKF--DTVIMNPPFGTKHNKGi 135 67999********9998865579********************5.678**********9999988888..*********96544321 PP Methyltransf_15 89 .kekfdlekkleplklekllkes 110 + +l ++ +++ l k+s tr|W4YQG0|W4YQG0_STRPU 136 dLQFVQLGLEMATKSVYSLHKTS 158 02222333355566666666654 PP >> tr|W4Y3I4|W4Y3I4_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.3 0.0 1.7e-06 0.0048 3 78 .. 111 184 .. 109 195 .. 0.84 Alignments for each domain: == domain 1 score: 17.3 bits; conditional E-value: 1.7e-06 Methyltransf_15 3 vvlDlfgGaGGnviqfanvfekviaidinlsrlklaqhNaevY.gvsdkvtlvlgdvfellaklkleeikvdlvflS 78 +++D+ +G+G + +a+ +vi++d ++++++aqh + +v++++g ++l+++ e+ +d +++S tr|W4Y3I4|W4Y3I4_STRPU 111 TIVDVGCGGGILAEPLARLGATVIGVDATPENIEVAQHHVSHDpTIRGNVKYICGTAEDLVRTE-DEA--FDALVCS 184 689**********************************99877525799********99998762.222..4555555 PP >> tr|W4Z4G0|W4Z4G0_STRPU Ubiquinone biosynthesis O-methyltransferase, mitochondrial OS=Strongylocentrotus purpuratus O # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.7 0.1 1e-05 0.03 3 64 .. 157 219 .. 155 251 .. 0.83 Alignments for each domain: == domain 1 score: 14.7 bits; conditional E-value: 1e-05 Methyltransf_15 3 vvlDlfgGaGGnviqfanvfekviaidinlsrlklaqhNaevY.gvsdkvtlvlgdvfellak 64 +++D+ +G+G + +a+ +vi++d ++++++aqh + +v++++g ++l+ + tr|W4Z4G0|W4Z4G0_STRPU 157 TIVDVGCGGGILAEPLARLGATVIGVDATPENIEVAQHHVSHDpTIRGNVKYICGTAEDLVCT 219 689**********************************99876525799******999987643 PP >> tr|W4XJA0|W4XJA0_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.9 0.1 1.8e-05 0.052 3 59 .. 237 291 .. 236 330 .. 0.71 Alignments for each domain: == domain 1 score: 13.9 bits; conditional E-value: 1.8e-05 Methyltransf_15 3 vvlDlfgGaGGnviqfanvfe..kviaidinlsrlklaqhNaevYgvsdkvtlvlgdvf 59 +vlD+ +G GG +i +a++++ + i+idi + +++ a+ Y ++ +v+ v +++ tr|W4XJA0|W4XJA0_STRPU 237 TVLDVGCGEGGASILMAKQYPnsRFIGIDICSYAIQQ----AKGYAIDAEVENVDFQIM 291 58*****************862256777776666655....555666666655554444 PP >> tr|W4YER5|W4YER5_STRPU tRNA (guanine(37)-N1)-methyltransferase OS=Strongylocentrotus purpuratus OX=7668 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.9 0.0 0.00031 0.9 3 57 .. 240 294 .. 238 333 .. 0.83 2 ? 0.6 0.0 0.23 6.6e+02 6 54 .. 419 467 .. 418 504 .. 0.80 Alignments for each domain: == domain 1 score: 9.9 bits; conditional E-value: 0.00031 Methyltransf_15 3 vvlDlfgGaGGnviqfanvfekviaidinlsrlklaqhNaevYgvsdkvtlvlgd 57 vv D+f+G G +i a+ ++v+a d n++ + + Na+ s++++ d tr|W4YER5|W4YER5_STRPU 240 VVYDMFAGVGPFAIPAAKKGCEVHANDLNPESFRWLEVNAKQNKLSSRLKASNLD 294 688*************************************999888888766555 PP == domain 2 score: 0.6 bits; conditional E-value: 0.23 Methyltransf_15 6 DlfgGaGGnviqfanvfekviaidinlsrlklaqhNaevYgvsdkvtlv 54 D+ gG G + a+ ++v+a d n++ + + Na+ s++++ tr|W4YER5|W4YER5_STRPU 419 DIGGGVGPFATPAAKKGCEVHANDLNPESFRWLELNAKQNKLSSRLKAS 467 555677777777888999**************99999988888887765 PP >> tr|W4YGN5|W4YGN5_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.6 0.0 4.6e-05 0.13 3 51 .. 44 92 .. 43 96 .. 0.89 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 4.6e-05 Methyltransf_15 3 vvlDlfgGaGGnviqfanvfekviaidinlsrlklaqhNaevYgvsdkv 51 +v+D+ +G+G + +a+ f++ + di++ +++ a++ ++ v+ + tr|W4YGN5|W4YGN5_STRPU 44 LVVDVGCGSGQFTQSLARHFDRALGFDISEAQIEEAKKHNQFSHVEYSI 92 589*******************************999888887777665 PP >> tr|W4YT52|W4YT52_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.3 0.0 5.6e-05 0.16 22 80 .. 269 329 .. 258 331 .. 0.79 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 5.6e-05 Methyltransf_15 22 fekviaidinlsrlklaqhNaevYgvsdkvtlvlgdvfe...llaklkleeikvdlvflSpP 80 +v aid +++ + l+q Na gvs+++ + + +++ l + k + +++d+++ pP tr|W4YT52|W4YT52_STRPU 269 LAHVTAIDASRDAVMLTQDNASRLGVSNRLSVHHTALTDespLRIHSKYG-TRYDVIVSNPP 329 4589***************************9999888755333444444.469***99999 PP >> tr|W4XRJ4|W4XRJ4_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.8 0.0 0.00016 0.47 2 40 .. 43 81 .. 42 102 .. 0.91 2 ? -2.0 0.0 1.4 4.1e+03 41 80 .. 174 214 .. 171 235 .. 0.74 Alignments for each domain: == domain 1 score: 10.8 bits; conditional E-value: 0.00016 Methyltransf_15 2 evvlDlfgGaGGnviqfanvfekviaidinlsrlklaqh 40 + vlD+ +G+GG++ + + +v + d+ + lk+a + tr|W4XRJ4|W4XRJ4_STRPU 43 RRVLDAACGTGGDSLFLLKHGYEVSSSDSAEAMLKQARK 81 789**************99999************99976 PP == domain 2 score: -2.0 bits; conditional E-value: 1.4 Methyltransf_15 41 NaevYgvsdkvtlvlgdvfellaklkleeikvdlvf.lSpP 80 N +vY +d ++ + ++ + k + +i++d+++ S P tr|W4XRJ4|W4XRJ4_STRPU 174 NKHVYFKEDTINKISSEIVKSPGKQDFVNITFDMIVdGSAP 214 66777778888888888888777777778878877634555 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (165 nodes) Target sequences: 28594 (14266044 residues searched) Passed MSV filter: 735 (0.0257047); expected 571.9 (0.02) Passed bias filter: 592 (0.0207036); expected 571.9 (0.02) Passed Vit filter: 58 (0.0020284); expected 28.6 (0.001) Passed Fwd filter: 10 (0.000349724); expected 0.3 (1e-05) Initial search space (Z): 28594 [actual number of targets] Domain search space (domZ): 10 [number of targets reported over threshold] # CPU time: 0.19u 0.01s 00:00:00.20 Elapsed: 00:00:00.08 # Mc/sec: 29423.72 // [ok]